Wall clock time and date at job start Tue Mar 31 2020 18:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81409 * 109.46905 * 2 1 4 4 O 1.42105 * 110.54089 * 68.37324 * 3 2 1 5 5 O 1.42093 * 110.54113 * 291.62503 * 3 2 1 6 6 N 1.65601 * 104.44908 * 180.02562 * 3 2 1 7 7 C 1.46491 * 120.00205 * 64.99967 * 6 3 2 8 8 C 1.50701 * 109.47012 * 164.99761 * 7 6 3 9 9 O 1.21271 * 120.00317 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99907 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00209 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47207 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.63969 * 61.85818 * 12 11 10 14 14 C 1.55158 * 110.72104 * 184.99812 * 12 11 10 15 15 C 1.54909 * 101.58224 * 153.86653 * 14 12 11 16 16 N 1.47425 * 104.83321 * 322.99030 * 15 14 12 17 17 C 1.36928 * 125.65178 * 204.09302 * 16 15 14 18 18 H 1.08000 * 120.00644 * 164.04893 * 17 16 15 19 19 C 1.38811 * 119.99971 * 344.04811 * 17 16 15 20 20 N 1.31626 * 120.00480 * 156.77308 * 19 17 16 21 21 Si 1.86804 * 119.99856 * 336.77247 * 19 17 16 22 22 H 1.48500 * 109.46884 * 90.00129 * 21 19 17 23 23 H 1.48499 * 109.47126 * 209.99914 * 21 19 17 24 24 H 1.48499 * 109.47207 * 330.00127 * 21 19 17 25 25 C 1.47028 * 108.69911 * 24.35721 * 16 15 14 26 26 H 1.09003 * 109.46198 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47063 * 299.99776 * 1 2 3 28 28 H 1.08997 * 109.47026 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.47503 * 240.00408 * 2 1 3 30 30 H 1.08997 * 109.47551 * 119.99824 * 2 1 3 31 31 H 0.96999 * 119.99556 * 244.99874 * 6 3 2 32 32 H 1.09007 * 109.46893 * 44.99899 * 7 6 3 33 33 H 1.08999 * 109.47311 * 285.00182 * 7 6 3 34 34 H 0.97001 * 120.00006 * 0.02562 * 10 8 7 35 35 H 1.08993 * 109.46764 * 59.99740 * 11 10 8 36 36 H 1.08998 * 109.46906 * 299.99761 * 11 10 8 37 37 H 0.96697 * 114.00452 * 303.13731 * 13 12 11 38 38 H 1.08999 * 111.00021 * 35.78987 * 14 12 11 39 39 H 1.09003 * 111.00184 * 271.94053 * 14 12 11 40 40 H 1.09003 * 110.36494 * 204.15312 * 15 14 12 41 41 H 1.08998 * 110.36416 * 81.82763 * 15 14 12 42 42 H 0.97000 * 119.99344 * 4.52731 * 20 19 17 43 43 H 1.09008 * 109.87992 * 118.13229 * 25 16 15 44 44 H 1.09003 * 109.88073 * 239.28906 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7104 0.0000 4 8 1.8384 2.3439 1.2370 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5655 -0.0007 7 6 4.4666 0.9674 -1.1509 8 6 5.9393 1.2793 -1.0792 9 8 6.3759 1.9359 -0.1579 10 7 6.7712 0.8275 -2.0385 11 6 8.2029 1.1301 -1.9686 12 6 8.9157 0.5046 -3.1692 13 8 8.4221 1.0562 -4.3915 14 6 10.4509 0.7000 -3.0592 15 6 10.9772 -0.4998 -3.8856 16 7 10.0460 -1.6025 -3.5852 17 6 10.3305 -2.9379 -3.6887 18 1 9.6904 -3.6650 -3.2112 19 6 11.4416 -3.3572 -4.4073 20 7 11.9859 -4.5285 -4.1538 21 14 12.1644 -2.2591 -5.7344 22 1 13.1949 -1.3727 -5.1363 23 1 12.7863 -3.1002 -6.7884 24 1 11.0868 -1.4314 -6.3333 25 6 8.7592 -1.0307 -3.1621 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.2988 1.8766 0.7605 32 1 4.0528 1.3774 -2.0722 33 1 4.3229 -0.1129 -1.1372 34 1 6.4220 0.3020 -2.7752 35 1 8.6162 0.7203 -1.0471 36 1 8.3470 2.2105 -1.9825 37 1 7.4671 0.9601 -4.5092 38 1 10.7798 0.6344 -2.0220 39 1 10.7573 1.6462 -3.5054 40 1 11.9883 -0.7613 -3.5732 41 1 10.9568 -0.2654 -4.9499 42 1 11.5726 -5.1265 -3.5115 43 1 7.9746 -1.3287 -3.8577 44 1 8.5148 -1.3720 -2.1562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484221188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:59 Heat of formation + Delta-G solvation = -127.518514 kcal Electronic energy + Delta-G solvation = -27256.447351 eV Core-core repulsion = 23144.074856 eV Total energy + Delta-G solvation = -4112.372495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32326 -38.89032 -37.53947 -36.39625 -35.61659 -35.15339 -34.45326 -33.69648 -32.40963 -30.24718 -29.03541 -27.54113 -25.56710 -24.60698 -23.18552 -21.32773 -20.68994 -20.10731 -19.84531 -18.70780 -17.82128 -17.52251 -16.88111 -16.85859 -16.35541 -16.10043 -15.91283 -15.30668 -15.07023 -14.62720 -14.57756 -14.24393 -13.89091 -13.82456 -13.58995 -13.44394 -13.11451 -13.05408 -12.90286 -12.54059 -12.49946 -12.43720 -12.28898 -12.11962 -11.98617 -11.36145 -11.21900 -11.15279 -11.14107 -10.86360 -10.38517 -10.12660 -10.00026 -9.87075 -9.61235 -9.39522 -9.26569 -8.58378 -7.14734 -6.38194 -3.30665 -0.25016 2.14327 2.23047 2.81454 3.31466 3.39977 3.51721 3.65835 3.68997 4.01476 4.14042 4.18976 4.26016 4.49998 4.55040 4.59858 4.65124 4.72781 4.87805 4.97929 5.00989 5.07979 5.10570 5.14100 5.38241 5.38891 5.53998 5.66109 5.78826 5.95526 6.04812 6.13003 6.26623 6.31118 6.50795 6.54702 6.70009 7.08111 7.63257 7.66363 7.80536 8.27095 8.95704 9.50458 10.17877 11.08943 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.002281 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.695499 B =12273.990414 C =12845.197551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.616 3.384 4 O -0.952 6.952 5 O -0.954 6.954 6 N -1.109 6.109 7 C 0.093 3.907 8 C 0.514 3.486 9 O -0.530 6.530 10 N -0.724 5.724 11 C 0.104 3.896 12 C 0.104 3.896 13 O -0.543 6.543 14 C -0.114 4.114 15 C 0.108 3.892 16 N -0.604 5.604 17 C -0.331 4.331 18 H 0.073 0.927 19 C -0.017 4.017 20 N -0.919 5.919 21 Si 1.064 2.936 22 H -0.293 1.293 23 H -0.299 1.299 24 H -0.284 1.284 25 C 0.114 3.886 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.428 0.572 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.368 0.632 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.263 0.737 43 H 0.030 0.970 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.778 10.574 6.616 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.707 3.293 4 O -0.942 6.942 5 O -0.943 6.943 6 N -0.872 5.872 7 C -0.037 4.037 8 C 0.298 3.702 9 O -0.406 6.406 10 N -0.377 5.377 11 C -0.020 4.020 12 C 0.062 3.938 13 O -0.348 6.348 14 C -0.153 4.153 15 C -0.016 4.016 16 N -0.331 5.331 17 C -0.458 4.458 18 H 0.091 0.909 19 C -0.218 4.218 20 N -0.560 5.560 21 Si 0.895 3.105 22 H -0.220 1.220 23 H -0.226 1.226 24 H -0.211 1.211 25 C -0.012 4.012 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.267 0.733 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.237 0.763 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.214 0.786 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.133 11.945 5.962 23.330 hybrid contribution -1.653 -1.338 1.083 2.386 sum -20.785 10.607 7.045 24.376 Atomic orbital electron populations 1.21512 0.90257 1.05287 1.03594 1.30519 1.07533 1.26241 1.11954 1.04953 0.72646 0.77268 0.74434 1.93628 1.82707 1.72888 1.45016 1.93612 1.83148 1.71990 1.45595 1.55403 1.25977 1.78024 1.27754 1.21117 0.91838 0.99725 0.91018 1.20307 0.88034 0.79571 0.82262 1.90720 1.77365 1.38802 1.33683 1.45896 1.08760 1.55727 1.27278 1.22101 0.78992 1.01328 0.99562 1.22548 0.95423 0.93207 0.82587 1.86632 1.26811 1.81928 1.39383 1.22743 0.90919 0.99959 1.01629 1.22033 0.95139 0.87189 0.97288 1.44707 1.06433 1.01962 1.80025 1.19995 1.14009 0.80300 1.31468 0.90902 1.25958 0.95503 0.99890 1.00439 1.70926 1.36737 1.11015 1.37280 0.83848 0.75506 0.74204 0.76918 1.22027 1.22637 1.21063 1.21979 0.90983 0.90068 0.98168 0.89823 0.90865 0.90804 0.84881 0.84657 0.73350 0.86907 0.88417 0.76315 0.89908 0.90260 0.78561 0.89664 0.90168 0.92027 0.94433 0.92707 0.95193 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.92 37.16 0.37 -0.24 16 2 C -0.63 -2.46 6.79 37.16 0.25 -2.20 16 3 S 2.62 19.39 5.46 -107.50 -0.59 18.81 16 4 O -0.95 -10.48 18.08 -57.54 -1.04 -11.52 16 5 O -0.95 -9.97 17.49 -57.54 -1.01 -10.98 16 6 N -1.11 -8.24 5.82 -11.66 -0.07 -8.31 16 7 C 0.09 0.59 6.61 -5.20 -0.03 0.55 16 8 C 0.51 5.12 7.90 -10.98 -0.09 5.03 16 9 O -0.53 -7.32 15.73 5.56 0.09 -7.23 16 10 N -0.72 -6.66 5.13 -60.30 -0.31 -6.97 16 11 C 0.10 1.24 4.74 -4.04 -0.02 1.22 16 12 C 0.10 1.50 0.93 -88.78 -0.08 1.41 16 13 O -0.54 -7.55 13.10 -35.23 -0.46 -8.01 16 14 C -0.11 -1.82 6.26 -24.58 -0.15 -1.98 16 15 C 0.11 2.29 4.70 -2.53 -0.01 2.28 16 16 N -0.60 -14.15 3.23 -170.06 -0.55 -14.70 16 17 C -0.33 -9.17 10.44 -15.06 -0.16 -9.33 16 18 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 19 C -0.02 -0.49 5.43 -17.43 -0.09 -0.58 16 20 N -0.92 -28.26 13.70 55.49 0.76 -27.50 16 21 Si 1.06 26.33 24.70 -169.99 -4.20 22.13 16 22 H -0.29 -6.84 6.70 56.52 0.38 -6.46 16 23 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -6.77 6.25 56.52 0.35 -6.41 16 25 C 0.11 2.05 6.04 -3.06 -0.02 2.03 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.43 3.62 7.67 -34.47 -0.26 3.36 16 32 H 0.11 0.54 7.69 -51.93 -0.40 0.14 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.40 2.67 7.38 -40.82 -0.30 2.37 16 35 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.37 3.50 8.05 45.56 0.37 3.86 16 38 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.38 6.52 -51.93 -0.34 1.04 16 41 H 0.04 0.84 5.46 -51.93 -0.28 0.55 16 42 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 43 H 0.03 0.52 8.07 -51.92 -0.42 0.10 16 44 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -39.87 368.99 -7.76 -47.63 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.91 Total: 2.89 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.04 Total: -1.81 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.17 Total: -57.48 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -2.42 Total: -37.74 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.20 Total: 22.13 kcal Atomic # 16 Polarization: 19.39 SS G_CDS: -0.59 Total: 18.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.87 -7.76 -47.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484221188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.885 kcal (2) G-P(sol) polarization free energy of solvation -39.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds