Wall clock time and date at job start Tue Mar 31 2020 19:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00010 * 2 1 4 4 C 1.52995 * 109.46830 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47728 * 65.02564 * 4 3 2 6 6 C 1.46505 * 119.99924 * 274.07478 * 5 4 3 7 7 C 1.50693 * 109.47048 * 279.96216 * 6 5 4 8 8 H 1.08004 * 120.00174 * 3.41942 * 7 6 5 9 9 C 1.37878 * 120.00255 * 183.41705 * 7 6 5 10 10 N 1.31524 * 119.99507 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00490 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46838 * 59.99907 * 11 9 7 13 13 H 1.48492 * 109.47517 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47316 * 300.00477 * 11 9 7 15 15 S 1.65596 * 120.00246 * 94.06774 * 5 4 3 16 16 O 1.42101 * 106.40342 * 330.13908 * 15 5 4 17 17 O 1.42096 * 106.40243 * 197.21593 * 15 5 4 18 18 N 1.65602 * 107.21564 * 83.67370 * 15 5 4 19 19 C 1.46504 * 119.99960 * 64.78944 * 18 15 5 20 20 C 1.52992 * 109.47318 * 164.63013 * 19 18 15 21 21 H 1.09004 * 110.85403 * 54.30086 * 20 19 18 22 22 C 1.54479 * 110.97555 * 290.51287 * 20 19 18 23 23 N 1.46819 * 105.44561 * 216.49474 * 22 20 19 24 24 C 1.34419 * 111.31704 * 16.95720 * 23 22 20 25 25 O 1.21278 * 124.93842 * 179.66186 * 24 23 22 26 26 C 1.51270 * 110.11698 * 359.62884 * 24 23 22 27 27 H 1.09001 * 109.46799 * 60.00444 * 1 2 3 28 28 H 1.09002 * 109.46743 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47303 * 300.00190 * 1 2 3 30 30 H 1.08995 * 109.46878 * 59.99916 * 3 2 1 31 31 H 1.08993 * 109.46854 * 299.99702 * 3 2 1 32 32 H 1.09005 * 109.47409 * 305.01683 * 4 3 2 33 33 H 1.09008 * 109.46909 * 185.02340 * 4 3 2 34 34 H 1.09007 * 109.46996 * 39.96218 * 6 5 4 35 35 H 1.09001 * 109.46920 * 159.95642 * 6 5 4 36 36 H 0.96998 * 119.99359 * 179.97438 * 10 9 7 37 37 H 0.97004 * 120.00245 * 245.06420 * 18 15 5 38 38 H 1.08999 * 109.47016 * 284.63575 * 19 18 15 39 39 H 1.09009 * 109.46810 * 44.63312 * 19 18 15 40 40 H 1.09007 * 110.24095 * 335.46545 * 22 20 19 41 41 H 1.08996 * 110.24521 * 97.45889 * 22 20 19 42 42 H 0.97001 * 124.33260 * 196.99985 * 23 22 20 43 43 H 1.08998 * 110.48848 * 225.06953 * 26 24 23 44 44 H 1.08997 * 110.60384 * 102.47951 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5645 -1.2511 6 6 4.0209 -0.8951 -1.3697 7 6 5.2748 -1.4146 -0.7150 8 1 5.9418 -0.7328 -0.2083 9 6 5.5707 -2.7604 -0.7627 10 7 4.7588 -3.5907 -1.3801 11 14 7.1254 -3.4044 0.0483 12 1 7.0903 -3.0960 1.5006 13 1 7.2118 -4.8742 -0.1442 14 1 8.3103 -2.7545 -0.5671 15 16 4.4257 1.5132 -2.5319 16 8 3.6680 2.7109 -2.4291 17 8 4.4031 0.6752 -3.6793 18 7 6.0084 1.9394 -2.2952 19 6 7.0527 0.9120 -2.3031 20 6 8.4223 1.5781 -2.4488 21 1 8.5691 2.3360 -1.6793 22 6 8.5961 2.1822 -3.8599 23 7 10.0066 1.9676 -4.2061 24 6 10.5687 1.0393 -3.4129 25 8 11.7206 0.6673 -3.4874 26 6 9.5557 0.5267 -2.4133 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5682 0.8425 33 1 3.9785 2.1765 0.0906 34 1 3.1488 -1.3261 -0.8779 35 1 4.0187 -1.1742 -2.4234 36 1 4.9671 -4.5374 -1.4140 37 1 6.2435 2.8689 -2.1474 38 1 7.0185 0.3521 -1.3686 39 1 6.8881 0.2330 -3.1398 40 1 7.9506 1.6683 -4.5723 41 1 8.3687 3.2481 -3.8445 42 1 10.4732 2.4361 -4.9159 43 1 9.9956 0.4736 -1.4174 44 1 9.1790 -0.4504 -2.7155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463880483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:19 Heat of formation + Delta-G solvation = -187.789745 kcal Electronic energy + Delta-G solvation = -28698.065565 eV Core-core repulsion = 24583.079514 eV Total energy + Delta-G solvation = -4114.986052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30211 -39.00251 -38.29806 -38.00025 -36.88995 -36.78394 -35.77285 -34.44546 -32.26115 -30.95423 -28.66312 -28.39067 -26.95378 -26.13850 -24.53123 -23.22546 -21.86844 -21.55411 -20.27594 -18.77860 -18.55100 -18.36676 -18.07565 -17.62838 -17.19693 -16.99521 -16.58688 -16.39941 -15.97553 -15.76073 -15.66720 -15.39634 -14.94269 -14.54062 -14.37392 -14.16494 -13.95779 -13.73901 -13.56710 -13.43689 -13.30259 -13.15366 -13.06416 -12.82983 -12.70318 -12.61910 -12.44984 -12.24013 -12.17978 -11.95206 -11.89368 -11.75393 -11.55197 -10.99414 -10.51234 -10.42821 -10.28814 -10.11278 -9.63989 -8.03822 -6.15818 -0.20835 1.51745 1.52125 1.53005 1.58696 2.07710 2.42594 2.51358 2.71105 3.04565 3.29423 3.33313 3.47713 3.58127 3.80669 4.02720 4.10845 4.27426 4.41162 4.45746 4.54424 4.55958 4.58889 4.62977 4.65412 4.68916 4.84992 4.88004 4.88989 4.99736 5.09660 5.18702 5.30329 5.58051 5.70670 5.82412 5.89465 5.99119 6.01123 6.26817 6.35858 6.45071 6.97320 7.22439 7.53131 9.04317 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004873 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.351888 B = 5745.055069 C = 7705.916127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.037 3.963 4 C 0.128 3.872 5 N -0.990 5.990 6 C 0.263 3.737 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.011 3.989 10 N -0.932 5.932 11 Si 0.946 3.054 12 H -0.268 1.268 13 H -0.300 1.300 14 H -0.254 1.254 15 S 2.797 3.203 16 O -1.005 7.005 17 O -1.018 7.018 18 N -1.109 6.109 19 C 0.128 3.872 20 C -0.092 4.092 21 H 0.130 0.870 22 C 0.098 3.902 23 N -0.719 5.719 24 C 0.517 3.483 25 O -0.588 6.588 26 C -0.155 4.155 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.427 0.573 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.417 0.583 43 H 0.117 0.883 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 15.698 2.176 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.041 4.041 4 C 0.002 3.998 5 N -0.830 5.830 6 C 0.139 3.861 7 C -0.568 4.568 8 H 0.101 0.899 9 C -0.188 4.188 10 N -0.572 5.572 11 Si 0.771 3.229 12 H -0.193 1.193 13 H -0.226 1.226 14 H -0.178 1.178 15 S 2.805 3.195 16 O -0.989 6.989 17 O -1.002 7.002 18 N -0.873 5.873 19 C 0.001 3.999 20 C -0.112 4.112 21 H 0.148 0.852 22 C -0.026 4.026 23 N -0.373 5.373 24 C 0.304 3.696 25 O -0.469 6.469 26 C -0.196 4.196 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.257 0.743 43 H 0.135 0.865 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.399 15.174 1.390 15.302 hybrid contribution 0.669 -0.459 0.120 0.820 sum 2.068 14.715 1.510 14.936 Atomic orbital electron populations 1.22867 0.80644 1.03036 1.00585 1.88054 1.20587 1.28645 1.95449 1.23244 0.95029 0.84655 1.01166 1.21373 0.92095 0.98929 0.87384 1.57490 1.79712 1.17452 1.28338 1.18737 0.97044 0.74115 0.96221 1.21842 1.07444 0.92910 1.34600 0.89924 1.25752 0.99551 0.97477 0.95980 1.70097 1.38916 1.03803 1.44366 0.85793 0.80796 0.76806 0.79473 1.19323 1.22645 1.17786 1.01196 0.73418 0.71644 0.73195 1.93536 1.69861 1.47903 1.87638 1.93540 1.87178 1.69609 1.49872 1.55502 1.24133 1.17164 1.90456 1.21380 0.85628 0.89334 1.03556 1.22331 0.92262 0.97997 0.98616 0.85227 1.22439 0.80611 1.03730 0.95812 1.46238 1.13329 1.41419 1.36322 1.21192 0.87190 0.78596 0.82604 1.90716 1.20103 1.62481 1.73640 1.22412 0.95310 1.00940 1.00942 0.94146 0.89862 0.92198 0.89806 0.93871 0.89589 0.86823 0.95710 0.96862 0.93091 0.73654 0.89841 0.92010 0.90916 0.86597 0.74293 0.86497 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.42 9.07 -148.98 -1.35 -15.77 16 3 C 0.04 1.09 6.28 71.98 0.45 1.54 16 4 C 0.13 3.83 5.73 86.38 0.49 4.33 16 5 N -0.99 -36.90 2.82 -519.83 -1.47 -38.37 16 6 C 0.26 12.70 5.32 85.63 0.46 13.16 16 7 C -0.53 -25.52 8.56 25.60 0.22 -25.30 16 8 H 0.08 3.56 6.38 -2.91 -0.02 3.54 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -53.58 13.29 21.45 0.28 -53.30 16 11 Si 0.95 40.20 29.54 68.60 2.03 42.23 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 14 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 15 S 2.80 95.88 6.07 -56.49 -0.34 95.54 16 16 O -1.01 -34.51 17.08 -128.00 -2.19 -36.70 16 17 O -1.02 -44.58 16.02 -128.00 -2.05 -46.63 16 18 N -1.11 -25.97 5.93 -187.49 -1.11 -27.08 16 19 C 0.13 3.20 5.47 86.38 0.47 3.67 16 20 C -0.09 -1.60 3.20 -9.74 -0.03 -1.63 16 21 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 22 C 0.10 1.51 7.24 86.82 0.63 2.13 16 23 N -0.72 -13.17 6.24 -459.70 -2.87 -16.04 16 24 C 0.52 13.26 8.43 87.89 0.74 14.00 16 25 O -0.59 -20.43 18.03 -3.02 -0.05 -20.49 16 26 C -0.16 -3.42 6.42 30.59 0.20 -3.22 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.32 7.86 -2.39 -0.02 1.30 16 32 H 0.09 2.68 8.09 -2.38 -0.02 2.66 16 33 H 0.11 2.49 7.81 -2.38 -0.02 2.48 16 34 H 0.02 1.34 6.64 -2.38 -0.02 1.32 16 35 H 0.01 0.74 6.78 -2.39 -0.02 0.73 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.43 6.50 8.66 -96.74 -0.84 5.66 16 38 H 0.08 2.34 5.86 -2.39 -0.01 2.33 16 39 H 0.06 1.89 7.61 -2.38 -0.02 1.87 16 40 H 0.07 1.31 7.79 -2.38 -0.02 1.29 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.42 6.18 8.96 -92.71 -0.83 5.35 16 43 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.10 2.55 7.90 -2.39 -0.02 2.54 16 Total: -1.00 -76.95 374.16 -4.41 -81.36 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.63 Total: 23.60 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.34 Total: 11.64 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -5.16 Total: -134.79 kcal Atomic # 8 Polarization: -113.95 SS G_CDS: -5.64 Total: -119.59 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 95.88 SS G_CDS: -0.34 Total: 95.54 kcal Total: -76.95 -4.41 -81.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463880483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.429 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds