Wall clock time and date at job start Tue Mar 31 2020 19:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99760 * 2 1 4 4 C 1.52999 * 109.60664 * 305.07753 * 3 2 1 5 5 N 1.46503 * 109.47424 * 301.64182 * 4 3 2 6 6 C 1.34779 * 120.00213 * 175.32455 * 5 4 3 7 7 O 1.21273 * 119.99855 * 359.72802 * 6 5 4 8 8 C 1.50697 * 119.99560 * 179.72060 * 6 5 4 9 9 H 1.09001 * 109.47734 * 300.00178 * 8 6 5 10 10 C 1.50705 * 109.47077 * 60.00367 * 8 6 5 11 11 H 1.07993 * 119.99771 * 234.77523 * 10 8 6 12 12 C 1.37875 * 119.99985 * 54.77695 * 10 8 6 13 13 N 1.31517 * 119.99884 * 1.30618 * 12 10 8 14 14 Si 1.86798 * 119.99886 * 181.30638 * 12 10 8 15 15 H 1.48493 * 109.47360 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46897 * 120.00071 * 14 12 10 17 17 H 1.48501 * 109.47180 * 239.99549 * 14 12 10 18 18 C 1.50709 * 109.46675 * 179.97438 * 8 6 5 19 19 C 1.38234 * 119.99963 * 238.07170 * 18 8 6 20 20 C 1.38237 * 119.99683 * 179.76776 * 19 18 8 21 21 C 1.38234 * 119.99885 * 0.50931 * 20 19 18 22 22 C 1.38232 * 120.00380 * 359.74437 * 21 20 19 23 23 C 1.38234 * 119.99743 * 58.34877 * 18 8 6 24 24 C 1.53859 * 109.61022 * 184.74114 * 3 2 1 25 25 C 1.55041 * 106.94677 * 287.67039 * 24 3 2 26 26 S 1.83457 * 102.08616 * 317.64022 * 25 24 3 27 27 C 1.54271 * 109.60856 * 65.41682 * 3 2 1 28 28 H 1.09002 * 109.46610 * 295.26072 * 1 2 3 29 29 H 1.08996 * 109.46832 * 55.26346 * 1 2 3 30 30 H 1.08996 * 109.46900 * 175.26263 * 1 2 3 31 31 H 1.09005 * 109.47321 * 181.64391 * 4 3 2 32 32 H 1.09003 * 109.47280 * 61.64032 * 4 3 2 33 33 H 0.97002 * 119.99353 * 355.04328 * 5 4 3 34 34 H 0.97003 * 119.99891 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00025 * 359.97438 * 19 18 8 36 36 H 1.07997 * 119.99909 * 180.22858 * 20 19 18 37 37 H 1.08001 * 119.99885 * 179.72149 * 21 20 19 38 38 H 1.07999 * 120.00253 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00206 * 359.97438 * 23 18 8 40 40 H 1.08999 * 109.97349 * 46.86930 * 24 3 2 41 41 H 1.08995 * 109.97390 * 168.14935 * 24 3 2 42 42 H 1.08994 * 110.81378 * 199.54437 * 25 24 3 43 43 H 1.09005 * 111.18709 * 75.89695 * 25 24 3 44 44 H 1.09010 * 110.39912 * 210.58108 * 27 3 2 45 45 H 1.08991 * 110.40372 * 332.99789 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4623 2.1114 -1.1795 5 7 1.7613 1.4105 -2.4308 6 6 1.2904 1.8881 -3.5999 7 8 0.6151 2.8953 -3.6154 8 6 1.6033 1.1705 -4.8876 9 1 2.6832 1.1379 -5.0323 10 6 1.0623 -0.2346 -4.8239 11 1 1.7177 -1.0741 -5.0027 12 6 -0.2693 -0.4483 -4.5375 13 7 -1.0730 0.5749 -4.3452 14 14 -0.9320 -2.1910 -4.4226 15 1 0.1668 -3.1563 -4.6789 16 1 -1.4870 -2.4210 -3.0645 17 1 -2.0030 -2.3810 -5.4336 18 6 0.9636 1.9029 -6.0389 19 6 0.0651 1.2485 -6.8607 20 6 -0.5253 1.9217 -7.9138 21 6 -0.2093 3.2463 -8.1515 22 6 0.6932 3.8992 -7.3329 23 6 1.2796 3.2275 -6.2766 24 6 3.5398 1.1898 -0.1198 25 6 4.0608 0.6597 1.2408 26 16 3.0651 1.6298 2.4379 27 6 1.6685 2.0243 1.3215 28 1 -0.3632 0.4386 0.9294 29 1 -0.3633 0.5856 -0.8445 30 1 -0.3633 -1.0241 -0.0849 31 1 1.9288 3.0965 -1.1945 32 1 0.3831 2.2219 -1.0740 33 1 2.3016 0.6050 -2.4183 34 1 -2.0099 0.4246 -4.1440 35 1 -0.1781 0.2123 -6.6779 36 1 -1.2301 1.4115 -8.5536 37 1 -0.6672 3.7710 -8.9770 38 1 0.9404 4.9340 -7.5189 39 1 1.9846 3.7376 -5.6370 40 1 3.7992 0.4890 -0.9133 41 1 3.9718 2.1680 -0.3306 42 1 5.1235 0.8720 1.3579 43 1 3.8658 -0.4073 1.3487 44 1 1.6016 3.1007 1.1623 45 1 0.7342 1.6413 1.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462917922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:15 Heat of formation + Delta-G solvation = -66.478164 kcal Electronic energy + Delta-G solvation = -27970.725655 eV Core-core repulsion = 24271.849332 eV Total energy + Delta-G solvation = -3698.876324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06541 -40.18795 -38.88530 -35.68773 -35.50680 -34.39361 -32.64547 -31.30861 -30.94804 -29.27862 -28.04676 -27.37154 -25.60254 -24.37336 -22.92093 -22.24421 -21.15380 -20.87203 -18.73576 -18.09277 -17.97346 -17.30988 -17.04529 -16.71827 -16.48347 -16.23469 -15.97912 -15.59316 -15.34811 -15.24137 -15.15929 -14.59793 -14.27582 -14.04134 -13.96314 -13.79278 -13.69416 -13.38570 -13.23143 -13.02813 -12.95520 -12.80065 -12.67436 -12.49091 -12.34848 -12.21648 -11.78062 -11.74386 -11.43175 -11.20003 -11.13238 -10.65584 -10.54748 -10.16053 -9.66219 -9.39423 -9.08209 -8.71349 -8.06433 -6.25182 0.79233 0.86747 0.95530 1.32774 1.38754 1.46259 1.53191 2.31129 2.42822 2.58745 2.80685 3.20948 3.33898 3.43872 3.50949 3.60232 4.01023 4.13460 4.23797 4.31257 4.32894 4.36432 4.39617 4.47440 4.51117 4.56793 4.65586 4.67908 4.75867 4.80944 4.84934 4.93383 5.00399 5.01319 5.11619 5.18677 5.45231 5.57443 5.71375 5.87047 5.89226 5.97100 6.00479 6.05899 6.44325 6.54303 6.77805 7.09098 7.42999 7.94907 8.91898 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.004044 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.829958 B = 6921.734716 C = 8127.490760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.108 3.892 4 C 0.114 3.886 5 N -0.717 5.717 6 C 0.554 3.446 7 O -0.586 6.586 8 C 0.047 3.953 9 H 0.067 0.933 10 C -0.531 4.531 11 H 0.068 0.932 12 C 0.046 3.954 13 N -0.870 5.870 14 Si 0.932 3.068 15 H -0.263 1.263 16 H -0.286 1.286 17 H -0.289 1.289 18 C -0.037 4.037 19 C -0.080 4.080 20 C -0.156 4.156 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.053 4.053 26 S -0.314 6.314 27 C -0.091 4.091 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.405 0.595 34 H 0.255 0.745 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 0.869 6.748 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.067 3.933 4 C -0.012 4.012 5 N -0.370 5.370 6 C 0.343 3.657 7 O -0.465 6.465 8 C 0.026 3.974 9 H 0.085 0.915 10 C -0.569 4.569 11 H 0.087 0.913 12 C -0.159 4.159 13 N -0.505 5.505 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.215 1.215 18 C -0.038 4.038 19 C -0.098 4.098 20 C -0.175 4.175 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.201 4.201 26 S -0.088 6.088 27 C -0.240 4.240 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.240 0.760 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.248 1.751 7.959 10.907 hybrid contribution -1.378 -1.351 -0.892 2.125 sum 5.871 0.401 7.068 9.197 Atomic orbital electron populations 1.22799 0.80713 1.03084 1.00135 1.87952 1.20189 1.26194 1.94653 1.22590 0.95229 0.83664 0.91842 1.21617 0.99853 0.95822 0.83943 1.45538 1.56122 1.30431 1.04927 1.20925 0.76454 0.82282 0.85995 1.90509 1.39690 1.28390 1.87942 1.18006 0.96472 0.94895 0.88023 0.91467 1.20912 0.94640 0.90595 1.50721 0.91336 1.25444 0.97269 0.98810 0.94330 1.70262 1.04685 1.30425 1.45131 0.85897 0.78606 0.82334 0.77288 1.18701 1.21166 1.21511 1.19929 0.95859 0.93214 0.94816 1.21251 0.94608 1.00613 0.93322 1.21329 1.01303 0.95835 0.98989 1.21178 0.99302 0.94747 1.00673 1.21179 0.98824 1.00052 0.96243 1.21008 1.01178 0.94588 0.97500 1.22559 0.89751 1.04468 0.98165 1.24252 1.01960 1.01543 0.92312 1.87514 1.25217 1.70555 1.25520 1.24551 0.99531 1.04743 0.95159 0.92330 0.95035 0.89440 0.91058 0.93642 0.75994 0.93544 0.86890 0.86079 0.84519 0.84967 0.87996 0.88010 0.87481 0.85547 0.88634 0.87084 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.30 113.37 1.17 2.02 16 2 O -0.37 -10.73 9.99 -148.98 -1.49 -12.21 16 3 C 0.11 2.71 0.47 -10.07 0.00 2.71 16 4 C 0.11 3.61 3.86 86.38 0.33 3.95 16 5 N -0.72 -26.44 5.12 -463.05 -2.37 -28.81 16 6 C 0.55 25.23 5.49 87.66 0.48 25.71 16 7 O -0.59 -30.82 14.82 -3.01 -0.04 -30.87 16 8 C 0.05 2.17 2.71 -13.03 -0.04 2.13 16 9 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 10 C -0.53 -25.14 7.41 25.60 0.19 -24.95 16 11 H 0.07 3.17 7.81 -2.91 -0.02 3.14 16 12 C 0.05 2.23 3.51 84.65 0.30 2.53 16 13 N -0.87 -46.24 10.48 21.45 0.22 -46.02 16 14 Si 0.93 39.76 29.54 68.60 2.03 41.78 16 15 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 16 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.04 -1.75 4.51 -19.86 -0.09 -1.84 16 19 C -0.08 -3.75 7.88 22.27 0.18 -3.58 16 20 C -0.16 -6.39 10.05 22.27 0.22 -6.17 16 21 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 22 C -0.15 -5.52 10.05 22.27 0.22 -5.30 16 23 C -0.12 -5.41 8.39 22.27 0.19 -5.22 16 24 C -0.11 -2.24 5.09 31.58 0.16 -2.08 16 25 C -0.05 -0.97 7.28 72.68 0.53 -0.44 16 26 S -0.31 -7.10 23.25 -56.49 -1.31 -8.42 16 27 C -0.09 -2.08 6.35 72.41 0.46 -1.62 16 28 H 0.06 1.45 6.40 -2.39 -0.02 1.43 16 29 H 0.03 1.13 6.12 -2.39 -0.01 1.11 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.05 1.69 6.49 -2.39 -0.02 1.67 16 33 H 0.40 13.86 7.30 -92.71 -0.68 13.19 16 34 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 35 H 0.11 5.65 5.35 -2.91 -0.02 5.64 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.10 4.29 7.88 -2.91 -0.02 4.27 16 40 H 0.10 2.03 7.35 -2.39 -0.02 2.01 16 41 H 0.11 1.94 8.11 -2.39 -0.02 1.92 16 42 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.11 2.34 7.89 -2.38 -0.02 2.32 16 45 H 0.10 2.32 6.11 -2.39 -0.01 2.31 16 Total: -1.00 -61.96 367.93 1.89 -60.07 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.33 Total: 41.60 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.52 Total: -17.12 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.15 Total: -74.83 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.53 Total: -43.08 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: -7.10 SS G_CDS: -1.31 Total: -8.42 kcal Total: -61.96 1.89 -60.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462917922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.407 kcal (2) G-P(sol) polarization free energy of solvation -61.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds