Wall clock time and date at job start Tue Mar 31 2020 18:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00009 * 2 1 4 4 S 1.65601 * 120.00066 * 179.97438 * 2 1 3 5 5 O 1.42092 * 104.28070 * 333.93422 * 4 2 1 6 6 O 1.42104 * 104.27991 * 206.07213 * 4 2 1 7 7 C 1.81405 * 104.44527 * 90.00535 * 4 2 1 8 8 C 1.50699 * 109.46894 * 180.02562 * 7 4 2 9 9 O 1.21272 * 120.00419 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99917 * 179.97438 * 8 7 4 11 11 C 1.46494 * 120.00225 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47489 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51442 * 304.89990 * 12 11 10 14 14 C 1.53290 * 109.55782 * 184.77202 * 12 11 10 15 15 N 1.47168 * 108.41883 * 187.77044 * 14 12 11 16 16 C 1.36931 * 120.99613 * 230.53737 * 15 14 12 17 17 H 1.08004 * 120.00643 * 153.70942 * 16 15 14 18 18 C 1.38819 * 119.99852 * 333.70685 * 16 15 14 19 19 N 1.31620 * 119.99887 * 160.04054 * 18 16 15 20 20 Si 1.86797 * 119.99924 * 340.04132 * 18 16 15 21 21 H 1.48507 * 109.46829 * 91.86354 * 20 18 16 22 22 H 1.48495 * 109.47348 * 211.86272 * 20 18 16 23 23 H 1.48498 * 109.46993 * 331.86571 * 20 18 16 24 24 C 1.47158 * 118.02439 * 50.46655 * 15 14 12 25 25 C 1.53289 * 108.41823 * 309.53423 * 24 15 14 26 26 O 1.42963 * 109.51272 * 65.00003 * 12 11 10 27 27 H 1.09000 * 109.47622 * 270.00082 * 1 2 3 28 28 H 1.09001 * 109.47205 * 30.00776 * 1 2 3 29 29 H 1.08999 * 109.46828 * 150.00571 * 1 2 3 30 30 H 1.09000 * 109.47013 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46586 * 299.99350 * 3 2 1 32 32 H 1.09001 * 109.47225 * 59.99303 * 3 2 1 33 33 H 1.08996 * 109.47115 * 59.99826 * 7 4 2 34 34 H 1.08998 * 109.47220 * 299.99948 * 7 4 2 35 35 H 0.97008 * 119.99870 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.47297 * 60.00110 * 11 10 8 37 37 H 1.09005 * 109.47397 * 300.00019 * 11 10 8 38 38 H 1.09000 * 109.68272 * 307.47209 * 14 12 11 39 39 H 1.09004 * 109.68493 * 68.02511 * 14 12 11 40 40 H 0.97004 * 119.99465 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.68318 * 189.78891 * 24 15 14 42 42 H 1.09001 * 109.67757 * 69.27715 * 24 15 14 43 43 H 1.08997 * 109.51477 * 172.20563 * 25 24 15 44 44 H 1.09002 * 109.51483 * 292.35936 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3559 0.6061 6 8 3.5395 -1.1189 0.6058 7 6 2.5194 -1.8267 -1.7559 8 6 3.2694 -3.1272 -1.8873 9 8 3.6175 -3.7296 -0.8939 10 7 3.5535 -3.6208 -3.1088 11 6 4.2832 -4.8847 -3.2366 12 6 4.4729 -5.2166 -4.7180 13 1 3.5037 -5.2241 -5.2165 14 6 5.1298 -6.5948 -4.8551 15 7 5.4711 -6.8085 -6.2706 16 6 5.1004 -7.9557 -6.9199 17 1 4.9613 -7.9493 -7.9909 18 6 4.9034 -9.1271 -6.2015 19 7 4.1883 -10.1038 -6.7184 20 14 5.6533 -9.3173 -4.5012 21 1 4.6779 -8.8650 -3.4767 22 1 5.9921 -10.7438 -4.2663 23 1 6.8857 -8.4940 -4.4089 24 6 6.2213 -5.7520 -6.9681 25 6 5.5113 -4.4149 -6.7282 26 8 5.3139 -4.2320 -5.3240 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5137 30 1 3.2691 1.0695 0.0005 31 1 1.9342 1.8402 -0.8901 32 1 1.9340 1.8404 0.8899 33 1 3.0866 -1.0295 -2.2362 34 1 1.5452 -1.9195 -2.2360 35 1 3.2749 -3.1392 -3.9034 36 1 3.7161 -5.6819 -2.7559 37 1 5.2576 -4.7918 -2.7570 38 1 6.0358 -6.6315 -4.2501 39 1 4.4354 -7.3671 -4.5242 40 1 4.0504 -10.9221 -6.2162 41 1 6.2496 -5.9661 -8.0365 42 1 7.2374 -5.7037 -6.5764 43 1 6.1238 -3.6022 -7.1186 44 1 4.5457 -4.4194 -7.2339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495880627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:23 Heat of formation + Delta-G solvation = -107.794621 kcal Electronic energy + Delta-G solvation = -27594.664019 eV Core-core repulsion = 23483.146817 eV Total energy + Delta-G solvation = -4111.517203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.07439 -38.83704 -37.42734 -36.67109 -36.09728 -35.22316 -34.64532 -31.98109 -31.64504 -30.41370 -28.57976 -27.77109 -25.59879 -25.08412 -23.70218 -21.93294 -21.14846 -20.12426 -19.24292 -18.27774 -17.54834 -17.03853 -16.87015 -16.82062 -16.33082 -15.89164 -15.59951 -15.51925 -14.84168 -14.71808 -14.59112 -14.25414 -14.14823 -13.71166 -13.46867 -13.40850 -13.32676 -13.00574 -12.81687 -12.57149 -12.41148 -12.30038 -12.04161 -11.97754 -11.90825 -11.83099 -11.43759 -11.29729 -10.93687 -10.59507 -10.44490 -10.34640 -9.94501 -9.61958 -9.59251 -9.51770 -9.29164 -8.67090 -7.13098 -6.06571 -3.44903 -0.21619 2.18730 2.26608 2.80678 3.24338 3.43402 3.44674 3.57503 3.77714 3.90068 4.09155 4.33215 4.41631 4.43031 4.64664 4.72514 4.85539 4.90600 5.07198 5.11188 5.23139 5.28104 5.32270 5.33236 5.43579 5.48048 5.63983 5.70185 5.73570 5.87538 5.98611 5.99334 6.07120 6.20028 6.34171 6.40635 6.61600 7.12569 7.46022 7.75595 7.80090 8.18846 8.75782 9.57003 9.92299 11.08753 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002593 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.868793 B =10797.072724 C =11413.684620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.011 6.011 3 C 0.082 3.918 4 S 2.643 3.357 5 O -0.934 6.934 6 O -0.936 6.936 7 C -0.675 4.675 8 C 0.539 3.461 9 O -0.538 6.538 10 N -0.704 5.704 11 C 0.122 3.878 12 C 0.064 3.936 13 H 0.069 0.931 14 C 0.101 3.899 15 N -0.606 5.606 16 C -0.266 4.266 17 H 0.089 0.911 18 C 0.025 3.975 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.048 3.952 26 O -0.387 6.387 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.408 0.592 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 25.014 7.798 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.851 5.851 3 C -0.063 4.063 4 S 2.730 3.270 5 O -0.924 6.924 6 O -0.926 6.926 7 C -0.803 4.803 8 C 0.322 3.678 9 O -0.417 6.417 10 N -0.354 5.354 11 C -0.002 4.002 12 C 0.004 3.996 13 H 0.086 0.914 14 C -0.026 4.026 15 N -0.331 5.331 16 C -0.394 4.394 17 H 0.107 0.893 18 C -0.174 4.174 19 N -0.547 5.547 20 Si 0.710 3.290 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.014 4.014 25 C -0.030 4.030 26 O -0.306 6.306 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.243 0.757 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.450 24.052 9.292 26.579 hybrid contribution -0.010 0.008 -0.579 0.579 sum -6.460 24.060 8.713 26.392 Atomic orbital electron populations 1.21507 0.78020 1.03066 1.02857 1.57582 1.15534 1.22096 1.89842 1.21624 0.97238 0.84981 1.02481 1.04405 0.73995 0.72593 0.75986 1.93595 1.64763 1.62224 1.71856 1.93588 1.44199 1.82824 1.71974 1.31177 1.10849 1.05648 1.32589 1.19119 0.79512 0.84639 0.84494 1.90869 1.53829 1.60502 1.36469 1.45798 1.57144 1.24894 1.07563 1.21623 0.97620 0.85099 0.95855 1.22886 0.94419 0.90962 0.91284 0.91353 1.21941 0.98541 0.94397 0.87695 1.44344 1.63085 1.18486 1.07192 1.18898 1.41511 0.85091 0.93861 0.89346 1.25268 0.98650 0.95466 0.98046 1.69816 1.38720 1.07224 1.38915 0.87029 0.80641 0.76413 0.84933 1.21258 1.22755 1.19415 1.21638 0.93971 0.87981 0.97807 1.23069 0.99976 0.98637 0.81311 1.87808 1.69907 1.50263 1.22645 0.91942 0.90799 0.90872 0.89410 0.91976 0.91441 0.82257 0.82323 0.75728 0.89235 0.89913 0.94287 0.89783 0.92524 0.90895 0.94965 0.89410 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.24 59.84 0.61 1.07 16 2 N -1.01 -7.04 3.52 -129.21 -0.45 -7.49 16 3 C 0.08 0.41 10.62 59.85 0.64 1.04 16 4 S 2.64 28.94 4.50 -107.50 -0.48 28.45 16 5 O -0.93 -13.51 17.09 -57.55 -0.98 -14.49 16 6 O -0.94 -13.36 16.57 -57.55 -0.95 -14.31 16 7 C -0.68 -5.42 6.66 36.01 0.24 -5.18 16 8 C 0.54 7.17 7.85 -10.98 -0.09 7.08 16 9 O -0.54 -9.52 15.86 5.56 0.09 -9.44 16 10 N -0.70 -8.77 5.50 -60.30 -0.33 -9.10 16 11 C 0.12 1.86 5.35 -4.05 -0.02 1.83 16 12 C 0.06 1.08 2.81 -26.58 -0.07 1.01 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.10 2.13 3.67 -3.53 -0.01 2.11 16 15 N -0.61 -13.96 2.84 -171.82 -0.49 -14.45 16 16 C -0.27 -7.20 10.10 -15.06 -0.15 -7.35 16 17 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 18 C 0.03 0.72 5.26 -17.43 -0.09 0.62 16 19 N -0.90 -27.13 13.97 55.49 0.78 -26.35 16 20 Si 0.88 22.03 24.29 -169.99 -4.13 17.91 16 21 H -0.29 -6.82 6.58 56.52 0.37 -6.45 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 23 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 24 C 0.11 2.09 6.73 -3.53 -0.02 2.07 16 25 C 0.05 0.73 6.99 37.31 0.26 0.99 16 26 O -0.39 -6.28 10.33 -35.23 -0.36 -6.64 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 29 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 30 H 0.09 0.49 6.87 -51.93 -0.36 0.13 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.16 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.16 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.41 3.92 8.47 -40.82 -0.35 3.57 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.84 6.86 -51.93 -0.36 0.49 16 39 H 0.08 1.91 4.61 -51.93 -0.24 1.68 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -38.18 367.54 -7.30 -45.48 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.80 Total: -0.41 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 1.29 Total: 5.30 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.50 Total: -57.39 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -2.21 Total: -44.88 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.13 Total: 17.91 kcal Atomic # 16 Polarization: 28.94 SS G_CDS: -0.48 Total: 28.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.18 -7.30 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495880627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.312 kcal (2) G-P(sol) polarization free energy of solvation -38.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds