Wall clock time and date at job start Tue Mar 31 2020 19:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20830 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47148 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47507 * 179.97438 * 6 5 3 8 8 C 1.36871 * 119.99884 * 318.10533 * 7 6 5 9 9 H 1.07996 * 120.00411 * 41.17468 * 8 7 6 10 10 C 1.39051 * 119.99331 * 221.18213 * 8 7 6 11 11 N 1.31365 * 119.99936 * 72.12496 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 252.11493 * 10 8 7 13 13 H 1.48500 * 109.46936 * 64.92896 * 12 10 8 14 14 H 1.48502 * 109.47347 * 184.92808 * 12 10 8 15 15 H 1.48505 * 109.47316 * 304.93203 * 12 10 8 16 16 C 1.34783 * 119.99969 * 138.09186 * 7 6 5 17 17 O 1.21589 * 119.99743 * 163.09318 * 16 7 6 18 18 C 1.47738 * 120.00011 * 343.09514 * 16 7 6 19 19 C 1.39685 * 120.11668 * 323.64279 * 18 16 7 20 20 C 1.37961 * 119.98796 * 180.02562 * 19 18 16 21 21 C 1.38274 * 120.22731 * 359.73085 * 20 19 18 22 22 C 1.38965 * 120.23245 * 0.54465 * 21 20 19 23 23 N 1.39975 * 119.99392 * 179.72958 * 22 21 20 24 24 C 1.34775 * 120.00221 * 215.55478 * 23 22 21 25 25 N 1.34772 * 120.00646 * 175.64588 * 24 23 22 26 26 O 1.21588 * 119.99722 * 355.64616 * 24 23 22 27 27 C 1.38610 * 120.01070 * 359.45322 * 22 21 20 28 28 H 1.08995 * 109.46910 * 60.00007 * 1 2 3 29 29 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46678 * 300.00024 * 1 2 3 31 31 H 1.09001 * 109.47034 * 60.00119 * 5 3 2 32 32 H 1.08994 * 109.47130 * 299.99742 * 5 3 2 33 33 H 1.09006 * 109.47031 * 59.99850 * 6 5 3 34 34 H 1.09001 * 109.47329 * 300.00392 * 6 5 3 35 35 H 0.97001 * 119.99543 * 184.93779 * 11 10 8 36 36 H 1.07998 * 120.00835 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.88606 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.88282 * 180.29194 * 21 20 19 39 39 H 0.96999 * 120.00077 * 35.54958 * 23 22 21 40 40 H 0.97004 * 120.00465 * 180.02562 * 25 24 23 41 41 H 0.97002 * 119.99568 * 359.72497 * 25 24 23 42 42 H 1.08002 * 120.11006 * 180.25307 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1927 1.9739 0.7908 9 1 5.9070 0.9362 0.8802 10 6 7.3017 2.4517 1.4804 11 7 7.1401 3.2419 2.5172 12 14 9.0212 1.9696 0.9324 13 1 9.2856 2.5291 -0.4175 14 1 10.0163 2.5072 1.8947 15 1 9.1286 0.4892 0.8844 16 6 6.0906 3.7214 -0.7810 17 8 7.2539 4.0043 -0.5683 18 6 5.3650 4.3670 -1.8943 19 6 4.4299 3.6411 -2.6359 20 6 3.7543 4.2464 -3.6753 21 6 3.9950 5.5727 -3.9833 22 6 4.9274 6.3020 -3.2553 23 7 5.1713 7.6428 -3.5751 24 6 6.4159 8.1470 -3.4615 25 7 6.6690 9.4119 -3.8521 26 8 7.3107 7.4608 -3.0065 27 6 5.6118 5.7036 -2.2090 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 3.6107 3.2365 0.8889 34 1 3.6100 3.2361 -0.8910 35 1 7.9129 3.6327 2.9543 36 1 4.2359 2.6062 -2.3957 37 1 3.0314 3.6838 -4.2473 38 1 3.4595 6.0424 -4.7951 39 1 4.4445 8.2090 -3.8785 40 1 7.5649 9.7747 -3.7707 41 1 5.9560 9.9580 -4.2188 42 1 6.3338 6.2701 -1.6396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471251836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:30 Heat of formation + Delta-G solvation = -114.355052 kcal Electronic energy + Delta-G solvation = -29139.112678 eV Core-core repulsion = 24891.867042 eV Total energy + Delta-G solvation = -4247.245636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77502 -41.44850 -40.64155 -38.99145 -37.61504 -36.57420 -35.86551 -34.78827 -34.45333 -32.16186 -31.81077 -30.38289 -28.57603 -27.32279 -25.30921 -24.28916 -23.80613 -22.03645 -21.65246 -21.54449 -19.60768 -19.33142 -18.71242 -18.20911 -17.79754 -17.49794 -17.30271 -17.08344 -16.77947 -16.49199 -16.17312 -16.08302 -15.81469 -15.53784 -15.07961 -14.78764 -14.64454 -14.43324 -14.12909 -13.97302 -13.94001 -13.59433 -13.29446 -13.08459 -12.77643 -12.65868 -12.58191 -12.44973 -12.11429 -12.02535 -11.71784 -11.53790 -11.47654 -11.17319 -10.77264 -10.61674 -10.14081 -9.80125 -9.75330 -9.08211 -8.64710 -5.73934 0.08506 0.40319 1.21497 1.32228 1.44202 1.63863 1.72762 1.76053 1.95285 2.14796 2.30699 2.74578 2.95802 3.14334 3.51536 3.83364 3.95329 4.04442 4.11580 4.19179 4.26096 4.37898 4.40512 4.41971 4.52709 4.59806 4.63035 4.77928 4.91958 5.01653 5.07683 5.26162 5.35609 5.36949 5.41533 5.47207 5.56757 5.84219 5.90581 6.05143 6.16231 6.76932 6.83426 6.97824 7.16164 7.52387 7.53684 8.14389 8.23463 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008435 B = 0.004756 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.781247 B = 5886.407113 C = 8667.140859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.477 3.523 4 O -0.534 6.534 5 C -0.111 4.111 6 C 0.107 3.893 7 N -0.428 5.428 8 C -0.488 4.488 9 H 0.106 0.894 10 C 0.147 3.853 11 N -0.775 5.775 12 Si 0.894 3.106 13 H -0.298 1.298 14 H -0.296 1.296 15 H -0.256 1.256 16 C 0.472 3.528 17 O -0.605 6.605 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.093 4.093 21 C -0.116 4.116 22 C 0.148 3.852 23 N -0.666 5.666 24 C 0.690 3.310 25 N -0.835 5.835 26 O -0.631 6.631 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.272 0.728 36 H 0.136 0.864 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.430 0.570 40 H 0.423 0.577 41 H 0.419 0.581 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 4.858 -15.069 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.149 4.149 6 C -0.015 4.015 7 N -0.147 5.147 8 C -0.606 4.606 9 H 0.123 0.877 10 C -0.077 4.077 11 N -0.400 5.400 12 Si 0.719 3.281 13 H -0.226 1.226 14 H -0.223 1.223 15 H -0.180 1.180 16 C 0.264 3.736 17 O -0.491 6.491 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.111 4.111 21 C -0.136 4.136 22 C 0.052 3.948 23 N -0.317 5.317 24 C 0.389 3.611 25 N -0.405 5.405 26 O -0.511 6.511 27 C -0.129 4.129 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.270 0.730 40 H 0.256 0.744 41 H 0.251 0.749 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.216 4.727 -14.314 21.419 hybrid contribution 1.127 0.959 0.394 1.531 sum -14.090 5.686 -13.920 20.606 Atomic orbital electron populations 1.23570 0.74725 1.05683 1.02632 1.86519 1.25117 1.32509 1.83751 1.23693 0.91815 0.81283 0.71116 1.90638 1.67765 1.37147 1.46815 1.21466 0.86698 0.99159 1.07553 1.21687 0.82010 0.95461 1.02374 1.43252 1.04018 1.32346 1.35089 1.18512 1.15000 0.92299 1.34815 0.87670 1.25574 1.02923 0.91275 0.87975 1.70797 1.34830 1.24184 1.10216 0.86775 0.82879 0.78939 0.79465 1.22606 1.22309 1.18043 1.18937 0.86456 0.84262 0.83916 1.90535 1.20285 1.64505 1.73790 1.20059 0.98668 0.94755 0.98090 1.21509 0.95024 1.00601 0.96333 1.21324 0.99307 0.94604 0.95903 1.21375 0.98749 0.94015 0.99485 1.17446 0.98598 0.84555 0.94154 1.42202 1.09519 1.09875 1.70135 1.16369 0.82782 0.83279 0.78688 1.42665 1.16976 1.11614 1.69252 1.91099 1.46650 1.60861 1.52453 1.21128 0.99888 0.94633 0.97205 0.91385 0.85016 0.92324 0.85717 0.86893 0.94642 0.88111 0.91673 0.84615 0.80808 0.80563 0.72988 0.74356 0.74872 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -9.23 10.57 -51.43 -0.54 -9.77 16 3 C 0.48 14.52 7.96 71.24 0.57 15.09 16 4 O -0.53 -18.49 15.73 21.95 0.35 -18.14 16 5 C -0.11 -3.69 5.22 29.85 0.16 -3.54 16 6 C 0.11 4.44 4.34 86.38 0.38 4.82 16 7 N -0.43 -22.17 2.89 -638.92 -1.85 -24.01 16 8 C -0.49 -27.22 8.43 84.10 0.71 -26.51 16 9 H 0.11 5.48 6.67 -2.91 -0.02 5.46 16 10 C 0.15 8.67 3.79 84.96 0.32 8.99 16 11 N -0.77 -46.76 13.95 21.68 0.30 -46.46 16 12 Si 0.89 48.86 27.91 68.60 1.91 50.78 16 13 H -0.30 -18.34 6.78 99.48 0.67 -17.66 16 14 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 15 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 16 C 0.47 26.23 7.10 86.75 0.62 26.85 16 17 O -0.60 -39.57 13.31 -4.00 -0.05 -39.62 16 18 C -0.11 -4.98 5.23 -20.11 -0.11 -5.09 16 19 C -0.12 -3.84 7.37 22.55 0.17 -3.67 16 20 C -0.09 -2.17 10.02 22.21 0.22 -1.94 16 21 C -0.12 -2.50 9.96 22.45 0.22 -2.28 16 22 C 0.15 4.46 6.28 38.10 0.24 4.70 16 23 N -0.67 -14.98 5.34 -317.28 -1.69 -16.67 16 24 C 0.69 19.41 8.67 179.06 1.55 20.97 16 25 N -0.83 -12.60 8.88 -184.75 -1.64 -14.24 16 26 O -0.63 -27.31 14.66 -3.99 -0.06 -27.37 16 27 C -0.11 -4.63 8.26 22.67 0.19 -4.44 16 28 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.12 3.64 8.08 -2.39 -0.02 3.62 16 32 H 0.11 4.00 6.80 -2.39 -0.02 3.99 16 33 H 0.04 1.62 8.10 -2.38 -0.02 1.60 16 34 H 0.10 3.80 4.07 -2.39 -0.01 3.79 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.14 4.22 6.54 -2.91 -0.02 4.20 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.43 4.83 8.84 -92.71 -0.82 4.01 16 40 H 0.42 5.98 8.93 -92.71 -0.83 5.15 16 41 H 0.42 2.34 8.85 -92.71 -0.82 1.52 16 42 H 0.10 5.08 6.24 -2.91 -0.02 5.06 16 Total: -1.00 -95.24 359.37 1.78 -93.46 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -1.38 Total: 16.44 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 6.43 Total: 35.62 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -4.88 Total: -101.39 kcal Atomic # 8 Polarization: -94.60 SS G_CDS: -0.31 Total: -94.91 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.91 Total: 50.78 kcal Total: -95.24 1.78 -93.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471251836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.891 kcal (2) G-P(sol) polarization free energy of solvation -95.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds