Wall clock time and date at job start Tue Mar 31 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81406 * 109.47078 * 2 1 4 4 O 1.42097 * 110.54242 * 68.37978 * 3 2 1 5 5 O 1.42100 * 110.54304 * 291.62695 * 3 2 1 6 6 N 1.65596 * 104.44797 * 180.02562 * 3 2 1 7 7 C 1.46505 * 119.99941 * 65.00238 * 6 3 2 8 8 C 1.50703 * 109.47064 * 164.99860 * 7 6 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 O 1.42908 * 110.88441 * 297.57083 * 12 11 10 14 14 C 1.55154 * 111.00407 * 173.65055 * 12 11 10 15 15 C 1.54328 * 102.94320 * 206.42236 * 14 12 11 16 16 N 1.47021 * 107.26926 * 22.19131 * 15 14 12 17 17 C 1.36936 * 125.64956 * 181.09726 * 16 15 14 18 18 H 1.08001 * 120.00106 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99908 * 359.95628 * 17 16 15 20 20 N 1.31617 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46923 * 90.00036 * 21 19 17 23 23 H 1.48494 * 109.47163 * 210.00021 * 21 19 17 24 24 H 1.48504 * 109.46896 * 330.00440 * 21 19 17 25 25 C 1.47424 * 108.70554 * 1.05829 * 16 15 14 26 26 H 1.09004 * 109.46523 * 299.99464 * 1 2 3 27 27 H 1.08996 * 109.47442 * 59.99434 * 1 2 3 28 28 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46523 * 240.00536 * 2 1 3 30 30 H 1.08991 * 109.47592 * 120.00092 * 2 1 3 31 31 H 0.96997 * 120.00145 * 244.99357 * 6 3 2 32 32 H 1.09002 * 109.47068 * 284.99828 * 7 6 3 33 33 H 1.09001 * 109.47372 * 44.99916 * 7 6 3 34 34 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 36 36 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 37 37 H 0.96696 * 113.99665 * 59.30287 * 13 12 11 38 38 H 1.08996 * 110.71983 * 324.78063 * 14 12 11 39 39 H 1.09000 * 110.72277 * 88.06040 * 14 12 11 40 40 H 1.09003 * 109.88087 * 262.77561 * 15 14 12 41 41 H 1.08995 * 110.01365 * 141.67594 * 15 14 12 42 42 H 0.97000 * 119.99998 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.37275 * 217.03387 * 25 16 15 44 44 H 1.09001 * 110.45743 * 94.75448 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9392 1.2790 -1.0794 9 8 6.3758 1.9364 -0.1585 10 7 6.7710 0.8281 -2.0392 11 6 8.2027 1.1306 -1.9693 12 6 8.9152 0.5062 -3.1707 13 8 8.7927 -0.9175 -3.1521 14 6 10.4051 0.9364 -3.2189 15 6 10.7471 0.8301 -4.7200 16 7 9.4813 0.9141 -5.4631 17 6 9.3481 0.8386 -6.8239 18 1 8.3698 0.9111 -7.2756 19 6 10.4706 0.6691 -7.6227 20 7 11.6628 0.5805 -7.0722 21 14 10.2889 0.5653 -9.4790 22 1 10.3853 1.9274 -10.0628 23 1 11.3688 -0.2890 -10.0351 24 1 8.9682 -0.0249 -9.8149 25 6 8.3789 1.0922 -4.5006 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2988 1.8765 0.7604 32 1 4.3227 -0.1131 -1.1373 33 1 4.0528 1.3772 -2.0724 34 1 6.4217 0.3026 -2.7760 35 1 8.3468 2.2110 -1.9823 36 1 8.6162 0.7199 -1.0482 37 1 7.8791 -1.2339 -3.1713 38 1 10.5219 1.9618 -2.8685 39 1 11.0224 0.2549 -2.6336 40 1 11.2334 -0.1241 -4.9228 41 1 11.4034 1.6499 -5.0120 42 1 12.4472 0.4625 -7.6305 43 1 7.4964 0.5431 -4.8286 44 1 8.1442 2.1500 -4.3816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484221187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:55 Heat of formation + Delta-G solvation = -126.759660 kcal Electronic energy + Delta-G solvation = -27175.009898 eV Core-core repulsion = 23062.670309 eV Total energy + Delta-G solvation = -4112.339589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19246 -38.60707 -37.49960 -36.35461 -35.36890 -35.01581 -34.30346 -33.68170 -32.17226 -29.87380 -28.79850 -27.14495 -25.49846 -24.59152 -23.52287 -21.14654 -20.19334 -19.99643 -19.77436 -18.62997 -17.74021 -16.99841 -16.79013 -16.74328 -16.18024 -15.99098 -15.77477 -15.12125 -14.74222 -14.61343 -14.51416 -14.00864 -13.93774 -13.70423 -13.55471 -13.18488 -13.02751 -12.92034 -12.50930 -12.45800 -12.38568 -12.28639 -12.10504 -11.97188 -11.76952 -11.12358 -11.03408 -10.92555 -10.79621 -10.49255 -10.34266 -10.15491 -10.09769 -9.93510 -9.78961 -9.50114 -9.28039 -8.62690 -6.87745 -5.75132 -3.09072 -0.21756 2.18892 2.30500 2.90838 3.35474 3.37570 3.42153 3.44512 3.71767 4.03814 4.22035 4.28645 4.41602 4.43679 4.61545 4.67058 4.76608 4.81688 5.00746 5.05931 5.12936 5.15210 5.30112 5.39668 5.46839 5.59322 5.75084 5.86869 6.11419 6.13711 6.29987 6.37384 6.48489 6.54076 6.55238 7.18033 7.49516 7.59595 7.79618 7.86978 7.92208 8.21417 9.16905 9.77104 10.41751 11.36538 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002259 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.540245 B =12391.889248 C =13224.515731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.615 3.385 4 O -0.953 6.953 5 O -0.952 6.952 6 N -1.109 6.109 7 C 0.093 3.907 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.722 5.722 11 C 0.104 3.896 12 C 0.101 3.899 13 O -0.536 6.536 14 C -0.128 4.128 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.117 3.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.428 0.572 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.402 0.598 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.363 0.637 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.718 -4.000 15.336 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.706 3.294 4 O -0.943 6.943 5 O -0.942 6.942 6 N -0.871 5.871 7 C -0.037 4.037 8 C 0.297 3.703 9 O -0.408 6.408 10 N -0.375 5.375 11 C -0.020 4.020 12 C 0.059 3.941 13 O -0.340 6.340 14 C -0.166 4.166 15 C 0.056 3.944 16 N -0.324 5.324 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.010 4.010 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.266 0.734 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.237 0.763 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.208 0.792 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.139 -2.773 15.658 24.122 hybrid contribution -0.363 -1.018 -1.113 1.551 sum -18.501 -3.791 14.546 23.838 Atomic orbital electron populations 1.21511 0.90286 1.05232 1.03634 1.30520 1.07516 1.26359 1.11848 1.04976 0.72688 0.77255 0.74458 1.93625 1.82744 1.72854 1.45062 1.93624 1.83122 1.71886 1.45532 1.55399 1.25947 1.78039 1.27751 1.21124 0.91995 0.99551 0.91051 1.20302 0.87984 0.79668 0.82333 1.90715 1.77353 1.38765 1.33958 1.45925 1.08898 1.55786 1.26842 1.22104 0.78701 1.01562 0.99674 1.22735 0.97741 0.80915 0.92729 1.86663 1.30521 1.19956 1.96818 1.22909 0.92031 1.00142 1.01567 1.21147 0.88202 1.01332 0.83693 1.44339 1.00822 1.85703 1.01565 1.19013 0.93446 1.43445 0.80032 0.90492 1.24813 0.95355 1.01943 0.98210 1.69956 0.97349 1.55921 1.33457 0.86106 0.77025 0.77505 0.84991 1.21577 1.21646 1.20706 1.22136 0.92553 0.97300 0.89051 0.90885 0.90765 0.89874 0.84895 0.84734 0.73383 0.88548 0.86853 0.76328 0.90123 0.90542 0.79166 0.90863 0.90904 0.93123 0.93710 0.93669 0.94368 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.92 37.16 0.37 -0.23 16 2 C -0.63 -2.38 6.79 37.16 0.25 -2.13 16 3 S 2.61 20.02 5.46 -107.50 -0.59 19.43 16 4 O -0.95 -10.65 18.08 -57.54 -1.04 -11.69 16 5 O -0.95 -10.50 17.49 -57.54 -1.01 -11.51 16 6 N -1.11 -8.47 5.82 -11.65 -0.07 -8.54 16 7 C 0.09 0.61 6.61 -5.19 -0.03 0.58 16 8 C 0.51 5.32 7.90 -10.98 -0.09 5.23 16 9 O -0.53 -7.55 15.73 5.56 0.09 -7.46 16 10 N -0.72 -7.07 5.17 -60.30 -0.31 -7.38 16 11 C 0.10 1.31 4.89 -4.05 -0.02 1.29 16 12 C 0.10 1.58 0.95 -88.47 -0.08 1.50 16 13 O -0.54 -8.40 13.19 -35.23 -0.46 -8.86 16 14 C -0.13 -2.29 6.16 -24.90 -0.15 -2.44 16 15 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 16 N -0.60 -14.72 3.39 -170.07 -0.58 -15.30 16 17 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 21 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.12 2.17 5.93 -2.53 -0.01 2.16 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.43 3.68 7.67 -34.47 -0.26 3.41 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.11 0.65 7.69 -51.93 -0.40 0.25 16 34 H 0.40 2.94 7.30 -40.82 -0.30 2.65 16 35 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.36 4.00 8.16 45.56 0.37 4.37 16 38 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 41 H 0.04 1.17 7.50 -51.93 -0.39 0.79 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 44 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -38.95 374.90 -8.77 -47.71 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.96 Total: 3.86 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.04 Total: 3.52 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.38 Total: -57.40 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.42 Total: -39.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 20.02 SS G_CDS: -0.59 Total: 19.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.95 -8.77 -47.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484221187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.047 kcal (2) G-P(sol) polarization free energy of solvation -38.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds