Wall clock time and date at job start Tue Mar 31 2020 18:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00009 * 2 1 4 4 S 1.65601 * 120.00066 * 179.97438 * 2 1 3 5 5 O 1.42092 * 104.28070 * 333.93422 * 4 2 1 6 6 O 1.42104 * 104.27991 * 206.07213 * 4 2 1 7 7 C 1.81405 * 104.44527 * 90.00535 * 4 2 1 8 8 C 1.50699 * 109.46894 * 180.02562 * 7 4 2 9 9 O 1.21272 * 120.00419 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99917 * 179.97438 * 8 7 4 11 11 C 1.46494 * 120.00225 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47489 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51442 * 304.89990 * 12 11 10 14 14 C 1.53290 * 109.55782 * 184.77202 * 12 11 10 15 15 N 1.47168 * 108.41883 * 187.77044 * 14 12 11 16 16 C 1.36931 * 120.99613 * 230.53737 * 15 14 12 17 17 H 1.08004 * 120.00643 * 153.70942 * 16 15 14 18 18 C 1.38819 * 119.99852 * 333.70685 * 16 15 14 19 19 N 1.31620 * 119.99887 * 160.04054 * 18 16 15 20 20 Si 1.86797 * 119.99924 * 340.04132 * 18 16 15 21 21 H 1.48507 * 109.46829 * 91.86354 * 20 18 16 22 22 H 1.48495 * 109.47348 * 211.86272 * 20 18 16 23 23 H 1.48498 * 109.46993 * 331.86571 * 20 18 16 24 24 C 1.47158 * 118.02439 * 50.46655 * 15 14 12 25 25 C 1.53289 * 108.41823 * 309.53423 * 24 15 14 26 26 O 1.42963 * 109.51272 * 65.00003 * 12 11 10 27 27 H 1.09000 * 109.47622 * 270.00082 * 1 2 3 28 28 H 1.09001 * 109.47205 * 30.00776 * 1 2 3 29 29 H 1.08999 * 109.46828 * 150.00571 * 1 2 3 30 30 H 1.09000 * 109.47013 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46586 * 299.99350 * 3 2 1 32 32 H 1.09001 * 109.47225 * 59.99303 * 3 2 1 33 33 H 1.08996 * 109.47115 * 59.99826 * 7 4 2 34 34 H 1.08998 * 109.47220 * 299.99948 * 7 4 2 35 35 H 0.97008 * 119.99870 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.47297 * 60.00110 * 11 10 8 37 37 H 1.09005 * 109.47397 * 300.00019 * 11 10 8 38 38 H 1.09000 * 109.68272 * 307.47209 * 14 12 11 39 39 H 1.09004 * 109.68493 * 68.02511 * 14 12 11 40 40 H 0.97004 * 119.99465 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.68318 * 189.78891 * 24 15 14 42 42 H 1.09001 * 109.67757 * 69.27715 * 24 15 14 43 43 H 1.08997 * 109.51477 * 172.20563 * 25 24 15 44 44 H 1.09002 * 109.51483 * 292.35936 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3559 0.6061 6 8 3.5395 -1.1189 0.6058 7 6 2.5194 -1.8267 -1.7559 8 6 3.2694 -3.1272 -1.8873 9 8 3.6175 -3.7296 -0.8939 10 7 3.5535 -3.6208 -3.1088 11 6 4.2832 -4.8847 -3.2366 12 6 4.4729 -5.2166 -4.7180 13 1 3.5037 -5.2241 -5.2165 14 6 5.1298 -6.5948 -4.8551 15 7 5.4711 -6.8085 -6.2706 16 6 5.1004 -7.9557 -6.9199 17 1 4.9613 -7.9493 -7.9909 18 6 4.9034 -9.1271 -6.2015 19 7 4.1883 -10.1038 -6.7184 20 14 5.6533 -9.3173 -4.5012 21 1 4.6779 -8.8650 -3.4767 22 1 5.9921 -10.7438 -4.2663 23 1 6.8857 -8.4940 -4.4089 24 6 6.2213 -5.7520 -6.9681 25 6 5.5113 -4.4149 -6.7282 26 8 5.3139 -4.2320 -5.3240 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5137 30 1 3.2691 1.0695 0.0005 31 1 1.9342 1.8402 -0.8901 32 1 1.9340 1.8404 0.8899 33 1 3.0866 -1.0295 -2.2362 34 1 1.5452 -1.9195 -2.2360 35 1 3.2749 -3.1392 -3.9034 36 1 3.7161 -5.6819 -2.7559 37 1 5.2576 -4.7918 -2.7570 38 1 6.0358 -6.6315 -4.2501 39 1 4.4354 -7.3671 -4.5242 40 1 4.0504 -10.9221 -6.2162 41 1 6.2496 -5.9661 -8.0365 42 1 7.2374 -5.7037 -6.5764 43 1 6.1238 -3.6022 -7.1186 44 1 4.5457 -4.4194 -7.2339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495880627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:22 Heat of formation + Delta-G solvation = -142.110922 kcal Electronic energy + Delta-G solvation = -27596.152086 eV Core-core repulsion = 23483.146817 eV Total energy + Delta-G solvation = -4113.005269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19933 -40.22087 -38.34724 -37.27107 -36.91372 -36.66829 -36.07567 -33.67257 -33.17213 -31.40502 -29.31946 -28.93782 -27.10727 -25.57156 -25.36038 -23.38279 -22.23904 -21.66148 -19.99833 -19.10187 -19.08173 -18.27541 -17.87034 -17.74805 -17.47644 -17.35649 -16.70090 -16.49797 -16.13977 -15.84532 -15.50836 -15.42630 -15.35977 -15.30596 -14.72773 -14.42956 -14.26988 -13.98162 -13.75146 -13.61499 -13.49793 -13.47317 -13.32384 -13.21998 -12.96780 -12.59705 -12.53647 -12.42948 -12.38612 -12.14979 -12.12341 -11.68678 -11.60558 -11.38176 -11.16836 -10.56286 -10.40165 -10.05300 -9.01899 -8.23881 -5.57137 -0.98931 1.20757 1.23594 1.37111 1.43392 1.55070 1.90247 2.33282 2.61661 2.80547 2.94005 3.06342 3.18464 3.28592 3.81092 3.84311 3.86922 3.90254 4.04809 4.20472 4.27999 4.39592 4.40795 4.50505 4.50935 4.60678 4.61768 4.64800 4.78513 4.84985 4.93842 4.98838 5.02410 5.06827 5.10342 5.15629 5.55460 5.74731 6.04863 6.14294 6.16168 6.77704 6.86623 7.49968 7.90588 8.95235 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002593 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.868793 B =10797.072724 C =11413.684620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.003 6.003 3 C 0.073 3.927 4 S 2.639 3.361 5 O -0.983 6.983 6 O -0.982 6.982 7 C -0.653 4.653 8 C 0.529 3.471 9 O -0.590 6.590 10 N -0.691 5.691 11 C 0.125 3.875 12 C 0.082 3.918 13 H 0.077 0.923 14 C 0.093 3.907 15 N -0.622 5.622 16 C -0.249 4.249 17 H 0.063 0.937 18 C -0.029 4.029 19 N -0.951 5.951 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.309 1.309 23 H -0.266 1.266 24 C 0.102 3.898 25 C 0.055 3.945 26 O -0.382 6.382 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.204 0.796 34 H 0.203 0.797 35 H 0.425 0.575 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.129 0.871 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 28.678 7.110 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.844 5.844 3 C -0.072 4.072 4 S 2.730 3.270 5 O -0.973 6.973 6 O -0.972 6.972 7 C -0.783 4.783 8 C 0.315 3.685 9 O -0.472 6.472 10 N -0.342 5.342 11 C 0.001 3.999 12 C 0.022 3.978 13 H 0.095 0.905 14 C -0.033 4.033 15 N -0.348 5.348 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.224 4.224 19 N -0.596 5.596 20 Si 0.763 3.237 21 H -0.198 1.198 22 H -0.238 1.238 23 H -0.191 1.191 24 C -0.022 4.022 25 C -0.022 4.022 26 O -0.301 6.301 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.221 0.779 34 H 0.220 0.780 35 H 0.263 0.737 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.147 0.853 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.996 27.801 8.623 29.937 hybrid contribution 0.175 -1.023 -0.499 1.152 sum -6.820 26.778 8.124 28.802 Atomic orbital electron populations 1.21774 0.76638 1.05007 1.03045 1.57243 1.16171 1.21184 1.89821 1.21882 0.96663 0.84174 1.04467 1.04010 0.72925 0.72861 0.77164 1.93534 1.65540 1.64192 1.74012 1.93529 1.46102 1.83501 1.74064 1.31014 1.13125 1.03794 1.30382 1.19893 0.79076 0.85852 0.83692 1.90862 1.55849 1.62349 1.38126 1.45604 1.56439 1.23910 1.08292 1.21375 0.97629 0.86460 0.94482 1.22558 0.94257 0.88568 0.92401 0.90511 1.21960 0.98251 0.96661 0.86424 1.44495 1.64047 1.18256 1.07989 1.18875 1.39351 0.86537 0.93035 0.91903 1.25809 0.99668 0.95566 1.01396 1.69926 1.41050 1.08004 1.40670 0.86138 0.80137 0.75567 0.81815 1.19793 1.23803 1.19083 1.21910 0.94127 0.88581 0.97599 1.23133 1.00615 0.97582 0.80846 1.87834 1.69659 1.49354 1.23261 0.92843 0.87472 0.90270 0.90305 0.88533 0.90964 0.77906 0.77968 0.73685 0.89936 0.90794 0.94729 0.91798 0.92782 0.90676 0.94692 0.85336 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.24 127.77 1.31 1.91 16 2 N -1.00 -11.53 3.52 -562.70 -1.98 -13.51 16 3 C 0.07 0.52 10.62 127.77 1.36 1.87 16 4 S 2.64 54.82 4.50 -56.49 -0.25 54.56 16 5 O -0.98 -28.62 17.09 -127.64 -2.18 -30.80 16 6 O -0.98 -28.15 16.57 -127.64 -2.11 -30.27 16 7 C -0.65 -8.03 6.66 71.24 0.47 -7.56 16 8 C 0.53 12.87 7.85 87.66 0.69 13.56 16 9 O -0.59 -20.74 15.86 -3.01 -0.05 -20.78 16 10 N -0.69 -15.11 5.50 -463.07 -2.55 -17.66 16 11 C 0.13 3.60 5.35 86.38 0.46 4.06 16 12 C 0.08 2.56 2.81 30.69 0.09 2.65 16 13 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.09 3.82 3.67 86.35 0.32 4.14 16 15 N -0.62 -28.06 2.84 -697.50 -1.98 -30.04 16 16 C -0.25 -13.60 10.10 84.04 0.85 -12.75 16 17 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 18 C -0.03 -1.66 5.26 84.86 0.45 -1.21 16 19 N -0.95 -58.56 13.97 21.65 0.30 -58.26 16 20 Si 0.93 46.31 24.29 68.60 1.67 47.97 16 21 H -0.27 -12.68 6.58 99.48 0.65 -12.03 16 22 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 23 H -0.27 -12.86 6.54 99.48 0.65 -12.21 16 24 C 0.10 3.60 6.73 86.35 0.58 4.18 16 25 C 0.06 1.47 6.99 72.08 0.50 1.97 16 26 O -0.38 -10.96 10.33 -148.98 -1.54 -12.50 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.11 0.10 8.07 -2.39 -0.02 0.08 16 29 H 0.08 0.50 7.79 -2.39 -0.02 0.48 16 30 H 0.08 0.73 6.87 -2.39 -0.02 0.71 16 31 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.20 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.20 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.42 6.25 8.47 -92.70 -0.79 5.47 16 36 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.03 1.46 6.86 -2.39 -0.02 1.44 16 39 H 0.06 2.88 4.61 -2.39 -0.01 2.87 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -87.74 367.54 -3.48 -91.22 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.12 Total: 7.24 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.07 Total: 12.82 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.20 Total: -119.47 kcal Atomic # 8 Polarization: -88.47 SS G_CDS: -5.88 Total: -94.35 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.67 Total: 47.97 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -0.25 Total: 54.56 kcal Total: -87.74 -3.48 -91.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495880627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.889 kcal (2) G-P(sol) polarization free energy of solvation -87.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds