Wall clock time and date at job start Tue Mar 31 2020 19:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00010 * 2 1 4 4 C 1.52995 * 109.46830 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47728 * 65.02564 * 4 3 2 6 6 C 1.46505 * 119.99924 * 274.07478 * 5 4 3 7 7 C 1.50693 * 109.47048 * 279.96216 * 6 5 4 8 8 H 1.08004 * 120.00174 * 3.41942 * 7 6 5 9 9 C 1.37878 * 120.00255 * 183.41705 * 7 6 5 10 10 N 1.31524 * 119.99507 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00490 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46838 * 59.99907 * 11 9 7 13 13 H 1.48492 * 109.47517 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47316 * 300.00477 * 11 9 7 15 15 S 1.65596 * 120.00246 * 94.06774 * 5 4 3 16 16 O 1.42101 * 106.40342 * 330.13908 * 15 5 4 17 17 O 1.42096 * 106.40243 * 197.21593 * 15 5 4 18 18 N 1.65602 * 107.21564 * 83.67370 * 15 5 4 19 19 C 1.46504 * 119.99960 * 64.78944 * 18 15 5 20 20 C 1.52992 * 109.47318 * 164.63013 * 19 18 15 21 21 H 1.09004 * 110.85403 * 54.30086 * 20 19 18 22 22 C 1.54479 * 110.97555 * 290.51287 * 20 19 18 23 23 N 1.46819 * 105.44561 * 216.49474 * 22 20 19 24 24 C 1.34419 * 111.31704 * 16.95720 * 23 22 20 25 25 O 1.21278 * 124.93842 * 179.66186 * 24 23 22 26 26 C 1.51270 * 110.11698 * 359.62884 * 24 23 22 27 27 H 1.09001 * 109.46799 * 60.00444 * 1 2 3 28 28 H 1.09002 * 109.46743 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47303 * 300.00190 * 1 2 3 30 30 H 1.08995 * 109.46878 * 59.99916 * 3 2 1 31 31 H 1.08993 * 109.46854 * 299.99702 * 3 2 1 32 32 H 1.09005 * 109.47409 * 305.01683 * 4 3 2 33 33 H 1.09008 * 109.46909 * 185.02340 * 4 3 2 34 34 H 1.09007 * 109.46996 * 39.96218 * 6 5 4 35 35 H 1.09001 * 109.46920 * 159.95642 * 6 5 4 36 36 H 0.96998 * 119.99359 * 179.97438 * 10 9 7 37 37 H 0.97004 * 120.00245 * 245.06420 * 18 15 5 38 38 H 1.08999 * 109.47016 * 284.63575 * 19 18 15 39 39 H 1.09009 * 109.46810 * 44.63312 * 19 18 15 40 40 H 1.09007 * 110.24095 * 335.46545 * 22 20 19 41 41 H 1.08996 * 110.24521 * 97.45889 * 22 20 19 42 42 H 0.97001 * 124.33260 * 196.99985 * 23 22 20 43 43 H 1.08998 * 110.48848 * 225.06953 * 26 24 23 44 44 H 1.08997 * 110.60384 * 102.47951 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5645 -1.2511 6 6 4.0209 -0.8951 -1.3697 7 6 5.2748 -1.4146 -0.7150 8 1 5.9418 -0.7328 -0.2083 9 6 5.5707 -2.7604 -0.7627 10 7 4.7588 -3.5907 -1.3801 11 14 7.1254 -3.4044 0.0483 12 1 7.0903 -3.0960 1.5006 13 1 7.2118 -4.8742 -0.1442 14 1 8.3103 -2.7545 -0.5671 15 16 4.4257 1.5132 -2.5319 16 8 3.6680 2.7109 -2.4291 17 8 4.4031 0.6752 -3.6793 18 7 6.0084 1.9394 -2.2952 19 6 7.0527 0.9120 -2.3031 20 6 8.4223 1.5781 -2.4488 21 1 8.5691 2.3360 -1.6793 22 6 8.5961 2.1822 -3.8599 23 7 10.0066 1.9676 -4.2061 24 6 10.5687 1.0393 -3.4129 25 8 11.7206 0.6673 -3.4874 26 6 9.5557 0.5267 -2.4133 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5682 0.8425 33 1 3.9785 2.1765 0.0906 34 1 3.1488 -1.3261 -0.8779 35 1 4.0187 -1.1742 -2.4234 36 1 4.9671 -4.5374 -1.4140 37 1 6.2435 2.8689 -2.1474 38 1 7.0185 0.3521 -1.3686 39 1 6.8881 0.2330 -3.1398 40 1 7.9506 1.6683 -4.5723 41 1 8.3687 3.2481 -3.8445 42 1 10.4732 2.4361 -4.9159 43 1 9.9956 0.4736 -1.4174 44 1 9.1790 -0.4504 -2.7155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463880483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:20 Heat of formation + Delta-G solvation = -158.098179 kcal Electronic energy + Delta-G solvation = -28696.778042 eV Core-core repulsion = 24583.079514 eV Total energy + Delta-G solvation = -4113.698529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32256 -37.73399 -37.05435 -36.63684 -35.38013 -35.24592 -34.65361 -32.57848 -31.28238 -29.49544 -27.69951 -26.77786 -25.68092 -25.10191 -22.85382 -21.80143 -20.91928 -20.58037 -18.90495 -17.51825 -17.18393 -17.01159 -16.57167 -16.40400 -15.88088 -15.66779 -15.33044 -14.97343 -14.83471 -14.48631 -14.36110 -14.23176 -13.62269 -13.43950 -13.22226 -12.80626 -12.64617 -12.43166 -12.31087 -12.04805 -11.89918 -11.68458 -11.57413 -11.39004 -11.31628 -11.21947 -11.09455 -10.96959 -10.88421 -10.63874 -10.40137 -10.06011 -9.89259 -9.80821 -9.29102 -9.21317 -9.08464 -8.45194 -8.03354 -6.07343 -4.13738 1.22219 2.57021 3.25808 3.27926 3.32106 3.34437 3.45927 4.07325 4.17016 4.29731 4.36974 4.41070 4.61821 4.96456 5.02400 5.25959 5.31026 5.35412 5.38735 5.43123 5.51286 5.54224 5.64826 5.65551 5.70017 5.78184 5.83253 5.91709 5.94352 6.12748 6.29794 6.34758 6.57151 6.69568 6.90054 7.21053 7.47894 7.54077 7.55908 7.76810 7.91203 8.18580 8.21332 8.90005 9.50813 11.00472 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004873 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.351888 B = 5745.055069 C = 7705.916127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.138 3.862 5 N -0.984 5.984 6 C 0.243 3.757 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.885 5.885 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.274 1.274 15 S 2.782 3.218 16 O -1.003 7.003 17 O -0.976 6.976 18 N -1.133 6.133 19 C 0.126 3.874 20 C -0.105 4.105 21 H 0.096 0.904 22 C 0.101 3.899 23 N -0.734 5.734 24 C 0.522 3.478 25 O -0.541 6.541 26 C -0.153 4.153 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.406 0.594 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.407 0.593 43 H 0.106 0.894 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 12.917 0.773 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.037 4.037 4 C 0.010 3.990 5 N -0.825 5.825 6 C 0.121 3.879 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.523 5.523 11 Si 0.714 3.286 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.199 1.199 15 S 2.790 3.210 16 O -0.987 6.987 17 O -0.959 6.959 18 N -0.891 5.891 19 C 0.000 4.000 20 C -0.126 4.126 21 H 0.114 0.886 22 C -0.024 4.024 23 N -0.389 5.389 24 C 0.309 3.691 25 O -0.418 6.418 26 C -0.194 4.194 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.246 0.754 43 H 0.124 0.876 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.485 12.305 -0.017 12.315 hybrid contribution 1.058 0.314 0.583 1.248 sum 1.543 12.619 0.565 12.726 Atomic orbital electron populations 1.22702 0.82395 1.02426 0.99101 1.88103 1.18401 1.27046 1.95156 1.23124 0.95446 0.85204 0.99933 1.21043 0.91289 0.97494 0.89131 1.57626 1.78767 1.19374 1.26764 1.19321 0.98172 0.71364 0.99017 1.21485 1.07540 0.92816 1.36034 0.92025 1.24925 0.96656 0.96886 0.95233 1.69932 1.36644 1.03741 1.41996 0.86757 0.83673 0.78149 0.79990 1.20291 1.21323 1.19900 1.01846 0.72638 0.72353 0.74143 1.93546 1.69041 1.48380 1.87774 1.93586 1.86281 1.68300 1.47743 1.56048 1.26065 1.15957 1.91032 1.21465 0.83960 0.89331 1.05221 1.22394 0.95228 0.98066 0.96881 0.88559 1.22284 0.81652 1.01681 0.96750 1.46275 1.13022 1.42673 1.36969 1.20948 0.87678 0.78431 0.82072 1.90742 1.18109 1.60768 1.72168 1.22397 0.95158 1.01082 1.00757 0.94618 0.89868 0.94816 0.93297 0.93050 0.89010 0.90584 0.92886 0.93104 0.92607 0.76211 0.88614 0.89531 0.90106 0.90200 0.75441 0.87575 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.53 9.07 -35.23 -0.32 -6.85 16 3 C 0.04 0.64 6.28 37.16 0.23 0.88 16 4 C 0.14 2.19 5.73 -4.05 -0.02 2.16 16 5 N -0.98 -18.58 2.82 -115.66 -0.33 -18.90 16 6 C 0.24 5.72 5.32 -5.19 -0.03 5.69 16 7 C -0.54 -13.00 8.56 -34.44 -0.29 -13.29 16 8 H 0.06 1.38 6.38 -52.48 -0.33 1.04 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 11 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 S 2.78 49.12 6.07 -107.50 -0.65 48.47 16 16 O -1.00 -18.28 17.08 -57.17 -0.98 -19.26 16 17 O -0.98 -21.00 16.02 -57.17 -0.92 -21.91 16 18 N -1.13 -14.78 5.93 -10.61 -0.06 -14.84 16 19 C 0.13 1.71 5.47 -4.04 -0.02 1.69 16 20 C -0.11 -1.09 3.20 -88.99 -0.29 -1.37 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 22 C 0.10 0.94 7.24 -3.09 -0.02 0.92 16 23 N -0.73 -7.61 6.24 -59.17 -0.37 -7.98 16 24 C 0.52 7.08 8.43 -10.87 -0.09 6.98 16 25 O -0.54 -9.51 18.03 5.56 0.10 -9.41 16 26 C -0.15 -1.83 6.42 -26.75 -0.17 -2.00 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 33 H 0.08 0.97 7.81 -51.92 -0.41 0.57 16 34 H 0.05 1.36 6.64 -51.92 -0.34 1.02 16 35 H 0.05 1.34 6.78 -51.93 -0.35 0.99 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.41 3.97 8.66 -34.48 -0.30 3.67 16 38 H 0.10 1.45 5.86 -51.93 -0.30 1.14 16 39 H 0.09 1.34 7.61 -51.92 -0.40 0.94 16 40 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.41 3.50 8.96 -40.82 -0.37 3.13 16 43 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.12 1.48 7.90 -51.93 -0.41 1.07 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -34.03 374.16 -8.40 -42.42 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.54 Total: 7.03 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 0.31 Total: 4.79 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.02 Total: -65.57 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -2.11 Total: -57.42 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.65 Total: 48.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.03 -8.40 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463880483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.677 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds