Wall clock time and date at job start Tue Mar 31 2020 19:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20830 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47148 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47507 * 179.97438 * 6 5 3 8 8 C 1.36871 * 119.99884 * 318.10533 * 7 6 5 9 9 H 1.07996 * 120.00411 * 41.17468 * 8 7 6 10 10 C 1.39051 * 119.99331 * 221.18213 * 8 7 6 11 11 N 1.31365 * 119.99936 * 72.12496 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 252.11493 * 10 8 7 13 13 H 1.48500 * 109.46936 * 64.92896 * 12 10 8 14 14 H 1.48502 * 109.47347 * 184.92808 * 12 10 8 15 15 H 1.48505 * 109.47316 * 304.93203 * 12 10 8 16 16 C 1.34783 * 119.99969 * 138.09186 * 7 6 5 17 17 O 1.21589 * 119.99743 * 163.09318 * 16 7 6 18 18 C 1.47738 * 120.00011 * 343.09514 * 16 7 6 19 19 C 1.39685 * 120.11668 * 323.64279 * 18 16 7 20 20 C 1.37961 * 119.98796 * 180.02562 * 19 18 16 21 21 C 1.38274 * 120.22731 * 359.73085 * 20 19 18 22 22 C 1.38965 * 120.23245 * 0.54465 * 21 20 19 23 23 N 1.39975 * 119.99392 * 179.72958 * 22 21 20 24 24 C 1.34775 * 120.00221 * 215.55478 * 23 22 21 25 25 N 1.34772 * 120.00646 * 175.64588 * 24 23 22 26 26 O 1.21588 * 119.99722 * 355.64616 * 24 23 22 27 27 C 1.38610 * 120.01070 * 359.45322 * 22 21 20 28 28 H 1.08995 * 109.46910 * 60.00007 * 1 2 3 29 29 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46678 * 300.00024 * 1 2 3 31 31 H 1.09001 * 109.47034 * 60.00119 * 5 3 2 32 32 H 1.08994 * 109.47130 * 299.99742 * 5 3 2 33 33 H 1.09006 * 109.47031 * 59.99850 * 6 5 3 34 34 H 1.09001 * 109.47329 * 300.00392 * 6 5 3 35 35 H 0.97001 * 119.99543 * 184.93779 * 11 10 8 36 36 H 1.07998 * 120.00835 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.88606 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.88282 * 180.29194 * 21 20 19 39 39 H 0.96999 * 120.00077 * 35.54958 * 23 22 21 40 40 H 0.97004 * 120.00465 * 180.02562 * 25 24 23 41 41 H 0.97002 * 119.99568 * 359.72497 * 25 24 23 42 42 H 1.08002 * 120.11006 * 180.25307 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1927 1.9739 0.7908 9 1 5.9070 0.9362 0.8802 10 6 7.3017 2.4517 1.4804 11 7 7.1401 3.2419 2.5172 12 14 9.0212 1.9696 0.9324 13 1 9.2856 2.5291 -0.4175 14 1 10.0163 2.5072 1.8947 15 1 9.1286 0.4892 0.8844 16 6 6.0906 3.7214 -0.7810 17 8 7.2539 4.0043 -0.5683 18 6 5.3650 4.3670 -1.8943 19 6 4.4299 3.6411 -2.6359 20 6 3.7543 4.2464 -3.6753 21 6 3.9950 5.5727 -3.9833 22 6 4.9274 6.3020 -3.2553 23 7 5.1713 7.6428 -3.5751 24 6 6.4159 8.1470 -3.4615 25 7 6.6690 9.4119 -3.8521 26 8 7.3107 7.4608 -3.0065 27 6 5.6118 5.7036 -2.2090 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 3.6107 3.2365 0.8889 34 1 3.6100 3.2361 -0.8910 35 1 7.9129 3.6327 2.9543 36 1 4.2359 2.6062 -2.3957 37 1 3.0314 3.6838 -4.2473 38 1 3.4595 6.0424 -4.7951 39 1 4.4445 8.2090 -3.8785 40 1 7.5649 9.7747 -3.7707 41 1 5.9560 9.9580 -4.2188 42 1 6.3338 6.2701 -1.6396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471251836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:31 Heat of formation + Delta-G solvation = -82.699325 kcal Electronic energy + Delta-G solvation = -29137.739983 eV Core-core repulsion = 24891.867042 eV Total energy + Delta-G solvation = -4245.872940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.51181 -40.21691 -39.05673 -37.47737 -36.35728 -34.70883 -34.56221 -33.67952 -32.54500 -30.66532 -30.27875 -29.10491 -27.55215 -25.45023 -23.79210 -23.01865 -22.30795 -20.85940 -20.28869 -19.80956 -18.34707 -18.12052 -17.35192 -16.81682 -16.49426 -16.14624 -16.02918 -15.72585 -15.28866 -14.89231 -14.74210 -14.50953 -14.24624 -13.89109 -13.80428 -13.37434 -13.19224 -13.07465 -12.70087 -12.40256 -12.22559 -12.01792 -11.89572 -11.46054 -11.37355 -11.26231 -10.92472 -10.68792 -10.51203 -10.38185 -10.21882 -10.13473 -9.94889 -9.91442 -9.76185 -8.54276 -8.40357 -8.06420 -7.79480 -7.66304 -6.52170 -3.62164 1.44100 1.73668 2.48223 2.74151 2.92180 3.12828 3.48820 3.59707 3.78134 3.90383 4.19973 4.34321 4.56721 4.87395 4.94769 5.10541 5.12935 5.19317 5.22462 5.30024 5.48595 5.51754 5.59664 5.62412 5.79574 5.82535 5.92033 6.09903 6.24014 6.39910 6.47109 6.56797 6.60794 6.71153 6.72902 6.75411 6.82767 7.00002 7.34295 7.48625 7.79708 7.98960 8.19727 8.52967 8.88233 9.17181 9.56781 10.20159 10.32932 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008435 B = 0.004756 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.781247 B = 5886.407113 C = 8667.140859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.512 6.512 5 C -0.119 4.119 6 C 0.101 3.899 7 N -0.420 5.420 8 C -0.476 4.476 9 H 0.094 0.906 10 C 0.175 3.825 11 N -0.744 5.744 12 Si 0.860 3.140 13 H -0.256 1.256 14 H -0.300 1.300 15 H -0.282 1.282 16 C 0.486 3.514 17 O -0.547 6.547 18 C -0.077 4.077 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.145 4.145 22 C 0.146 3.854 23 N -0.684 5.684 24 C 0.698 3.302 25 N -0.865 5.865 26 O -0.561 6.561 27 C -0.077 4.077 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.271 0.729 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.404 0.596 40 H 0.417 0.583 41 H 0.395 0.605 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 5.035 -11.694 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.308 3.692 4 O -0.399 6.399 5 C -0.157 4.157 6 C -0.022 4.022 7 N -0.140 5.140 8 C -0.594 4.594 9 H 0.112 0.888 10 C -0.053 4.053 11 N -0.367 5.367 12 Si 0.684 3.316 13 H -0.181 1.181 14 H -0.227 1.227 15 H -0.208 1.208 16 C 0.276 3.724 17 O -0.429 6.429 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.166 4.166 22 C 0.052 3.948 23 N -0.333 5.333 24 C 0.396 3.604 25 N -0.434 5.434 26 O -0.436 6.436 27 C -0.098 4.098 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.238 0.762 40 H 0.249 0.751 41 H 0.223 0.777 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.378 4.880 -10.922 16.509 hybrid contribution 0.116 0.784 -0.489 0.932 sum -11.262 5.664 -11.411 17.004 Atomic orbital electron populations 1.23189 0.77182 1.03203 1.02319 1.86550 1.22836 1.34139 1.84412 1.24168 0.92525 0.80934 0.71599 1.90643 1.67440 1.36281 1.45569 1.21695 0.85265 1.01812 1.06927 1.21676 0.84950 0.92883 1.02651 1.43136 1.02211 1.32872 1.35789 1.18218 1.14467 0.91249 1.35422 0.88837 1.25091 1.01194 0.91071 0.87895 1.70771 1.34430 1.22267 1.09271 0.87364 0.84214 0.77988 0.82026 1.18075 1.22678 1.20824 1.18064 0.86633 0.84585 0.83123 1.90595 1.17598 1.62710 1.72028 1.20404 0.95881 0.93827 0.98002 1.21383 0.95683 1.00390 0.95636 1.20765 1.00234 0.94143 0.97700 1.20784 1.01162 0.94592 1.00058 1.17345 0.99026 0.82979 0.95410 1.42448 1.09230 1.10716 1.70921 1.16037 0.82991 0.82256 0.79068 1.42958 1.15768 1.13599 1.71102 1.91113 1.44393 1.58630 1.49417 1.21381 0.98886 0.94598 0.94964 0.92154 0.88515 0.92111 0.87742 0.86026 0.92278 0.89935 0.91771 0.85361 0.85758 0.86193 0.76159 0.75069 0.77713 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.08 10.57 -39.26 -0.41 -5.50 16 3 C 0.46 7.48 7.96 36.01 0.29 7.77 16 4 O -0.51 -9.28 15.73 -18.75 -0.29 -9.57 16 5 C -0.12 -2.03 5.22 -27.88 -0.15 -2.17 16 6 C 0.10 2.08 4.34 -4.04 -0.02 2.06 16 7 N -0.42 -10.45 2.89 -115.92 -0.33 -10.78 16 8 C -0.48 -12.81 8.43 -15.00 -0.13 -12.94 16 9 H 0.09 2.40 6.67 -52.49 -0.35 2.05 16 10 C 0.17 4.94 3.79 -17.45 -0.07 4.87 16 11 N -0.74 -21.35 13.95 55.50 0.77 -20.58 16 12 Si 0.86 22.73 27.91 -169.99 -4.74 17.99 16 13 H -0.26 -7.36 6.78 56.52 0.38 -6.98 16 14 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 C 0.49 12.71 7.10 -12.37 -0.09 12.62 16 17 O -0.55 -16.54 13.31 5.29 0.07 -16.47 16 18 C -0.08 -1.66 5.23 -105.00 -0.55 -2.21 16 19 C -0.11 -1.96 7.37 -39.14 -0.29 -2.24 16 20 C -0.11 -1.56 10.02 -39.67 -0.40 -1.95 16 21 C -0.14 -1.95 9.96 -39.30 -0.39 -2.34 16 22 C 0.15 2.35 6.28 -83.73 -0.53 1.82 16 23 N -0.68 -8.47 5.34 -14.26 -0.08 -8.54 16 24 C 0.70 9.96 8.67 -86.92 -0.75 9.21 16 25 N -0.87 -7.30 8.88 27.63 0.25 -7.05 16 26 O -0.56 -11.48 14.66 5.29 0.08 -11.41 16 27 C -0.08 -1.60 8.26 -38.97 -0.32 -1.92 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 1.61 8.08 -51.93 -0.42 1.19 16 32 H 0.12 2.16 6.80 -51.93 -0.35 1.81 16 33 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.08 1.57 4.07 -51.93 -0.21 1.36 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 2.12 6.54 -52.49 -0.34 1.78 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.40 3.13 8.84 -40.82 -0.36 2.77 16 40 H 0.42 3.20 8.93 -40.82 -0.36 2.83 16 41 H 0.40 1.75 8.85 -40.82 -0.36 1.39 16 42 H 0.14 3.44 6.24 -52.49 -0.33 3.11 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -38.64 359.37 -6.38 -45.02 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.78 Total: 7.49 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -2.32 Total: 13.99 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.61 Total: -46.96 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.56 Total: -42.95 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.74 Total: 17.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.64 -6.38 -45.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471251836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.675 kcal (2) G-P(sol) polarization free energy of solvation -38.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds