Wall clock time and date at job start Tue Mar 31 2020 18:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47028 * 2 1 4 4 O 1.42096 * 110.54420 * 68.37529 * 3 2 1 5 5 O 1.42100 * 110.54520 * 291.62273 * 3 2 1 6 6 N 1.65607 * 104.44959 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99322 * 64.99916 * 6 3 2 8 8 C 1.50708 * 109.46883 * 165.00280 * 7 6 3 9 9 O 1.21287 * 119.99629 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00160 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99859 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46963 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.70302 * 299.94187 * 12 11 10 14 14 C 1.53299 * 109.67831 * 179.41024 * 12 11 10 15 15 O 1.42965 * 109.21757 * 187.97397 * 14 12 11 16 16 C 1.42951 * 114.16955 * 62.58035 * 15 14 12 17 17 C 1.53294 * 109.22549 * 297.41697 * 16 15 14 18 18 N 1.47152 * 109.68201 * 60.48015 * 12 11 10 19 19 C 1.36935 * 120.98419 * 350.53457 * 18 12 11 20 20 H 1.08005 * 119.99631 * 31.33337 * 19 18 12 21 21 C 1.38802 * 120.00026 * 211.32970 * 19 18 12 22 22 N 1.31620 * 120.00128 * 9.83330 * 21 19 18 23 23 Si 1.86799 * 120.00351 * 189.83038 * 21 19 18 24 24 H 1.48509 * 109.47133 * 60.00005 * 23 21 19 25 25 H 1.48501 * 109.47705 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47166 * 300.00407 * 23 21 19 27 27 H 1.08999 * 109.46827 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47295 * 300.00083 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00438 * 1 2 3 30 30 H 1.09004 * 109.46967 * 239.99585 * 2 1 3 31 31 H 1.09005 * 109.46878 * 120.00020 * 2 1 3 32 32 H 0.96988 * 120.00412 * 244.99953 * 6 3 2 33 33 H 1.08994 * 109.47598 * 45.00203 * 7 6 3 34 34 H 1.08999 * 109.47590 * 284.99492 * 7 6 3 35 35 H 0.97000 * 120.00068 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47186 * 59.99547 * 11 10 8 37 37 H 1.09004 * 109.47027 * 299.99214 * 11 10 8 38 38 H 1.08999 * 109.51108 * 68.05007 * 14 12 11 39 39 H 1.09001 * 109.55371 * 307.91917 * 14 12 11 40 40 H 1.09000 * 109.51424 * 177.49565 * 16 15 14 41 41 H 1.09000 * 109.51709 * 57.34197 * 16 15 14 42 42 H 1.09000 * 109.68474 * 292.58422 * 17 16 15 43 43 H 1.09000 * 109.68479 * 172.02372 * 17 16 15 44 44 H 0.97000 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4675 0.9668 -1.1488 8 6 5.9402 1.2785 -1.0761 9 8 6.3760 1.9362 -0.1549 10 7 6.7727 0.8273 -2.0352 11 6 8.2041 1.1308 -1.9647 12 6 8.9175 0.5068 -3.1659 13 1 8.7773 -0.5742 -3.1557 14 6 10.4139 0.8339 -3.1047 15 8 11.0384 0.4094 -4.3186 16 6 10.5571 1.0752 -5.4884 17 6 9.0680 0.7604 -5.6717 18 7 8.3706 1.0659 -4.4124 19 6 7.2494 1.8518 -4.4001 20 1 7.0385 2.4785 -3.5461 21 6 6.3840 1.8432 -5.4853 22 7 6.5303 0.9456 -6.4367 23 14 5.0114 3.1055 -5.5954 24 1 5.5949 4.4710 -5.6127 25 1 4.2332 2.8834 -6.8405 26 1 4.1145 2.9654 -4.4202 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2982 1.8766 0.7621 33 1 4.0545 1.3765 -2.0706 34 1 4.3237 -0.1135 -1.1349 35 1 6.4240 0.3016 -2.7720 36 1 8.6174 0.7212 -1.0431 37 1 8.3476 2.2112 -1.9786 38 1 10.8663 0.3129 -2.2609 39 1 10.5477 1.9088 -2.9831 40 1 11.1124 0.7278 -6.3596 41 1 10.6905 2.1511 -5.3760 42 1 8.9429 -0.2949 -5.9139 43 1 8.6595 1.3730 -6.4754 44 1 5.9253 0.9393 -7.1949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501784605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:14 Heat of formation + Delta-G solvation = -122.371704 kcal Electronic energy + Delta-G solvation = -28291.916678 eV Core-core repulsion = 24179.767366 eV Total energy + Delta-G solvation = -4112.149313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.55829 -38.42819 -37.18360 -36.04205 -35.57331 -34.59509 -33.66104 -33.42677 -31.68894 -30.52124 -27.74917 -27.06057 -24.86966 -24.32941 -23.50478 -21.79233 -20.22045 -19.71032 -19.42917 -18.15424 -17.28379 -16.65701 -16.47049 -15.99688 -15.88091 -15.78428 -15.34692 -15.04374 -14.64666 -14.52627 -14.18449 -14.10453 -13.86431 -13.55614 -13.26858 -13.02549 -12.84920 -12.77302 -12.62892 -12.19180 -12.10343 -12.04467 -11.87683 -11.85072 -11.60546 -11.04941 -10.89469 -10.83277 -10.80195 -10.47362 -10.28697 -10.10982 -9.80112 -9.70341 -9.53372 -9.03960 -8.74387 -8.40697 -6.78846 -5.96242 -3.47601 0.10248 2.55531 2.92502 3.31540 3.36785 3.42619 3.54960 3.71513 4.02691 4.30976 4.31681 4.48083 4.57532 4.82100 4.88605 5.08481 5.16172 5.21590 5.26134 5.38980 5.41783 5.50574 5.54977 5.62926 5.68023 5.79437 5.95752 6.00834 6.10659 6.16320 6.28416 6.46517 6.67368 6.89924 6.98289 7.02139 7.44162 7.64189 7.81652 8.01513 8.23445 8.59751 8.99793 9.60080 10.19102 11.09721 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.003580 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.847510 B = 7819.562594 C = 8949.570948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.613 3.387 4 O -0.957 6.957 5 O -0.950 6.950 6 N -1.106 6.106 7 C 0.092 3.908 8 C 0.508 3.492 9 O -0.555 6.555 10 N -0.689 5.689 11 C 0.136 3.864 12 C 0.125 3.875 13 H 0.042 0.958 14 C 0.055 3.945 15 O -0.392 6.392 16 C 0.034 3.966 17 C 0.144 3.856 18 N -0.592 5.592 19 C -0.261 4.261 20 H 0.073 0.927 21 C 0.013 3.987 22 N -0.899 5.899 23 Si 0.891 3.109 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.273 1.273 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.426 0.574 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.418 0.582 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.093 0.907 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 -5.701 9.337 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.704 3.296 4 O -0.948 6.948 5 O -0.939 6.939 6 N -0.869 5.869 7 C -0.038 4.038 8 C 0.292 3.708 9 O -0.435 6.435 10 N -0.340 5.340 11 C 0.011 3.989 12 C 0.018 3.982 13 H 0.060 0.940 14 C -0.024 4.024 15 O -0.311 6.311 16 C -0.044 4.044 17 C 0.019 3.981 18 N -0.318 5.318 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.187 4.187 22 N -0.542 5.542 23 Si 0.719 3.281 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.198 1.198 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.111 0.889 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.186 -4.674 9.637 11.900 hybrid contribution -0.692 -0.028 -0.393 0.797 sum -5.878 -4.702 9.244 11.921 Atomic orbital electron populations 1.21497 0.90479 1.05037 1.03522 1.30533 1.07319 1.26712 1.11837 1.04973 0.72900 0.77256 0.74426 1.93602 1.83038 1.72927 1.45194 1.93643 1.83193 1.71753 1.45359 1.55308 1.25640 1.78026 1.27912 1.21124 0.92873 0.99099 0.90669 1.20164 0.87853 0.80205 0.82572 1.90643 1.77490 1.40350 1.34992 1.45952 1.08113 1.54108 1.25873 1.21202 0.79928 1.00925 0.96800 1.21430 0.92398 0.96508 0.87838 0.94028 1.22868 0.93595 0.98929 0.86977 1.87802 1.62835 1.65185 1.15275 1.23363 0.98396 0.95778 0.86848 1.21424 0.87068 0.99490 0.90165 1.44074 1.29361 1.58055 1.00262 1.19177 0.98322 1.17228 1.04321 0.90966 1.25145 0.97626 0.97475 0.98478 1.69959 1.38825 1.33948 1.11460 0.86557 0.82102 0.81596 0.77818 1.20877 1.21411 1.19809 0.90019 0.91008 0.90809 0.84798 0.84838 0.73575 0.86895 0.88984 0.74376 0.92118 0.91311 0.89927 0.93499 0.90230 0.94115 0.95244 0.88893 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.92 37.16 0.37 -0.68 16 2 C -0.63 -4.77 6.79 37.16 0.25 -4.52 16 3 S 2.61 31.16 5.46 -107.50 -0.59 30.58 16 4 O -0.96 -13.93 18.08 -57.54 -1.04 -14.97 16 5 O -0.95 -15.22 17.50 -57.54 -1.01 -16.23 16 6 N -1.11 -13.85 5.82 -11.66 -0.07 -13.91 16 7 C 0.09 1.21 6.61 -5.19 -0.03 1.17 16 8 C 0.51 8.37 7.90 -10.98 -0.09 8.28 16 9 O -0.56 -10.54 15.73 5.55 0.09 -10.46 16 10 N -0.69 -11.59 3.78 -60.29 -0.23 -11.82 16 11 C 0.14 2.31 4.45 -4.04 -0.02 2.30 16 12 C 0.13 2.29 3.21 -67.42 -0.22 2.07 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 C 0.06 0.93 6.29 37.31 0.23 1.17 16 15 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 16 C 0.03 0.63 6.98 37.31 0.26 0.89 16 17 C 0.14 3.15 5.38 -3.53 -0.02 3.13 16 18 N -0.59 -12.97 3.03 -164.29 -0.50 -13.47 16 19 C -0.26 -6.18 7.04 -15.06 -0.11 -6.29 16 20 H 0.07 1.74 5.82 -52.48 -0.31 1.44 16 21 C 0.01 0.32 5.08 -17.43 -0.09 0.23 16 22 N -0.90 -23.32 11.11 55.49 0.62 -22.70 16 23 Si 0.89 20.50 29.56 -169.99 -5.03 15.48 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.43 5.48 7.66 -34.48 -0.26 5.22 16 33 H 0.11 1.59 7.70 -51.93 -0.40 1.19 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.42 7.22 7.32 -40.82 -0.30 6.92 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.30 7.56 -51.93 -0.39 0.91 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 2.26 6.32 -51.93 -0.33 1.93 16 44 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -33.19 368.30 -8.65 -41.84 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.62 Total: 10.10 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 0.55 Total: 7.75 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.18 Total: -61.90 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.34 Total: -49.39 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 31.16 SS G_CDS: -0.59 Total: 30.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.19 -8.65 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501784605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.534 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds