Wall clock time and date at job start Tue Mar 31 2020 18:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 120.00147 * 2 1 4 4 O 1.21578 * 120.00270 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00097 * 180.02562 * 3 2 1 6 6 C 1.39428 * 120.00020 * 185.32984 * 5 3 2 7 7 C 1.39149 * 119.92276 * 34.14040 * 6 5 3 8 8 C 1.37649 * 120.08437 * 180.23462 * 7 6 5 9 9 C 1.39829 * 119.91317 * 359.49134 * 8 7 6 10 10 C 1.47468 * 120.07858 * 180.27638 * 9 8 7 11 11 O 1.21623 * 119.99774 * 321.97634 * 10 9 8 12 12 N 1.34776 * 119.99985 * 141.97307 * 10 9 8 13 13 C 1.36906 * 119.99862 * 187.86477 * 12 10 9 14 14 H 1.08001 * 119.99427 * 132.49448 * 13 12 10 15 15 C 1.39021 * 119.99900 * 312.49395 * 13 12 10 16 16 N 1.31381 * 120.00083 * 349.79821 * 15 13 12 17 17 Si 1.86797 * 119.99812 * 169.79574 * 15 13 12 18 18 H 1.48504 * 109.47197 * 64.99968 * 17 15 13 19 19 H 1.48503 * 109.47005 * 184.99624 * 17 15 13 20 20 H 1.48501 * 109.47193 * 305.00142 * 17 15 13 21 21 C 1.46497 * 119.99904 * 7.86170 * 12 10 9 22 22 C 1.50694 * 109.46977 * 99.58144 * 21 12 10 23 23 O 1.20832 * 120.00020 * 359.97438 * 22 21 12 24 24 O 1.34234 * 120.00250 * 179.97438 * 22 21 12 25 25 C 1.45196 * 117.00181 * 179.97438 * 24 22 21 26 26 C 1.39821 * 119.83932 * 0.25428 * 9 8 7 27 27 C 1.37635 * 119.92166 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46738 * 300.00320 * 1 2 3 30 30 H 1.09005 * 109.46842 * 59.99684 * 1 2 3 31 31 H 0.96997 * 119.99234 * 180.02562 * 2 1 3 32 32 H 0.97000 * 119.99470 * 5.32024 * 5 3 2 33 33 H 1.07997 * 119.96224 * 359.97438 * 7 6 5 34 34 H 1.07995 * 120.04277 * 179.76829 * 8 7 6 35 35 H 0.96995 * 119.99609 * 185.01440 * 16 15 13 36 36 H 1.09001 * 109.47070 * 219.57860 * 21 12 10 37 37 H 1.09001 * 109.47383 * 339.57573 * 21 12 10 38 38 H 1.09003 * 109.47115 * 60.00110 * 25 24 22 39 39 H 1.09001 * 109.47489 * 180.02562 * 25 24 22 40 40 H 1.09001 * 109.47194 * 300.00479 * 25 24 22 41 41 H 1.08002 * 120.03422 * 180.02562 * 26 9 8 42 42 H 1.08003 * 119.95828 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2201 0.0005 5 7 3.4868 1.1671 -0.0005 6 6 4.1840 2.3693 0.1116 7 6 3.6669 3.4018 0.8882 8 6 4.3500 4.5918 0.9973 9 6 5.5703 4.7586 0.3352 10 6 6.3082 6.0298 0.4546 11 8 5.7029 7.0844 0.4775 12 7 7.6533 6.0228 0.5384 13 6 8.3282 7.1825 0.8102 14 1 9.1000 7.1937 1.5657 15 6 8.0201 8.3456 0.1138 16 7 7.2312 8.2936 -0.9355 17 14 8.7277 9.9825 0.6701 18 1 10.2042 9.9626 0.5126 19 1 8.1564 11.0754 -0.1571 20 1 8.3852 10.2106 2.0969 21 6 8.3932 4.7743 0.3387 22 6 8.9373 4.7321 -1.0659 23 8 8.7281 5.6505 -1.8228 24 8 9.6544 3.6742 -1.4765 25 6 10.1465 3.7013 -2.8422 26 6 6.0893 3.7170 -0.4399 27 6 5.3978 2.5320 -0.5490 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9499 -0.8401 -0.0004 32 1 3.9716 0.3307 -0.0788 33 1 2.7263 3.2708 1.4025 34 1 3.9463 5.3939 1.5972 35 1 7.0743 9.0914 -1.4643 36 1 9.2180 4.7230 1.0495 37 1 7.7254 3.9271 0.4954 38 1 10.7964 4.5658 -2.9772 39 1 10.7079 2.7891 -3.0444 40 1 9.3041 3.7690 -3.5306 41 1 7.0318 3.8423 -0.9523 42 1 5.7984 1.7270 -1.1473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456752796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:55 Heat of formation + Delta-G solvation = -64.296142 kcal Electronic energy + Delta-G solvation = -29285.153323 eV Core-core repulsion = 25040.078404 eV Total energy + Delta-G solvation = -4245.074919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70598 -39.97142 -38.86614 -37.46106 -35.69750 -34.86443 -34.63186 -34.06087 -31.94371 -30.61579 -29.52606 -28.40870 -26.81538 -26.26116 -24.69211 -22.84023 -22.38983 -20.99410 -20.65183 -19.48642 -18.82285 -17.72818 -17.07791 -16.91358 -16.40528 -15.95685 -15.77064 -15.35276 -15.27627 -14.88511 -14.59793 -14.37450 -14.01033 -13.94759 -13.40425 -13.32463 -13.19831 -12.90534 -12.59602 -12.51931 -12.42666 -12.19312 -11.79152 -11.60106 -11.45487 -10.97267 -10.83984 -10.69394 -10.58081 -10.33541 -10.21949 -10.17461 -9.99526 -9.62242 -9.42670 -8.72513 -8.56421 -8.19714 -7.71308 -7.13578 -5.94595 -3.84662 1.41860 1.74928 2.45168 2.97274 3.02303 3.23179 3.36593 3.42532 3.43723 3.95682 3.98628 4.33232 4.67752 4.86292 4.90725 5.18322 5.24557 5.25113 5.33920 5.42459 5.49390 5.50413 5.55330 5.68997 5.72491 5.75542 5.81968 5.83356 5.95620 6.08254 6.11803 6.30657 6.41165 6.53701 6.74851 6.81271 6.96694 7.04464 7.30690 7.65912 7.70478 8.30237 8.35359 8.60662 9.05018 9.14175 9.62603 10.24203 11.09401 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003445 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.392170 B = 8126.072553 C = 9610.431459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.749 5.749 3 C 0.699 3.301 4 O -0.567 6.567 5 N -0.682 5.682 6 C 0.156 3.844 7 C -0.122 4.122 8 C -0.059 4.059 9 C -0.108 4.108 10 C 0.515 3.485 11 O -0.501 6.501 12 N -0.429 5.429 13 C -0.358 4.358 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.796 5.796 17 Si 0.911 3.089 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.096 3.904 22 C 0.417 3.583 23 O -0.449 6.449 24 O -0.378 6.378 25 C 0.036 3.964 26 C -0.094 4.094 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.398 0.602 32 H 0.404 0.596 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.128 0.872 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 -21.570 0.910 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.405 5.405 3 C 0.399 3.601 4 O -0.442 6.442 5 N -0.330 5.330 6 C 0.062 3.938 7 C -0.142 4.142 8 C -0.079 4.079 9 C -0.113 4.113 10 C 0.303 3.697 11 O -0.376 6.376 12 N -0.151 5.151 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.426 5.426 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.030 4.030 22 C 0.255 3.745 23 O -0.330 6.330 24 O -0.297 6.297 25 C -0.058 4.058 26 C -0.113 4.113 27 C -0.170 4.170 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.239 0.761 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.979 -19.611 0.532 20.240 hybrid contribution 1.025 -0.101 -0.462 1.129 sum -3.954 -19.712 0.071 20.104 Atomic orbital electron populations 1.21427 0.77802 1.02022 1.02585 1.44915 1.07935 1.06950 1.80708 1.15974 0.81534 0.84541 0.78060 1.90996 1.67430 1.29921 1.55851 1.42410 1.04844 1.08816 1.76903 1.17454 0.92647 0.86270 0.97457 1.20992 1.00790 0.93209 0.99245 1.21056 0.92633 0.96446 0.97738 1.20642 0.96108 0.95700 0.98812 1.17839 0.82309 0.87260 0.82267 1.90670 1.66879 1.31569 1.48500 1.42865 1.03045 1.05916 1.63273 1.18902 1.22797 0.85497 1.21337 0.90159 1.25384 0.95062 0.99382 0.94285 1.69919 1.30386 1.29126 1.13184 0.86305 0.78447 0.82514 0.78911 1.20486 1.21151 1.19826 1.21817 0.98725 0.93204 0.89271 1.25241 0.76666 0.80123 0.92447 1.90818 1.52543 1.35079 1.54562 1.86548 1.65797 1.45707 1.31600 1.23061 0.99129 1.02422 0.81186 1.21413 0.99536 0.92233 0.98152 1.20666 0.95895 0.98860 1.01577 0.90585 0.92146 0.92202 0.76930 0.76077 0.84902 0.84991 0.92772 0.88439 0.86976 0.92453 0.89108 0.92583 0.85432 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 10.70 59.85 0.64 1.35 16 2 N -0.75 -5.79 5.72 -72.07 -0.41 -6.20 16 3 C 0.70 8.65 8.29 -86.92 -0.72 7.93 16 4 O -0.57 -9.74 14.06 5.30 0.07 -9.67 16 5 N -0.68 -7.48 5.32 -14.22 -0.08 -7.55 16 6 C 0.16 2.31 6.26 -83.73 -0.52 1.78 16 7 C -0.12 -2.08 8.62 -39.46 -0.34 -2.42 16 8 C -0.06 -1.15 9.61 -39.20 -0.38 -1.53 16 9 C -0.11 -2.31 5.40 -104.95 -0.57 -2.88 16 10 C 0.52 13.61 6.76 -12.50 -0.08 13.53 16 11 O -0.50 -15.36 14.21 5.26 0.07 -15.29 16 12 N -0.43 -10.90 2.09 -117.31 -0.24 -11.15 16 13 C -0.36 -9.96 8.89 -15.00 -0.13 -10.09 16 14 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 15 C 0.07 2.11 4.66 -17.45 -0.08 2.03 16 16 N -0.80 -24.66 11.18 55.50 0.62 -24.04 16 17 Si 0.91 22.29 29.57 -169.99 -5.03 17.27 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.10 1.92 5.47 -5.20 -0.03 1.89 16 22 C 0.42 8.65 5.96 36.00 0.21 8.87 16 23 O -0.45 -11.45 15.93 -18.75 -0.30 -11.75 16 24 O -0.38 -6.35 10.57 -39.27 -0.41 -6.76 16 25 C 0.04 0.50 10.56 101.05 1.07 1.57 16 26 C -0.09 -1.71 7.35 -39.21 -0.29 -2.00 16 27 C -0.15 -2.19 9.94 -39.46 -0.39 -2.58 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 1.62 8.85 -40.82 -0.36 1.26 16 32 H 0.40 2.73 8.83 -40.82 -0.36 2.37 16 33 H 0.13 2.25 6.45 -52.49 -0.34 1.91 16 34 H 0.13 2.57 8.04 -52.49 -0.42 2.15 16 35 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 36 H 0.10 1.71 8.11 -51.93 -0.42 1.29 16 37 H 0.11 1.93 4.32 -51.93 -0.22 1.71 16 38 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 41 H 0.13 2.39 3.96 -52.49 -0.21 2.18 16 42 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -40.34 360.06 -6.73 -47.07 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.84 Total: 5.20 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -1.61 Total: 17.45 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.11 Total: -48.95 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.56 Total: -43.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -40.34 -6.73 -47.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456752796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.221 kcal (2) G-P(sol) polarization free energy of solvation -40.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds