Wall clock time and date at job start Tue Mar 31 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81406 * 109.47078 * 2 1 4 4 O 1.42097 * 110.54242 * 68.37978 * 3 2 1 5 5 O 1.42100 * 110.54304 * 291.62695 * 3 2 1 6 6 N 1.65596 * 104.44797 * 180.02562 * 3 2 1 7 7 C 1.46505 * 119.99941 * 65.00238 * 6 3 2 8 8 C 1.50703 * 109.47064 * 164.99860 * 7 6 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 O 1.42908 * 110.88441 * 297.57083 * 12 11 10 14 14 C 1.55154 * 111.00407 * 173.65055 * 12 11 10 15 15 C 1.54328 * 102.94320 * 206.42236 * 14 12 11 16 16 N 1.47021 * 107.26926 * 22.19131 * 15 14 12 17 17 C 1.36936 * 125.64956 * 181.09726 * 16 15 14 18 18 H 1.08001 * 120.00106 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99908 * 359.95628 * 17 16 15 20 20 N 1.31617 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46923 * 90.00036 * 21 19 17 23 23 H 1.48494 * 109.47163 * 210.00021 * 21 19 17 24 24 H 1.48504 * 109.46896 * 330.00440 * 21 19 17 25 25 C 1.47424 * 108.70554 * 1.05829 * 16 15 14 26 26 H 1.09004 * 109.46523 * 299.99464 * 1 2 3 27 27 H 1.08996 * 109.47442 * 59.99434 * 1 2 3 28 28 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46523 * 240.00536 * 2 1 3 30 30 H 1.08991 * 109.47592 * 120.00092 * 2 1 3 31 31 H 0.96997 * 120.00145 * 244.99357 * 6 3 2 32 32 H 1.09002 * 109.47068 * 284.99828 * 7 6 3 33 33 H 1.09001 * 109.47372 * 44.99916 * 7 6 3 34 34 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 36 36 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 37 37 H 0.96696 * 113.99665 * 59.30287 * 13 12 11 38 38 H 1.08996 * 110.71983 * 324.78063 * 14 12 11 39 39 H 1.09000 * 110.72277 * 88.06040 * 14 12 11 40 40 H 1.09003 * 109.88087 * 262.77561 * 15 14 12 41 41 H 1.08995 * 110.01365 * 141.67594 * 15 14 12 42 42 H 0.97000 * 119.99998 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.37275 * 217.03387 * 25 16 15 44 44 H 1.09001 * 110.45743 * 94.75448 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9392 1.2790 -1.0794 9 8 6.3758 1.9364 -0.1585 10 7 6.7710 0.8281 -2.0392 11 6 8.2027 1.1306 -1.9693 12 6 8.9152 0.5062 -3.1707 13 8 8.7927 -0.9175 -3.1521 14 6 10.4051 0.9364 -3.2189 15 6 10.7471 0.8301 -4.7200 16 7 9.4813 0.9141 -5.4631 17 6 9.3481 0.8386 -6.8239 18 1 8.3698 0.9111 -7.2756 19 6 10.4706 0.6691 -7.6227 20 7 11.6628 0.5805 -7.0722 21 14 10.2889 0.5653 -9.4790 22 1 10.3853 1.9274 -10.0628 23 1 11.3688 -0.2890 -10.0351 24 1 8.9682 -0.0249 -9.8149 25 6 8.3789 1.0922 -4.5006 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2988 1.8765 0.7604 32 1 4.3227 -0.1131 -1.1373 33 1 4.0528 1.3772 -2.0724 34 1 6.4217 0.3026 -2.7760 35 1 8.3468 2.2110 -1.9823 36 1 8.6162 0.7199 -1.0482 37 1 7.8791 -1.2339 -3.1713 38 1 10.5219 1.9618 -2.8685 39 1 11.0224 0.2549 -2.6336 40 1 11.2334 -0.1241 -4.9228 41 1 11.4034 1.6499 -5.0120 42 1 12.4472 0.4625 -7.6305 43 1 7.4964 0.5431 -4.8286 44 1 8.1442 2.1500 -4.3816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484221187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:55 Heat of formation + Delta-G solvation = -162.960883 kcal Electronic energy + Delta-G solvation = -27176.579700 eV Core-core repulsion = 23062.670309 eV Total energy + Delta-G solvation = -4113.909391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13055 -39.89763 -38.19490 -37.04494 -36.79109 -35.75358 -35.30121 -33.99637 -33.98222 -31.46826 -30.11754 -28.23894 -27.02471 -25.01641 -24.90453 -22.39513 -21.52149 -21.35088 -20.36084 -19.37770 -18.82575 -18.47737 -17.60737 -17.44268 -17.07752 -16.71213 -16.68561 -16.62862 -15.87179 -15.84008 -15.49277 -15.17972 -15.06582 -14.50872 -14.42583 -14.17999 -13.98100 -13.86021 -13.48855 -13.34273 -13.22983 -13.21364 -13.13897 -13.08956 -12.89780 -12.76810 -12.34913 -12.33151 -12.06128 -12.02030 -11.78292 -11.72375 -11.57418 -11.09703 -10.87538 -10.67267 -10.50783 -10.16797 -8.87328 -7.83595 -5.18838 -0.74784 1.47118 1.49046 1.53794 1.57437 1.62923 2.14519 2.50294 2.85036 3.21132 3.24770 3.35768 3.47177 3.54856 3.68532 3.76964 3.95358 3.97403 4.00251 4.28503 4.35678 4.43800 4.51643 4.56780 4.62548 4.71004 4.77431 4.85274 4.90727 4.95776 4.99053 5.11039 5.16863 5.29424 5.46145 5.65104 5.78036 5.93183 6.20545 6.44486 6.88948 7.10729 7.13639 7.78642 8.42266 9.27109 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002259 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.540245 B =12391.889248 C =13224.515731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.603 4.603 3 S 2.615 3.385 4 O -0.999 6.999 5 O -0.995 6.995 6 N -1.115 6.115 7 C 0.089 3.911 8 C 0.511 3.489 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.119 3.881 12 C 0.124 3.876 13 O -0.552 6.552 14 C -0.122 4.122 15 C 0.189 3.811 16 N -0.622 5.622 17 C -0.239 4.239 18 H 0.087 0.913 19 C -0.070 4.070 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.265 1.265 25 C 0.110 3.890 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.423 0.577 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.417 0.583 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.245 0.755 43 H 0.060 0.940 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.256 -5.840 15.723 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.737 4.737 3 S 2.711 3.289 4 O -0.989 6.989 5 O -0.985 6.985 6 N -0.876 5.876 7 C -0.040 4.040 8 C 0.297 3.703 9 O -0.454 6.454 10 N -0.366 5.366 11 C -0.006 4.006 12 C 0.082 3.918 13 O -0.359 6.359 14 C -0.161 4.161 15 C 0.064 3.936 16 N -0.348 5.348 17 C -0.368 4.368 18 H 0.105 0.895 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.015 4.015 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.184 0.816 30 H 0.177 0.823 31 H 0.260 0.740 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.735 -4.586 16.039 26.612 hybrid contribution 0.353 -0.504 -1.214 1.362 sum -20.381 -5.091 14.825 25.712 Atomic orbital electron populations 1.21708 0.90424 1.06535 1.03593 1.30284 1.07177 1.21467 1.14754 1.04790 0.72381 0.79035 0.72659 1.93560 1.83335 1.75473 1.46552 1.93564 1.83628 1.74561 1.46705 1.55311 1.25776 1.78651 1.27852 1.21444 0.88775 1.02689 0.91065 1.20947 0.89431 0.78531 0.81343 1.90708 1.78367 1.40637 1.35671 1.45765 1.07620 1.55851 1.27403 1.21728 0.80236 1.00707 0.97940 1.22356 0.95914 0.81192 0.92387 1.86629 1.32857 1.19625 1.96761 1.22785 0.94251 1.01863 0.97161 1.20833 0.87761 0.97484 0.87567 1.44639 1.02749 1.85554 1.01819 1.19472 0.93743 1.41837 0.81719 0.89503 1.25683 0.95248 1.02737 1.02630 1.70197 0.97860 1.57633 1.34542 0.85075 0.77275 0.77155 0.79790 1.21523 1.22431 1.18933 1.22390 0.91739 0.98038 0.89330 0.91252 0.90888 0.87722 0.81621 0.82309 0.74035 0.83300 0.85752 0.74593 0.90869 0.90176 0.76584 0.88965 0.89944 0.97427 0.97540 0.94551 0.92137 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.92 71.98 0.71 -0.11 16 2 C -0.60 -2.08 6.79 71.98 0.49 -1.59 16 3 S 2.61 36.36 5.46 -56.49 -0.31 36.06 16 4 O -1.00 -22.42 18.08 -127.65 -2.31 -24.73 16 5 O -0.99 -21.15 17.49 -127.65 -2.23 -23.38 16 6 N -1.11 -14.84 5.82 -190.77 -1.11 -15.95 16 7 C 0.09 0.85 6.61 85.63 0.57 1.42 16 8 C 0.51 9.19 7.90 87.66 0.69 9.88 16 9 O -0.57 -15.50 15.73 -3.02 -0.05 -15.55 16 10 N -0.71 -11.58 5.17 -463.07 -2.39 -13.97 16 11 C 0.12 2.71 4.89 86.38 0.42 3.13 16 12 C 0.12 3.61 0.95 -9.40 -0.01 3.60 16 13 O -0.55 -15.84 13.19 -148.98 -1.97 -17.81 16 14 C -0.12 -4.30 6.16 31.78 0.20 -4.11 16 15 C 0.19 9.28 5.38 86.73 0.47 9.75 16 16 N -0.62 -30.64 3.39 -691.99 -2.35 -32.99 16 17 C -0.24 -12.99 10.28 84.03 0.86 -12.13 16 18 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 20 N -0.95 -57.64 10.31 21.65 0.22 -57.42 16 21 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 C 0.11 3.90 5.93 86.86 0.51 4.42 16 26 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.16 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.42 6.91 7.67 -96.75 -0.74 6.16 16 32 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.12 0.97 7.69 -2.39 -0.02 0.95 16 34 H 0.42 4.32 7.30 -92.70 -0.68 3.64 16 35 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.38 7.03 8.16 -74.06 -0.60 6.42 16 38 H 0.09 2.89 8.01 -2.39 -0.02 2.87 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.01 0.42 7.38 -2.39 -0.02 0.41 16 41 H 0.01 0.36 7.50 -2.39 -0.02 0.34 16 42 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.06 1.87 7.97 -2.39 -0.02 1.85 16 44 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 Total: -1.00 -89.61 374.90 -6.06 -95.68 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.98 Total: 12.04 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.38 Total: 10.76 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.63 Total: -120.33 kcal Atomic # 8 Polarization: -74.91 SS G_CDS: -6.55 Total: -81.47 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 36.36 SS G_CDS: -0.31 Total: 36.06 kcal Total: -89.61 -6.06 -95.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484221187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.284 kcal (2) G-P(sol) polarization free energy of solvation -89.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds