Wall clock time and date at job start Tue Mar 31 2020 18:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99701 * 2 1 4 4 O 1.21506 * 120.00394 * 357.54852 * 3 2 1 5 5 C 1.48225 * 119.99759 * 177.55356 * 3 2 1 6 6 C 1.39610 * 119.65152 * 186.58258 * 5 3 2 7 7 C 1.38580 * 119.26348 * 179.74803 * 6 5 3 8 8 C 1.38535 * 118.56838 * 0.52104 * 7 6 5 9 9 C 1.39690 * 119.23778 * 359.74807 * 8 7 6 10 10 C 1.48059 * 119.65964 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00258 * 14.32422 * 10 9 8 12 12 N 1.34779 * 119.99543 * 194.32869 * 10 9 8 13 13 C 1.36785 * 119.99899 * 174.83732 * 12 10 9 14 14 H 1.07999 * 119.99764 * 228.50161 * 13 12 10 15 15 C 1.39114 * 119.99691 * 48.50294 * 13 12 10 16 16 N 1.31323 * 119.99764 * 33.50035 * 15 13 12 17 17 Si 1.86796 * 119.99843 * 213.49919 * 15 13 12 18 18 H 1.48497 * 109.47340 * 4.99682 * 17 15 13 19 19 H 1.48491 * 109.47307 * 125.00618 * 17 15 13 20 20 H 1.48507 * 109.46841 * 245.00365 * 17 15 13 21 21 C 1.46504 * 120.00300 * 354.83997 * 12 10 9 22 22 C 1.52999 * 109.46878 * 81.21395 * 21 12 10 23 23 C 1.50705 * 109.46641 * 172.56901 * 22 21 12 24 24 O 1.20819 * 120.00493 * 353.66708 * 23 22 21 25 25 O 1.34234 * 119.99361 * 173.66242 * 23 22 21 26 26 C 1.45204 * 116.99614 * 180.02562 * 25 23 22 27 27 N 1.32365 * 119.65026 * 6.86254 * 5 3 2 28 28 H 1.08994 * 109.47565 * 300.00500 * 1 2 3 29 29 H 1.09004 * 109.46448 * 60.00309 * 1 2 3 30 30 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99962 * 179.97438 * 2 1 3 32 32 H 1.07999 * 120.36794 * 0.02848 * 6 5 3 33 33 H 1.07997 * 120.71839 * 180.27038 * 7 6 5 34 34 H 1.07993 * 120.38371 * 179.76952 * 8 7 6 35 35 H 0.97003 * 119.99432 * 184.96168 * 16 15 13 36 36 H 1.08994 * 109.47103 * 201.21268 * 21 12 10 37 37 H 1.09004 * 109.46825 * 321.21568 * 21 12 10 38 38 H 1.09004 * 109.47010 * 292.56298 * 22 21 12 39 39 H 1.08995 * 109.47720 * 52.57196 * 22 21 12 40 40 H 1.08998 * 109.47512 * 180.02562 * 26 25 23 41 41 H 1.09006 * 109.47198 * 300.00460 * 26 25 23 42 42 H 1.09001 * 109.47277 * 59.99724 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5322 2.2190 -0.0450 5 6 3.6201 1.1678 0.0548 6 6 4.3057 2.3761 0.1936 7 6 5.6903 2.3668 0.2492 8 6 6.3490 1.1519 0.1536 9 6 5.6021 -0.0198 0.0102 10 6 6.2965 -1.3235 -0.0923 11 8 7.4719 -1.4111 0.2048 12 7 5.6253 -2.4130 -0.5152 13 6 6.2899 -3.5924 -0.7111 14 1 6.1472 -4.1470 -1.6268 15 6 7.1495 -4.0775 0.2693 16 7 6.8848 -3.8654 1.5380 17 14 8.6801 -5.0304 -0.2190 18 1 8.8138 -5.0282 -1.6980 19 1 9.8755 -4.3913 0.3871 20 1 8.5675 -6.4297 0.2656 21 6 4.1839 -2.3342 -0.7652 22 6 3.9385 -1.7260 -2.1475 23 6 2.4713 -1.8119 -2.4808 24 8 1.7192 -2.4090 -1.7477 25 8 2.0002 -1.2247 -3.5921 26 6 0.5764 -1.3477 -3.8497 27 7 4.2791 0.0233 -0.0339 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9501 -0.8401 0.0004 32 1 3.7627 3.3072 0.2614 33 1 6.2441 3.2872 0.3606 34 1 7.4276 1.1110 0.1897 35 1 7.5195 -4.1401 2.2182 36 1 3.7533 -3.3348 -0.7269 37 1 3.7169 -1.7083 -0.0047 38 1 4.2501 -0.6814 -2.1453 39 1 4.5132 -2.2750 -2.8933 40 1 0.3287 -0.8301 -4.7763 41 1 0.3134 -2.4016 -3.9411 42 1 0.0184 -0.9043 -3.0250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438602442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:42 Heat of formation + Delta-G solvation = -108.190324 kcal Electronic energy + Delta-G solvation = -30598.496840 eV Core-core repulsion = 26351.518527 eV Total energy + Delta-G solvation = -4246.978313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09683 -41.35140 -40.51342 -39.36898 -37.64767 -36.60515 -35.75571 -34.52732 -33.53260 -32.53464 -31.94178 -28.62748 -28.19931 -27.38656 -25.74885 -25.01896 -24.36958 -22.21171 -21.71457 -21.39509 -19.39276 -19.10271 -18.78085 -17.73891 -17.60502 -17.42418 -17.12684 -16.89098 -16.79323 -16.57909 -16.35574 -15.88753 -15.59446 -15.27919 -15.10393 -14.71385 -14.51107 -14.28483 -14.15097 -13.84719 -13.59518 -13.51389 -13.34969 -13.13864 -13.04946 -12.92023 -12.76820 -12.64025 -12.26931 -12.11445 -11.74442 -11.60402 -11.44666 -10.98409 -10.84974 -10.58591 -10.37728 -10.17256 -10.10947 -9.33498 -8.36702 -6.08084 -0.50221 -0.08058 1.17630 1.38152 1.47264 1.51202 1.56716 1.73438 2.05859 2.14355 2.37447 2.72330 2.94474 3.02866 3.21330 3.65765 3.84582 3.92267 3.95639 3.99462 4.09333 4.27310 4.32066 4.35585 4.38333 4.43722 4.53842 4.56647 4.60355 4.71645 4.86295 4.93541 4.99552 5.04811 5.21162 5.29815 5.38365 5.46107 5.54310 6.11342 6.23220 6.54212 6.73236 6.89492 6.98031 7.03698 7.47844 8.10278 8.67827 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.005147 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.808495 B = 5438.852684 C = 6946.963062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.572 3.428 4 O -0.556 6.556 5 C 0.047 3.953 6 C -0.096 4.096 7 C -0.061 4.061 8 C -0.102 4.102 9 C 0.083 3.917 10 C 0.507 3.493 11 O -0.585 6.585 12 N -0.429 5.429 13 C -0.384 4.384 14 H 0.089 0.911 15 C 0.051 3.949 16 N -0.856 5.856 17 Si 0.957 3.043 18 H -0.257 1.257 19 H -0.290 1.290 20 H -0.274 1.274 21 C 0.114 3.886 22 C -0.116 4.116 23 C 0.478 3.522 24 O -0.519 6.519 25 O -0.367 6.367 26 C 0.027 3.973 27 N -0.442 5.442 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.151 0.849 35 H 0.266 0.734 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 10.660 -7.064 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.366 5.366 3 C 0.357 3.643 4 O -0.435 6.435 5 C -0.093 4.093 6 C -0.117 4.117 7 C -0.086 4.086 8 C -0.123 4.123 9 C -0.057 4.057 10 C 0.295 3.705 11 O -0.467 6.467 12 N -0.146 5.146 13 C -0.510 4.510 14 H 0.106 0.894 15 C -0.159 4.159 16 N -0.489 5.489 17 Si 0.781 3.219 18 H -0.181 1.181 19 H -0.217 1.217 20 H -0.200 1.200 21 C -0.009 4.009 22 C -0.155 4.155 23 C 0.321 3.679 24 O -0.408 6.408 25 O -0.283 6.283 26 C -0.065 4.065 27 N -0.158 5.158 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.187 0.813 33 H 0.211 0.789 34 H 0.168 0.832 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.351 10.241 -6.653 16.673 hybrid contribution 1.293 -0.535 0.280 1.427 sum -10.059 9.705 -6.373 15.362 Atomic orbital electron populations 1.21751 0.77726 1.03861 1.02462 1.45989 1.09133 1.08804 1.72699 1.17981 0.85889 0.84101 0.76285 1.90729 1.69219 1.31735 1.51769 1.21426 0.94280 0.90743 1.02845 1.22463 0.95241 0.98864 0.95118 1.22021 0.93433 0.98770 0.94386 1.22458 1.02706 0.91936 0.95215 1.21440 0.89207 0.95219 0.99865 1.18259 0.86038 0.83204 0.82972 1.90577 1.17698 1.85081 1.53347 1.43245 1.05955 1.07520 1.57930 1.19257 1.28598 1.00892 1.02240 0.89360 1.26026 1.00737 0.95523 0.93635 1.70115 1.33728 1.43918 1.01182 0.85508 0.79432 0.77366 0.79545 1.18088 1.21662 1.19953 1.21855 0.82965 1.00894 0.95213 1.21688 0.89140 1.04485 1.00159 1.23534 0.91504 0.74501 0.78339 1.90595 1.59651 1.40547 1.50010 1.86516 1.29492 1.69977 1.42360 1.23555 0.76016 1.03435 1.03536 1.67892 1.09126 1.27844 1.10935 0.91583 0.91730 0.88745 0.75184 0.81268 0.78928 0.83175 0.92410 0.91907 0.87927 0.88544 0.87650 0.85477 0.91576 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 10.71 127.77 1.37 3.21 16 2 N -0.71 -20.08 5.61 -487.09 -2.73 -22.81 16 3 C 0.57 17.43 7.80 86.90 0.68 18.11 16 4 O -0.56 -18.16 16.34 -3.74 -0.06 -18.22 16 5 C 0.05 1.43 6.75 42.05 0.28 1.71 16 6 C -0.10 -2.31 9.63 22.68 0.22 -2.09 16 7 C -0.06 -1.32 10.16 22.42 0.23 -1.09 16 8 C -0.10 -3.14 9.63 22.69 0.22 -2.92 16 9 C 0.08 3.21 6.12 42.01 0.26 3.47 16 10 C 0.51 25.11 7.15 86.85 0.62 25.73 16 11 O -0.58 -33.01 14.87 -3.88 -0.06 -33.07 16 12 N -0.43 -21.16 2.49 -638.60 -1.59 -22.75 16 13 C -0.38 -20.68 8.95 84.13 0.75 -19.93 16 14 H 0.09 4.55 8.02 -2.91 -0.02 4.53 16 15 C 0.05 2.80 3.89 84.98 0.33 3.13 16 16 N -0.86 -50.33 13.16 21.69 0.29 -50.04 16 17 Si 0.96 44.28 29.67 68.60 2.04 46.31 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.11 4.68 4.43 86.38 0.38 5.06 16 22 C -0.12 -3.90 5.57 29.85 0.17 -3.73 16 23 C 0.48 14.45 7.50 71.24 0.53 14.99 16 24 O -0.52 -16.62 14.22 21.98 0.31 -16.31 16 25 O -0.37 -9.58 10.57 -51.45 -0.54 -10.13 16 26 C 0.03 0.50 10.56 113.37 1.20 1.70 16 27 N -0.44 -15.46 3.94 -174.12 -0.69 -16.14 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.41 12.60 4.95 -92.71 -0.46 12.14 16 32 H 0.17 3.33 7.65 -2.91 -0.02 3.31 16 33 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.15 4.59 7.71 -2.91 -0.02 4.57 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.06 2.72 7.60 -2.39 -0.02 2.70 16 37 H 0.10 4.16 3.85 -2.39 -0.01 4.15 16 38 H 0.10 3.22 6.28 -2.39 -0.01 3.21 16 39 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 42 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 Total: -1.00 -73.05 360.41 4.82 -68.23 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.62 Total: 27.59 kcal Atomic # 6 Polarization: 40.11 SS G_CDS: 7.24 Total: 47.35 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.73 Total: -111.75 kcal Atomic # 8 Polarization: -77.38 SS G_CDS: -0.35 Total: -77.73 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.04 Total: 46.31 kcal Total: -73.05 4.82 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438602442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.956 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds