Wall clock time and date at job start Tue Mar 31 2020 18:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99630 * 2 1 4 4 S 1.65605 * 119.99977 * 180.02562 * 2 1 3 5 5 O 1.42105 * 104.27517 * 333.92656 * 4 2 1 6 6 O 1.42101 * 104.27310 * 206.07253 * 4 2 1 7 7 C 1.81403 * 104.44938 * 89.99800 * 4 2 1 8 8 C 1.50698 * 109.47072 * 179.97438 * 7 4 2 9 9 O 1.21290 * 119.99865 * 0.02562 * 8 7 4 10 10 N 1.34765 * 120.00137 * 179.72729 * 8 7 4 11 11 C 1.46498 * 120.00288 * 180.27906 * 10 8 7 12 12 C 1.52999 * 109.47533 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51553 * 60.09586 * 12 11 10 14 14 C 1.53296 * 109.51582 * 180.25442 * 12 11 10 15 15 N 1.47146 * 108.38505 * 172.22253 * 14 12 11 16 16 C 1.36943 * 120.98183 * 129.43764 * 15 14 12 17 17 H 1.07998 * 120.00034 * 206.24431 * 16 15 14 18 18 C 1.38808 * 119.99844 * 26.24834 * 16 15 14 19 19 N 1.31617 * 120.00193 * 16.91268 * 18 16 15 20 20 Si 1.86807 * 120.00060 * 196.90960 * 18 16 15 21 21 H 1.48502 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46890 * 119.99700 * 20 18 16 23 23 H 1.48494 * 109.46898 * 240.00244 * 20 18 16 24 24 C 1.47157 * 118.03919 * 309.46133 * 15 14 12 25 25 C 1.53292 * 108.37929 * 50.53452 * 24 15 14 26 26 O 1.42960 * 109.22861 * 307.69705 * 25 24 15 27 27 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47189 * 300.00064 * 1 2 3 29 29 H 1.09002 * 109.46945 * 60.00113 * 1 2 3 30 30 H 1.08994 * 109.47185 * 269.99685 * 3 2 1 31 31 H 1.08998 * 109.47547 * 30.00569 * 3 2 1 32 32 H 1.09001 * 109.46649 * 150.00269 * 3 2 1 33 33 H 1.08999 * 109.46568 * 60.00161 * 7 4 2 34 34 H 1.08997 * 109.47043 * 300.00038 * 7 4 2 35 35 H 0.97004 * 119.99998 * 0.27504 * 10 8 7 36 36 H 1.09009 * 109.46704 * 299.99568 * 11 10 8 37 37 H 1.08999 * 109.47452 * 59.99104 * 11 10 8 38 38 H 1.09005 * 109.67492 * 291.94109 * 14 12 11 39 39 H 1.08992 * 109.68426 * 52.49657 * 14 12 11 40 40 H 0.97005 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.67953 * 290.81549 * 24 15 14 42 42 H 1.08993 * 109.68079 * 170.26001 * 24 15 14 43 43 H 1.09011 * 109.51120 * 187.77790 * 25 24 15 44 44 H 1.09003 * 109.51401 * 67.62823 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6042 6 8 3.5395 -1.1194 0.6048 7 6 2.5193 -1.8254 -1.7575 8 6 3.2704 -3.1251 -1.8899 9 8 3.6184 -3.7284 -0.8969 10 7 3.5502 -3.6202 -3.1117 11 6 4.2751 -4.8868 -3.2405 12 6 4.4618 -5.2193 -4.7223 13 1 5.0324 -4.4255 -5.2045 14 6 5.2146 -6.5477 -4.8581 15 7 5.2164 -6.9371 -6.2771 16 6 6.3791 -7.2867 -6.9107 17 1 6.4708 -7.1602 -7.9793 18 6 7.4396 -7.8037 -6.1794 19 7 7.2369 -8.2684 -4.9648 20 14 9.1546 -7.8399 -6.9191 21 1 9.1158 -7.2636 -8.2872 22 1 10.0762 -7.0419 -6.0713 23 1 9.6346 -9.2434 -6.9872 24 6 3.9321 -6.9393 -6.9955 25 6 3.2418 -5.5919 -6.7554 26 8 3.1826 -5.3369 -5.3500 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.3791 1.5834 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1498 1.1384 0.5138 33 1 3.0866 -1.0278 -2.2371 34 1 1.5451 -1.9178 -2.2375 35 1 3.2716 -3.1379 -3.9059 36 1 5.2509 -4.7971 -2.7630 37 1 3.7063 -5.6817 -2.7582 38 1 6.2402 -6.4256 -4.5096 39 1 4.7146 -7.3152 -4.2675 40 1 7.9781 -8.6293 -4.4536 41 1 3.3029 -7.7463 -6.6199 42 1 4.1084 -7.0767 -8.0622 43 1 2.2310 -5.6230 -7.1626 44 1 3.8083 -4.8001 -7.2457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495880625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:19 Heat of formation + Delta-G solvation = -114.156798 kcal Electronic energy + Delta-G solvation = -27477.963463 eV Core-core repulsion = 23366.170376 eV Total energy + Delta-G solvation = -4111.793088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.91816 -38.54056 -37.37197 -36.62314 -36.03038 -35.03433 -34.42199 -31.79331 -31.28522 -30.14245 -28.51957 -27.37672 -25.46291 -25.02150 -23.36397 -21.90359 -20.98140 -19.74984 -19.15328 -18.20223 -17.46116 -16.90805 -16.77071 -16.74385 -16.13913 -15.64818 -15.43275 -15.17391 -14.79340 -14.64371 -14.40865 -14.17526 -13.86765 -13.39649 -13.27346 -13.23937 -13.04439 -13.00209 -12.80879 -12.74917 -12.27432 -12.21584 -11.87593 -11.84651 -11.66041 -11.34961 -11.16526 -10.91534 -10.79870 -10.53643 -10.36940 -10.30017 -10.07040 -9.73941 -9.54117 -9.19885 -9.10280 -8.61332 -6.82758 -5.90276 -3.34447 -0.14792 2.30694 2.33226 2.93758 3.30633 3.38467 3.40470 3.63355 3.84952 4.08835 4.23704 4.38543 4.45090 4.50516 4.81736 4.92136 4.94350 5.08915 5.12969 5.29586 5.36486 5.38007 5.44079 5.48660 5.50968 5.76864 5.84101 5.90731 6.01853 6.04611 6.10627 6.24864 6.37396 6.47842 6.70981 6.98924 7.27683 7.40419 7.65195 7.73628 7.93929 8.26760 9.04548 9.67476 10.24054 11.17903 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.002401 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.636627 B =11656.671865 C =12260.249701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.011 6.011 3 C 0.079 3.921 4 S 2.644 3.356 5 O -0.936 6.936 6 O -0.936 6.936 7 C -0.674 4.674 8 C 0.537 3.463 9 O -0.539 6.539 10 N -0.703 5.703 11 C 0.126 3.874 12 C 0.054 3.946 13 H 0.058 0.942 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.258 4.258 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.289 1.289 24 C 0.108 3.892 25 C 0.050 3.950 26 O -0.392 6.392 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.407 0.593 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 20.266 4.444 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.850 5.850 3 C -0.066 4.066 4 S 2.731 3.269 5 O -0.926 6.926 6 O -0.926 6.926 7 C -0.802 4.802 8 C 0.320 3.680 9 O -0.418 6.418 10 N -0.353 5.353 11 C 0.003 3.997 12 C -0.005 4.005 13 H 0.075 0.925 14 C 0.025 3.975 15 N -0.318 5.318 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.311 6.311 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.241 0.759 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.326 19.275 6.048 24.201 hybrid contribution 0.806 0.363 -1.848 2.049 sum -12.520 19.638 4.200 23.665 Atomic orbital electron populations 1.21619 0.78168 1.04093 1.02414 1.57535 1.15515 1.22086 1.89895 1.21634 0.97749 0.85102 1.02107 1.04330 0.73964 0.72601 0.75983 1.93589 1.64823 1.62147 1.72028 1.93577 1.44164 1.82815 1.72067 1.31158 1.10875 1.05778 1.32353 1.19106 0.79597 0.84632 0.84628 1.90872 1.53845 1.60554 1.36509 1.45837 1.57380 1.24677 1.07366 1.21612 0.97506 0.84476 0.96097 1.23175 0.85709 1.01153 0.90490 0.92452 1.21314 1.00493 0.89659 0.86011 1.44055 1.02237 1.77953 1.07567 1.19217 0.90167 1.36544 0.92782 0.91270 1.25074 0.99453 0.97901 0.97166 1.70020 1.30657 1.42205 1.11574 0.86189 0.84382 0.77447 0.78544 1.20240 1.21379 1.21556 1.21605 0.88746 0.94369 0.97067 1.23017 1.00069 0.98153 0.81538 1.87769 1.28625 1.92836 1.21868 0.89412 0.91470 0.92057 0.92643 0.90442 0.89504 0.82417 0.82356 0.75871 0.89321 0.90052 0.88459 0.94897 0.93348 0.95482 0.91910 0.89957 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.62 59.85 0.64 1.08 16 2 N -1.01 -7.48 3.52 -129.20 -0.45 -7.94 16 3 C 0.08 0.43 10.68 59.84 0.64 1.07 16 4 S 2.64 30.34 4.55 -107.50 -0.49 29.85 16 5 O -0.94 -13.90 16.57 -57.55 -0.95 -14.85 16 6 O -0.94 -13.85 16.57 -57.55 -0.95 -14.81 16 7 C -0.67 -5.92 6.66 36.00 0.24 -5.68 16 8 C 0.54 7.61 7.85 -10.99 -0.09 7.53 16 9 O -0.54 -10.01 15.87 5.55 0.09 -9.92 16 10 N -0.70 -9.48 5.45 -60.29 -0.33 -9.81 16 11 C 0.13 2.08 5.37 -4.04 -0.02 2.06 16 12 C 0.05 0.98 2.87 -26.58 -0.08 0.91 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.50 4.73 -3.54 -0.02 3.48 16 15 N -0.59 -14.49 3.05 -171.83 -0.52 -15.01 16 16 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 18 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.58 11.14 55.49 0.62 -24.97 16 20 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.19 6.74 -3.53 -0.02 2.16 16 25 C 0.05 0.83 6.98 37.31 0.26 1.09 16 26 O -0.39 -6.90 10.13 -35.23 -0.36 -7.26 16 27 H 0.09 0.53 6.87 -51.92 -0.36 0.17 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.09 0.57 6.91 -51.93 -0.36 0.21 16 33 H 0.16 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.16 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.41 4.38 8.35 -40.82 -0.34 4.04 16 36 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 43 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -36.93 373.05 -8.27 -45.20 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.83 Total: 1.07 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 1.32 Total: 6.70 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.69 Total: -57.72 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.18 Total: -46.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 30.34 SS G_CDS: -0.49 Total: 29.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.93 -8.27 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495880625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.957 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds