Wall clock time and date at job start Tue Mar 31 2020 19:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99760 * 2 1 4 4 C 1.52999 * 109.60664 * 305.07753 * 3 2 1 5 5 N 1.46503 * 109.47424 * 301.64182 * 4 3 2 6 6 C 1.34779 * 120.00213 * 175.32455 * 5 4 3 7 7 O 1.21273 * 119.99855 * 359.72802 * 6 5 4 8 8 C 1.50697 * 119.99560 * 179.72060 * 6 5 4 9 9 H 1.09001 * 109.47734 * 300.00178 * 8 6 5 10 10 C 1.50705 * 109.47077 * 60.00367 * 8 6 5 11 11 H 1.07993 * 119.99771 * 234.77523 * 10 8 6 12 12 C 1.37875 * 119.99985 * 54.77695 * 10 8 6 13 13 N 1.31517 * 119.99884 * 1.30618 * 12 10 8 14 14 Si 1.86798 * 119.99886 * 181.30638 * 12 10 8 15 15 H 1.48493 * 109.47360 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46897 * 120.00071 * 14 12 10 17 17 H 1.48501 * 109.47180 * 239.99549 * 14 12 10 18 18 C 1.50709 * 109.46675 * 179.97438 * 8 6 5 19 19 C 1.38234 * 119.99963 * 238.07170 * 18 8 6 20 20 C 1.38237 * 119.99683 * 179.76776 * 19 18 8 21 21 C 1.38234 * 119.99885 * 0.50931 * 20 19 18 22 22 C 1.38232 * 120.00380 * 359.74437 * 21 20 19 23 23 C 1.38234 * 119.99743 * 58.34877 * 18 8 6 24 24 C 1.53859 * 109.61022 * 184.74114 * 3 2 1 25 25 C 1.55041 * 106.94677 * 287.67039 * 24 3 2 26 26 S 1.83457 * 102.08616 * 317.64022 * 25 24 3 27 27 C 1.54271 * 109.60856 * 65.41682 * 3 2 1 28 28 H 1.09002 * 109.46610 * 295.26072 * 1 2 3 29 29 H 1.08996 * 109.46832 * 55.26346 * 1 2 3 30 30 H 1.08996 * 109.46900 * 175.26263 * 1 2 3 31 31 H 1.09005 * 109.47321 * 181.64391 * 4 3 2 32 32 H 1.09003 * 109.47280 * 61.64032 * 4 3 2 33 33 H 0.97002 * 119.99353 * 355.04328 * 5 4 3 34 34 H 0.97003 * 119.99891 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00025 * 359.97438 * 19 18 8 36 36 H 1.07997 * 119.99909 * 180.22858 * 20 19 18 37 37 H 1.08001 * 119.99885 * 179.72149 * 21 20 19 38 38 H 1.07999 * 120.00253 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00206 * 359.97438 * 23 18 8 40 40 H 1.08999 * 109.97349 * 46.86930 * 24 3 2 41 41 H 1.08995 * 109.97390 * 168.14935 * 24 3 2 42 42 H 1.08994 * 110.81378 * 199.54437 * 25 24 3 43 43 H 1.09005 * 111.18709 * 75.89695 * 25 24 3 44 44 H 1.09010 * 110.39912 * 210.58108 * 27 3 2 45 45 H 1.08991 * 110.40372 * 332.99789 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4623 2.1114 -1.1795 5 7 1.7613 1.4105 -2.4308 6 6 1.2904 1.8881 -3.5999 7 8 0.6151 2.8953 -3.6154 8 6 1.6033 1.1705 -4.8876 9 1 2.6832 1.1379 -5.0323 10 6 1.0623 -0.2346 -4.8239 11 1 1.7177 -1.0741 -5.0027 12 6 -0.2693 -0.4483 -4.5375 13 7 -1.0730 0.5749 -4.3452 14 14 -0.9320 -2.1910 -4.4226 15 1 0.1668 -3.1563 -4.6789 16 1 -1.4870 -2.4210 -3.0645 17 1 -2.0030 -2.3810 -5.4336 18 6 0.9636 1.9029 -6.0389 19 6 0.0651 1.2485 -6.8607 20 6 -0.5253 1.9217 -7.9138 21 6 -0.2093 3.2463 -8.1515 22 6 0.6932 3.8992 -7.3329 23 6 1.2796 3.2275 -6.2766 24 6 3.5398 1.1898 -0.1198 25 6 4.0608 0.6597 1.2408 26 16 3.0651 1.6298 2.4379 27 6 1.6685 2.0243 1.3215 28 1 -0.3632 0.4386 0.9294 29 1 -0.3633 0.5856 -0.8445 30 1 -0.3633 -1.0241 -0.0849 31 1 1.9288 3.0965 -1.1945 32 1 0.3831 2.2219 -1.0740 33 1 2.3016 0.6050 -2.4183 34 1 -2.0099 0.4246 -4.1440 35 1 -0.1781 0.2123 -6.6779 36 1 -1.2301 1.4115 -8.5536 37 1 -0.6672 3.7710 -8.9770 38 1 0.9404 4.9340 -7.5189 39 1 1.9846 3.7376 -5.6370 40 1 3.7992 0.4890 -0.9133 41 1 3.9718 2.1680 -0.3306 42 1 5.1235 0.8720 1.3579 43 1 3.8658 -0.4073 1.3487 44 1 1.6016 3.1007 1.1623 45 1 0.7342 1.6413 1.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462917922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:16 Heat of formation + Delta-G solvation = -50.550227 kcal Electronic energy + Delta-G solvation = -27970.034968 eV Core-core repulsion = 24271.849332 eV Total energy + Delta-G solvation = -3698.185636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70792 -38.66528 -37.25739 -34.49269 -33.70494 -32.99097 -30.88452 -29.88878 -29.65741 -27.69583 -26.87832 -25.95191 -23.91567 -23.31082 -21.27027 -20.64789 -19.99719 -19.18897 -17.06827 -16.99988 -16.65154 -15.90476 -15.45250 -15.23630 -15.05413 -14.80519 -14.53941 -14.27267 -14.02853 -13.83593 -13.68094 -13.17024 -12.78511 -12.68211 -12.40906 -12.37579 -12.22442 -12.15186 -11.93538 -11.86045 -11.51195 -11.38879 -11.28886 -11.01537 -10.76710 -10.61802 -10.42395 -10.21147 -10.08821 -9.74643 -9.47878 -9.35493 -8.70032 -8.37199 -8.06825 -7.76274 -7.74303 -7.41460 -6.18999 -4.34763 1.72699 2.24461 2.50892 2.60191 3.14371 3.25501 3.27933 3.65287 4.06286 4.15791 4.30000 4.49023 4.53568 4.70345 4.99287 5.02586 5.05555 5.08837 5.24594 5.33648 5.44822 5.57891 5.68043 5.76948 5.79988 5.83332 5.84984 5.93830 6.01262 6.03088 6.14868 6.34480 6.54428 6.63044 6.79396 6.87188 7.09285 7.16640 7.21038 7.44834 7.51290 7.61930 7.66751 7.77917 8.14232 8.25828 8.56570 8.76820 9.31205 9.65652 10.80655 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.004044 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.829958 B = 6921.734716 C = 8127.490760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.362 6.362 3 C 0.102 3.898 4 C 0.110 3.890 5 N -0.729 5.729 6 C 0.553 3.447 7 O -0.548 6.548 8 C 0.056 3.944 9 H 0.055 0.945 10 C -0.535 4.535 11 H 0.067 0.933 12 C 0.073 3.927 13 N -0.844 5.844 14 Si 0.884 3.116 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.016 4.016 19 C -0.055 4.055 20 C -0.149 4.149 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.064 4.064 26 S -0.294 6.294 27 C -0.096 4.096 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.264 0.736 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 0.727 6.692 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.281 6.281 3 C 0.060 3.940 4 C -0.017 4.017 5 N -0.384 5.384 6 C 0.342 3.658 7 O -0.424 6.424 8 C 0.035 3.965 9 H 0.073 0.927 10 C -0.573 4.573 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.477 5.477 14 Si 0.711 3.289 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.017 4.017 19 C -0.073 4.073 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.127 4.127 24 C -0.151 4.151 25 C -0.212 4.212 26 S -0.069 6.069 27 C -0.244 4.244 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.191 1.644 7.883 10.157 hybrid contribution -1.102 -1.331 -0.843 1.923 sum 5.089 0.313 7.040 8.692 Atomic orbital electron populations 1.22880 0.80539 1.03403 1.00392 1.87966 1.20316 1.25162 1.94651 1.22541 0.94103 0.84688 0.92621 1.21561 1.01041 0.95090 0.84001 1.45701 1.57184 1.30569 1.04923 1.20990 0.76879 0.82787 0.85095 1.90543 1.37830 1.26716 1.87320 1.17896 0.95771 0.95221 0.87590 0.92662 1.20764 0.94684 0.90063 1.51754 0.91438 1.25027 0.97101 0.96707 0.94536 1.70120 1.05081 1.28994 1.43535 0.86645 0.79257 0.85081 0.77895 1.19460 1.20908 1.20848 1.19796 0.95109 0.92294 0.94466 1.21296 0.93209 1.01086 0.91703 1.21037 1.01338 0.94922 0.99439 1.20779 1.00011 0.95302 1.00084 1.20777 0.99612 0.98632 0.97256 1.20868 1.00482 0.94856 0.96516 1.22520 0.91510 1.03558 0.97480 1.24204 1.01021 1.02068 0.93903 1.87407 1.24834 1.70028 1.24582 1.24618 0.99473 1.04357 0.95989 0.94474 0.91880 0.89576 0.91799 0.91258 0.76682 0.92605 0.84929 0.88067 0.88196 0.88093 0.88095 0.88313 0.88673 0.87966 0.88538 0.87927 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.30 101.05 1.04 1.39 16 2 O -0.36 -5.39 9.99 -35.23 -0.35 -5.74 16 3 C 0.10 1.33 0.47 -89.51 -0.04 1.29 16 4 C 0.11 1.74 3.86 -4.04 -0.02 1.73 16 5 N -0.73 -13.40 5.12 -60.29 -0.31 -13.70 16 6 C 0.55 12.41 5.49 -10.99 -0.06 12.35 16 7 O -0.55 -14.10 14.82 5.56 0.08 -14.02 16 8 C 0.06 1.28 2.71 -94.07 -0.26 1.02 16 9 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 10 C -0.53 -12.56 7.41 -34.44 -0.26 -12.81 16 11 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.77 3.51 -17.82 -0.06 1.71 16 13 N -0.84 -21.87 10.48 55.43 0.58 -21.29 16 14 Si 0.88 19.18 29.54 -169.99 -5.02 14.16 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C -0.02 -0.37 4.51 -104.62 -0.47 -0.84 16 19 C -0.06 -1.28 7.88 -39.58 -0.31 -1.59 16 20 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 21 C -0.14 -2.81 10.05 -39.59 -0.40 -3.21 16 22 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 23 C -0.11 -2.38 8.39 -39.58 -0.33 -2.72 16 24 C -0.11 -1.24 5.09 -25.20 -0.13 -1.37 16 25 C -0.06 -0.67 7.28 38.24 0.28 -0.39 16 26 S -0.29 -3.61 23.25 -107.50 -2.50 -6.11 16 27 C -0.10 -1.15 6.35 37.82 0.24 -0.91 16 28 H 0.04 0.47 6.40 -51.93 -0.33 0.14 16 29 H 0.06 1.10 6.12 -51.93 -0.32 0.78 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.25 6.49 -51.93 -0.34 0.91 16 33 H 0.40 6.90 7.30 -40.82 -0.30 6.60 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.13 3.23 5.35 -52.49 -0.28 2.95 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.10 2.12 7.88 -52.49 -0.41 1.70 16 40 H 0.10 1.08 7.35 -51.93 -0.38 0.70 16 41 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 1.14 7.89 -51.92 -0.41 0.73 16 45 H 0.10 1.22 6.11 -51.93 -0.32 0.90 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -28.64 367.93 -9.98 -38.62 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -6.44 Total: 13.67 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.57 Total: -11.14 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.27 Total: -34.99 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.27 Total: -19.76 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.50 Total: -6.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.64 -9.98 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462917922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.933 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds