Wall clock time and date at job start Tue Mar 31 2020 18:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 120.00147 * 2 1 4 4 O 1.21578 * 120.00270 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00097 * 180.02562 * 3 2 1 6 6 C 1.39428 * 120.00020 * 185.32984 * 5 3 2 7 7 C 1.39149 * 119.92276 * 34.14040 * 6 5 3 8 8 C 1.37649 * 120.08437 * 180.23462 * 7 6 5 9 9 C 1.39829 * 119.91317 * 359.49134 * 8 7 6 10 10 C 1.47468 * 120.07858 * 180.27638 * 9 8 7 11 11 O 1.21623 * 119.99774 * 321.97634 * 10 9 8 12 12 N 1.34776 * 119.99985 * 141.97307 * 10 9 8 13 13 C 1.36906 * 119.99862 * 187.86477 * 12 10 9 14 14 H 1.08001 * 119.99427 * 132.49448 * 13 12 10 15 15 C 1.39021 * 119.99900 * 312.49395 * 13 12 10 16 16 N 1.31381 * 120.00083 * 349.79821 * 15 13 12 17 17 Si 1.86797 * 119.99812 * 169.79574 * 15 13 12 18 18 H 1.48504 * 109.47197 * 64.99968 * 17 15 13 19 19 H 1.48503 * 109.47005 * 184.99624 * 17 15 13 20 20 H 1.48501 * 109.47193 * 305.00142 * 17 15 13 21 21 C 1.46497 * 119.99904 * 7.86170 * 12 10 9 22 22 C 1.50694 * 109.46977 * 99.58144 * 21 12 10 23 23 O 1.20832 * 120.00020 * 359.97438 * 22 21 12 24 24 O 1.34234 * 120.00250 * 179.97438 * 22 21 12 25 25 C 1.45196 * 117.00181 * 179.97438 * 24 22 21 26 26 C 1.39821 * 119.83932 * 0.25428 * 9 8 7 27 27 C 1.37635 * 119.92166 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46738 * 300.00320 * 1 2 3 30 30 H 1.09005 * 109.46842 * 59.99684 * 1 2 3 31 31 H 0.96997 * 119.99234 * 180.02562 * 2 1 3 32 32 H 0.97000 * 119.99470 * 5.32024 * 5 3 2 33 33 H 1.07997 * 119.96224 * 359.97438 * 7 6 5 34 34 H 1.07995 * 120.04277 * 179.76829 * 8 7 6 35 35 H 0.96995 * 119.99609 * 185.01440 * 16 15 13 36 36 H 1.09001 * 109.47070 * 219.57860 * 21 12 10 37 37 H 1.09001 * 109.47383 * 339.57573 * 21 12 10 38 38 H 1.09003 * 109.47115 * 60.00110 * 25 24 22 39 39 H 1.09001 * 109.47489 * 180.02562 * 25 24 22 40 40 H 1.09001 * 109.47194 * 300.00479 * 25 24 22 41 41 H 1.08002 * 120.03422 * 180.02562 * 26 9 8 42 42 H 1.08003 * 119.95828 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2201 0.0005 5 7 3.4868 1.1671 -0.0005 6 6 4.1840 2.3693 0.1116 7 6 3.6669 3.4018 0.8882 8 6 4.3500 4.5918 0.9973 9 6 5.5703 4.7586 0.3352 10 6 6.3082 6.0298 0.4546 11 8 5.7029 7.0844 0.4775 12 7 7.6533 6.0228 0.5384 13 6 8.3282 7.1825 0.8102 14 1 9.1000 7.1937 1.5657 15 6 8.0201 8.3456 0.1138 16 7 7.2312 8.2936 -0.9355 17 14 8.7277 9.9825 0.6701 18 1 10.2042 9.9626 0.5126 19 1 8.1564 11.0754 -0.1571 20 1 8.3852 10.2106 2.0969 21 6 8.3932 4.7743 0.3387 22 6 8.9373 4.7321 -1.0659 23 8 8.7281 5.6505 -1.8228 24 8 9.6544 3.6742 -1.4765 25 6 10.1465 3.7013 -2.8422 26 6 6.0893 3.7170 -0.4399 27 6 5.3978 2.5320 -0.5490 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9499 -0.8401 -0.0004 32 1 3.9716 0.3307 -0.0788 33 1 2.7263 3.2708 1.4025 34 1 3.9463 5.3939 1.5972 35 1 7.0743 9.0914 -1.4643 36 1 9.2180 4.7230 1.0495 37 1 7.7254 3.9271 0.4954 38 1 10.7964 4.5658 -2.9772 39 1 10.7079 2.7891 -3.0444 40 1 9.3041 3.7690 -3.5306 41 1 7.0318 3.8423 -0.9523 42 1 5.7984 1.7270 -1.1473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456752796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:55 Heat of formation + Delta-G solvation = -95.651790 kcal Electronic energy + Delta-G solvation = -29286.513006 eV Core-core repulsion = 25040.078404 eV Total energy + Delta-G solvation = -4246.434601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92406 -41.45050 -40.39477 -39.00679 -37.31139 -36.01513 -35.90161 -35.67870 -33.92191 -32.05523 -30.89955 -29.96059 -27.80844 -27.59745 -26.46137 -24.14964 -23.88956 -22.31300 -21.94142 -21.23363 -19.77274 -18.97407 -18.81297 -18.52629 -18.11416 -17.40266 -16.96801 -16.77320 -16.56278 -16.27117 -16.18723 -15.67575 -15.45887 -15.36329 -14.85366 -14.84142 -14.48608 -14.18082 -14.03841 -13.93875 -13.66825 -13.43264 -13.19995 -13.02868 -12.92838 -12.76298 -12.71201 -12.59580 -12.17180 -12.06418 -11.62421 -11.55797 -11.36261 -11.24477 -10.79405 -10.24477 -10.14251 -9.93163 -9.20028 -9.02196 -8.07615 -6.00834 -0.00179 0.37600 1.37672 1.40105 1.45359 1.49643 1.56936 1.72476 1.98043 2.34767 2.50923 2.94614 3.07237 3.23338 3.31374 3.82913 3.95161 4.00460 4.19610 4.28367 4.35664 4.40148 4.42666 4.43683 4.49396 4.53839 4.57557 4.67930 4.76501 4.98184 5.01186 5.15073 5.19963 5.36625 5.43958 5.47924 5.50654 5.56549 5.92047 5.99289 6.20579 6.97049 6.98603 7.05655 7.16607 7.46104 7.58537 8.26428 8.96545 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003445 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.392170 B = 8126.072553 C = 9610.431459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.726 5.726 3 C 0.692 3.308 4 O -0.619 6.619 5 N -0.665 5.665 6 C 0.178 3.822 7 C -0.124 4.124 8 C -0.068 4.068 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.564 6.564 12 N -0.443 5.443 13 C -0.372 4.372 14 H 0.091 0.909 15 C 0.017 3.983 16 N -0.841 5.841 17 Si 0.973 3.027 18 H -0.260 1.260 19 H -0.293 1.293 20 H -0.268 1.268 21 C 0.093 3.907 22 C 0.428 3.572 23 O -0.505 6.505 24 O -0.362 6.362 25 C 0.030 3.970 26 C -0.093 4.093 27 C -0.128 4.128 28 H 0.119 0.881 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.420 0.580 32 H 0.430 0.570 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.046 0.954 39 H 0.141 0.859 40 H 0.052 0.948 41 H 0.124 0.876 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -26.376 0.804 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.392 3.608 4 O -0.499 6.499 5 N -0.314 5.314 6 C 0.082 3.918 7 C -0.145 4.145 8 C -0.088 4.088 9 C -0.144 4.144 10 C 0.294 3.706 11 O -0.444 6.444 12 N -0.164 5.164 13 C -0.500 4.500 14 H 0.109 0.891 15 C -0.192 4.192 16 N -0.473 5.473 17 Si 0.797 3.203 18 H -0.184 1.184 19 H -0.220 1.220 20 H -0.193 1.193 21 C -0.032 4.032 22 C 0.269 3.731 23 O -0.390 6.390 24 O -0.279 6.279 25 C -0.064 4.064 26 C -0.113 4.113 27 C -0.148 4.148 28 H 0.137 0.863 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.257 0.743 32 H 0.270 0.730 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.143 0.857 37 H 0.161 0.839 38 H 0.065 0.935 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.050 -24.580 0.446 24.915 hybrid contribution 0.686 1.065 -0.429 1.338 sum -3.364 -23.515 0.017 23.754 Atomic orbital electron populations 1.21605 0.76919 1.04449 1.01319 1.44785 1.08400 1.06450 1.78632 1.16261 0.81718 0.85025 0.77776 1.90982 1.68495 1.32247 1.58146 1.42188 1.04564 1.08577 1.76083 1.17479 0.92397 0.86783 0.95187 1.20982 1.00520 0.93080 0.99896 1.20936 0.92517 0.97230 0.98132 1.20271 0.97079 0.94771 1.02328 1.18643 0.82830 0.88375 0.80739 1.90607 1.68244 1.34208 1.51314 1.42982 1.03307 1.07062 1.63042 1.19302 1.22503 0.86854 1.21295 0.89095 1.26287 0.95533 1.03082 0.94314 1.70118 1.33107 1.29057 1.15029 0.85344 0.78594 0.78086 0.78230 1.18445 1.21953 1.19343 1.21987 0.99804 0.91640 0.89769 1.25105 0.75995 0.79918 0.92090 1.90824 1.54822 1.37332 1.56025 1.86507 1.64605 1.43371 1.33396 1.23434 0.99217 1.04582 0.79130 1.21359 0.99763 0.92637 0.97511 1.20987 0.94849 0.98470 1.00474 0.86272 0.93386 0.93616 0.74300 0.73008 0.84959 0.86794 0.94014 0.85719 0.83942 0.93483 0.84073 0.92960 0.85838 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.70 127.77 1.37 2.44 16 2 N -0.73 -8.53 5.72 -500.19 -2.86 -11.39 16 3 C 0.69 15.15 8.29 179.05 1.48 16.64 16 4 O -0.62 -20.66 14.06 -3.96 -0.06 -20.71 16 5 N -0.66 -11.82 5.32 -317.15 -1.69 -13.51 16 6 C 0.18 4.72 6.26 38.37 0.24 4.96 16 7 C -0.12 -4.17 8.62 22.35 0.19 -3.97 16 8 C -0.07 -2.76 9.61 22.52 0.22 -2.55 16 9 C -0.14 -6.16 5.40 -20.08 -0.11 -6.26 16 10 C 0.50 28.02 6.76 86.68 0.59 28.60 16 11 O -0.56 -37.11 14.21 -4.10 -0.06 -37.16 16 12 N -0.44 -23.18 2.09 -643.29 -1.34 -24.53 16 13 C -0.37 -21.31 8.89 84.09 0.75 -20.56 16 14 H 0.09 4.83 7.85 -2.91 -0.02 4.80 16 15 C 0.02 1.00 4.66 84.95 0.40 1.39 16 16 N -0.84 -55.23 11.18 21.68 0.24 -54.99 16 17 Si 0.97 47.60 29.57 68.60 2.03 49.63 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 C 0.09 3.64 5.47 85.63 0.47 4.11 16 22 C 0.43 17.45 5.96 71.23 0.42 17.88 16 23 O -0.50 -26.30 15.93 21.95 0.35 -25.95 16 24 O -0.36 -11.19 10.57 -51.45 -0.54 -11.73 16 25 C 0.03 0.74 10.56 113.37 1.20 1.94 16 26 C -0.09 -3.27 7.35 22.51 0.17 -3.10 16 27 C -0.13 -3.23 9.94 22.35 0.22 -3.01 16 28 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.42 1.33 8.85 -92.71 -0.82 0.51 16 32 H 0.43 3.34 8.83 -92.71 -0.82 2.52 16 33 H 0.13 4.48 6.45 -2.91 -0.02 4.46 16 34 H 0.11 4.87 8.04 -2.91 -0.02 4.84 16 35 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 36 H 0.13 4.15 8.11 -2.39 -0.02 4.13 16 37 H 0.14 4.67 4.32 -2.39 -0.01 4.66 16 38 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 39 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 41 H 0.12 4.44 3.96 -2.91 -0.01 4.43 16 42 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -97.32 360.06 3.14 -94.18 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.54 Total: 17.68 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 7.60 Total: 38.49 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -5.65 Total: -104.42 kcal Atomic # 8 Polarization: -95.25 SS G_CDS: -0.31 Total: -95.56 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -97.32 3.14 -94.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456752796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.472 kcal (2) G-P(sol) polarization free energy of solvation -97.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds