Wall clock time and date at job start Tue Mar 31 2020 18:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99630 * 2 1 4 4 S 1.65605 * 119.99977 * 180.02562 * 2 1 3 5 5 O 1.42105 * 104.27517 * 333.92656 * 4 2 1 6 6 O 1.42101 * 104.27310 * 206.07253 * 4 2 1 7 7 C 1.81403 * 104.44938 * 89.99800 * 4 2 1 8 8 C 1.50698 * 109.47072 * 179.97438 * 7 4 2 9 9 O 1.21290 * 119.99865 * 0.02562 * 8 7 4 10 10 N 1.34765 * 120.00137 * 179.72729 * 8 7 4 11 11 C 1.46498 * 120.00288 * 180.27906 * 10 8 7 12 12 C 1.52999 * 109.47533 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51553 * 60.09586 * 12 11 10 14 14 C 1.53296 * 109.51582 * 180.25442 * 12 11 10 15 15 N 1.47146 * 108.38505 * 172.22253 * 14 12 11 16 16 C 1.36943 * 120.98183 * 129.43764 * 15 14 12 17 17 H 1.07998 * 120.00034 * 206.24431 * 16 15 14 18 18 C 1.38808 * 119.99844 * 26.24834 * 16 15 14 19 19 N 1.31617 * 120.00193 * 16.91268 * 18 16 15 20 20 Si 1.86807 * 120.00060 * 196.90960 * 18 16 15 21 21 H 1.48502 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46890 * 119.99700 * 20 18 16 23 23 H 1.48494 * 109.46898 * 240.00244 * 20 18 16 24 24 C 1.47157 * 118.03919 * 309.46133 * 15 14 12 25 25 C 1.53292 * 108.37929 * 50.53452 * 24 15 14 26 26 O 1.42960 * 109.22861 * 307.69705 * 25 24 15 27 27 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47189 * 300.00064 * 1 2 3 29 29 H 1.09002 * 109.46945 * 60.00113 * 1 2 3 30 30 H 1.08994 * 109.47185 * 269.99685 * 3 2 1 31 31 H 1.08998 * 109.47547 * 30.00569 * 3 2 1 32 32 H 1.09001 * 109.46649 * 150.00269 * 3 2 1 33 33 H 1.08999 * 109.46568 * 60.00161 * 7 4 2 34 34 H 1.08997 * 109.47043 * 300.00038 * 7 4 2 35 35 H 0.97004 * 119.99998 * 0.27504 * 10 8 7 36 36 H 1.09009 * 109.46704 * 299.99568 * 11 10 8 37 37 H 1.08999 * 109.47452 * 59.99104 * 11 10 8 38 38 H 1.09005 * 109.67492 * 291.94109 * 14 12 11 39 39 H 1.08992 * 109.68426 * 52.49657 * 14 12 11 40 40 H 0.97005 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.67953 * 290.81549 * 24 15 14 42 42 H 1.08993 * 109.68079 * 170.26001 * 24 15 14 43 43 H 1.09011 * 109.51120 * 187.77790 * 25 24 15 44 44 H 1.09003 * 109.51401 * 67.62823 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6042 6 8 3.5395 -1.1194 0.6048 7 6 2.5193 -1.8254 -1.7575 8 6 3.2704 -3.1251 -1.8899 9 8 3.6184 -3.7284 -0.8969 10 7 3.5502 -3.6202 -3.1117 11 6 4.2751 -4.8868 -3.2405 12 6 4.4618 -5.2193 -4.7223 13 1 5.0324 -4.4255 -5.2045 14 6 5.2146 -6.5477 -4.8581 15 7 5.2164 -6.9371 -6.2771 16 6 6.3791 -7.2867 -6.9107 17 1 6.4708 -7.1602 -7.9793 18 6 7.4396 -7.8037 -6.1794 19 7 7.2369 -8.2684 -4.9648 20 14 9.1546 -7.8399 -6.9191 21 1 9.1158 -7.2636 -8.2872 22 1 10.0762 -7.0419 -6.0713 23 1 9.6346 -9.2434 -6.9872 24 6 3.9321 -6.9393 -6.9955 25 6 3.2418 -5.5919 -6.7554 26 8 3.1826 -5.3369 -5.3500 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.3791 1.5834 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1498 1.1384 0.5138 33 1 3.0866 -1.0278 -2.2371 34 1 1.5451 -1.9178 -2.2375 35 1 3.2716 -3.1379 -3.9059 36 1 5.2509 -4.7971 -2.7630 37 1 3.7063 -5.6817 -2.7582 38 1 6.2402 -6.4256 -4.5096 39 1 4.7146 -7.3152 -4.2675 40 1 7.9781 -8.6293 -4.4536 41 1 3.3029 -7.7463 -6.6199 42 1 4.1084 -7.0767 -8.0622 43 1 2.2310 -5.6230 -7.1626 44 1 3.8083 -4.8001 -7.2457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495880625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:19 Heat of formation + Delta-G solvation = -145.939264 kcal Electronic energy + Delta-G solvation = -27479.341655 eV Core-core repulsion = 23366.170376 eV Total energy + Delta-G solvation = -4113.171279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13544 -40.04107 -38.34201 -37.27192 -36.88003 -36.53948 -35.98836 -33.31205 -32.95125 -31.26569 -29.02930 -28.91202 -27.08254 -25.55743 -25.07849 -23.42390 -22.16581 -21.36672 -19.96992 -19.08094 -18.97159 -18.23958 -17.78840 -17.67192 -17.37419 -17.04391 -16.60953 -16.44423 -16.10444 -15.55637 -15.43044 -15.34842 -15.31414 -15.05681 -14.64957 -14.50695 -14.20296 -13.90277 -13.60803 -13.53889 -13.26234 -13.20291 -13.18241 -13.04138 -12.72594 -12.55104 -12.53074 -12.52229 -12.22785 -12.15229 -12.08028 -11.90934 -11.58694 -11.29787 -10.83307 -10.57875 -10.35493 -10.02290 -8.77880 -7.93300 -5.40935 -0.97475 1.23559 1.44676 1.46898 1.57155 1.57342 1.93999 2.45970 2.73454 2.81845 3.07817 3.20308 3.31512 3.47978 3.87051 3.89466 3.99099 4.03594 4.21534 4.24788 4.43206 4.49199 4.54303 4.56357 4.63373 4.65458 4.78533 4.82160 4.94522 5.00374 5.04160 5.05585 5.07250 5.16069 5.21463 5.50975 5.57619 5.58778 6.19797 6.23529 6.30186 6.90677 7.03470 7.72595 8.25759 9.12669 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.002401 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.636627 B =11656.671865 C =12260.249701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.002 6.002 3 C 0.070 3.930 4 S 2.640 3.360 5 O -0.983 6.983 6 O -0.982 6.982 7 C -0.653 4.653 8 C 0.528 3.472 9 O -0.592 6.592 10 N -0.689 5.689 11 C 0.134 3.866 12 C 0.077 3.923 13 H 0.071 0.929 14 C 0.157 3.843 15 N -0.614 5.614 16 C -0.264 4.264 17 H 0.076 0.924 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.262 1.262 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.100 3.900 25 C 0.058 3.942 26 O -0.389 6.389 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.204 0.796 34 H 0.202 0.798 35 H 0.424 0.576 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.067 0.933 39 H -0.001 1.001 40 H 0.251 0.749 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 23.380 1.984 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.844 5.844 3 C -0.075 4.075 4 S 2.731 3.269 5 O -0.973 6.973 6 O -0.972 6.972 7 C -0.782 4.782 8 C 0.313 3.687 9 O -0.474 6.474 10 N -0.341 5.341 11 C 0.009 3.991 12 C 0.017 3.983 13 H 0.089 0.911 14 C 0.030 3.970 15 N -0.339 5.339 16 C -0.394 4.394 17 H 0.093 0.907 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.186 1.186 22 H -0.216 1.216 23 H -0.222 1.222 24 C -0.025 4.025 25 C -0.020 4.020 26 O -0.308 6.308 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.221 0.779 34 H 0.219 0.781 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.921 22.436 3.568 27.180 hybrid contribution 1.192 -0.613 -1.158 1.771 sum -13.729 21.824 2.410 25.895 Atomic orbital electron populations 1.21875 0.76664 1.04121 1.04476 1.57193 1.16200 1.21113 1.89884 1.21893 0.97111 0.84324 1.04147 1.03938 0.72918 0.72950 0.77082 1.93529 1.65563 1.64113 1.74065 1.93520 1.46118 1.83515 1.74082 1.31007 1.13027 1.03728 1.30456 1.19927 0.79105 0.85941 0.83722 1.90865 1.55852 1.62472 1.38192 1.45612 1.56749 1.23479 1.08211 1.21278 0.97361 0.85723 0.94753 1.22749 0.85620 0.98321 0.91575 0.91109 1.21100 0.99154 0.91476 0.85260 1.44365 1.03339 1.78224 1.07973 1.19585 0.91134 1.35432 0.93204 0.90676 1.25860 1.02992 0.98235 0.97672 1.70187 1.31249 1.43771 1.13032 0.85170 0.79855 0.76856 0.78333 1.18630 1.21631 1.22155 1.21852 0.87047 0.96495 0.97142 1.23095 1.02092 0.95861 0.80925 1.87786 1.27762 1.92541 1.22755 0.90419 0.90755 0.88697 0.89645 0.88481 0.91337 0.77925 0.78065 0.73780 0.90130 0.91883 0.91445 0.98289 0.93967 0.96800 0.90871 0.85928 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.62 127.77 1.36 1.95 16 2 N -1.00 -12.52 3.52 -562.69 -1.98 -14.49 16 3 C 0.07 0.56 10.68 127.77 1.37 1.93 16 4 S 2.64 58.64 4.55 -56.49 -0.26 58.38 16 5 O -0.98 -29.79 16.57 -127.64 -2.12 -31.91 16 6 O -0.98 -29.69 16.57 -127.64 -2.12 -31.81 16 7 C -0.65 -9.27 6.66 71.24 0.47 -8.80 16 8 C 0.53 14.19 7.85 87.66 0.69 14.88 16 9 O -0.59 -22.47 15.87 -3.06 -0.05 -22.52 16 10 N -0.69 -17.19 5.45 -463.06 -2.52 -19.71 16 11 C 0.13 4.41 5.37 86.38 0.46 4.88 16 12 C 0.08 2.72 2.87 30.69 0.09 2.81 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.16 7.44 4.73 86.36 0.41 7.84 16 15 N -0.61 -30.05 3.05 -697.56 -2.13 -32.17 16 16 C -0.26 -14.05 9.65 84.03 0.81 -13.24 16 17 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 18 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 19 N -0.94 -55.17 11.14 21.65 0.24 -54.93 16 20 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 C 0.10 3.89 6.74 86.35 0.58 4.48 16 25 C 0.06 1.71 6.98 72.08 0.50 2.21 16 26 O -0.39 -12.73 10.13 -148.98 -1.51 -14.23 16 27 H 0.08 0.82 6.87 -2.38 -0.02 0.80 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 32 H 0.07 0.83 6.91 -2.39 -0.02 0.82 16 33 H 0.20 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.20 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.42 7.49 8.35 -92.71 -0.77 6.72 16 36 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 3.59 6.14 -2.38 -0.01 3.57 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 43 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -86.00 373.05 -3.01 -89.01 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.23 Total: 11.91 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.16 Total: 16.51 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -6.39 Total: -121.31 kcal Atomic # 8 Polarization: -94.68 SS G_CDS: -5.79 Total: -100.47 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 58.64 SS G_CDS: -0.26 Total: 58.38 kcal Total: -86.00 -3.01 -89.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495880625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.926 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds