Wall clock time and date at job start Tue Mar 31 2020 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47028 * 2 1 4 4 O 1.42096 * 110.54420 * 68.37529 * 3 2 1 5 5 O 1.42100 * 110.54520 * 291.62273 * 3 2 1 6 6 N 1.65607 * 104.44959 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99322 * 64.99916 * 6 3 2 8 8 C 1.50708 * 109.46883 * 165.00280 * 7 6 3 9 9 O 1.21287 * 119.99629 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00160 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99859 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46963 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.70302 * 299.94187 * 12 11 10 14 14 C 1.53299 * 109.67831 * 179.41024 * 12 11 10 15 15 O 1.42965 * 109.21757 * 187.97397 * 14 12 11 16 16 C 1.42951 * 114.16955 * 62.58035 * 15 14 12 17 17 C 1.53294 * 109.22549 * 297.41697 * 16 15 14 18 18 N 1.47152 * 109.68201 * 60.48015 * 12 11 10 19 19 C 1.36935 * 120.98419 * 350.53457 * 18 12 11 20 20 H 1.08005 * 119.99631 * 31.33337 * 19 18 12 21 21 C 1.38802 * 120.00026 * 211.32970 * 19 18 12 22 22 N 1.31620 * 120.00128 * 9.83330 * 21 19 18 23 23 Si 1.86799 * 120.00351 * 189.83038 * 21 19 18 24 24 H 1.48509 * 109.47133 * 60.00005 * 23 21 19 25 25 H 1.48501 * 109.47705 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47166 * 300.00407 * 23 21 19 27 27 H 1.08999 * 109.46827 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47295 * 300.00083 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00438 * 1 2 3 30 30 H 1.09004 * 109.46967 * 239.99585 * 2 1 3 31 31 H 1.09005 * 109.46878 * 120.00020 * 2 1 3 32 32 H 0.96988 * 120.00412 * 244.99953 * 6 3 2 33 33 H 1.08994 * 109.47598 * 45.00203 * 7 6 3 34 34 H 1.08999 * 109.47590 * 284.99492 * 7 6 3 35 35 H 0.97000 * 120.00068 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47186 * 59.99547 * 11 10 8 37 37 H 1.09004 * 109.47027 * 299.99214 * 11 10 8 38 38 H 1.08999 * 109.51108 * 68.05007 * 14 12 11 39 39 H 1.09001 * 109.55371 * 307.91917 * 14 12 11 40 40 H 1.09000 * 109.51424 * 177.49565 * 16 15 14 41 41 H 1.09000 * 109.51709 * 57.34197 * 16 15 14 42 42 H 1.09000 * 109.68474 * 292.58422 * 17 16 15 43 43 H 1.09000 * 109.68479 * 172.02372 * 17 16 15 44 44 H 0.97000 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4675 0.9668 -1.1488 8 6 5.9402 1.2785 -1.0761 9 8 6.3760 1.9362 -0.1549 10 7 6.7727 0.8273 -2.0352 11 6 8.2041 1.1308 -1.9647 12 6 8.9175 0.5068 -3.1659 13 1 8.7773 -0.5742 -3.1557 14 6 10.4139 0.8339 -3.1047 15 8 11.0384 0.4094 -4.3186 16 6 10.5571 1.0752 -5.4884 17 6 9.0680 0.7604 -5.6717 18 7 8.3706 1.0659 -4.4124 19 6 7.2494 1.8518 -4.4001 20 1 7.0385 2.4785 -3.5461 21 6 6.3840 1.8432 -5.4853 22 7 6.5303 0.9456 -6.4367 23 14 5.0114 3.1055 -5.5954 24 1 5.5949 4.4710 -5.6127 25 1 4.2332 2.8834 -6.8405 26 1 4.1145 2.9654 -4.4202 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2982 1.8766 0.7621 33 1 4.0545 1.3765 -2.0706 34 1 4.3237 -0.1135 -1.1349 35 1 6.4240 0.3016 -2.7720 36 1 8.6174 0.7212 -1.0431 37 1 8.3476 2.2112 -1.9786 38 1 10.8663 0.3129 -2.2609 39 1 10.5477 1.9088 -2.9831 40 1 11.1124 0.7278 -6.3596 41 1 10.6905 2.1511 -5.3760 42 1 8.9429 -0.2949 -5.9139 43 1 8.6595 1.3730 -6.4754 44 1 5.9253 0.9393 -7.1949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501784605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:13 Heat of formation + Delta-G solvation = -150.338004 kcal Electronic energy + Delta-G solvation = -28293.129388 eV Core-core repulsion = 24179.767366 eV Total energy + Delta-G solvation = -4113.362022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92403 -39.90573 -38.23362 -37.10193 -37.01690 -35.73634 -35.24816 -34.03018 -33.29717 -32.15324 -29.17022 -28.53675 -26.21874 -25.20599 -24.95238 -23.31727 -21.55397 -21.27853 -20.38656 -19.28374 -18.61474 -17.97362 -17.63362 -17.42413 -17.14782 -16.98226 -16.48321 -16.39347 -16.21497 -15.75973 -15.60969 -15.36751 -15.14531 -14.82163 -14.52777 -14.26596 -14.16704 -13.97567 -13.45846 -13.37523 -13.27699 -13.18369 -13.11924 -13.06751 -12.82418 -12.72547 -12.48179 -12.39034 -12.14766 -11.97502 -11.84094 -11.61595 -11.30237 -11.06906 -10.65806 -10.55609 -10.48980 -9.85977 -8.59449 -7.86430 -5.37266 -0.78552 1.43489 1.49068 1.53209 1.59333 1.65652 2.34438 2.46445 2.80278 3.05655 3.20771 3.30089 3.46483 3.62884 3.75088 3.92868 4.06347 4.21779 4.26842 4.31925 4.37868 4.40211 4.49457 4.56249 4.64327 4.67248 4.68950 4.73530 4.79457 4.85644 5.03216 5.12268 5.14670 5.33817 5.55394 5.66528 5.70789 5.94406 6.31705 6.39356 6.67710 7.12510 7.27410 7.78335 8.34352 9.17530 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.003580 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.847510 B = 7819.562594 C = 8949.570948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.601 4.601 3 S 2.609 3.391 4 O -0.992 6.992 5 O -1.001 7.001 6 N -1.110 6.110 7 C 0.091 3.909 8 C 0.505 3.495 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.141 3.859 12 C 0.127 3.873 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.397 6.397 16 C 0.045 3.955 17 C 0.149 3.851 18 N -0.606 5.606 19 C -0.242 4.242 20 H 0.068 0.932 21 C -0.022 4.022 22 N -0.922 5.922 23 Si 0.929 3.071 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.273 1.273 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.424 0.576 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.416 0.584 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.119 0.881 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.010 0.990 43 H 0.065 0.935 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 -7.646 10.609 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.736 4.736 3 S 2.706 3.294 4 O -0.983 6.983 5 O -0.991 6.991 6 N -0.871 5.871 7 C -0.039 4.039 8 C 0.291 3.709 9 O -0.465 6.465 10 N -0.342 5.342 11 C 0.017 3.983 12 C 0.021 3.979 13 H 0.062 0.938 14 C -0.023 4.023 15 O -0.316 6.316 16 C -0.033 4.033 17 C 0.023 3.977 18 N -0.332 5.332 19 C -0.372 4.372 20 H 0.086 0.914 21 C -0.219 4.219 22 N -0.567 5.567 23 Si 0.759 3.241 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.198 1.198 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.261 0.739 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.972 -6.570 10.921 13.681 hybrid contribution -0.746 0.524 -0.719 1.161 sum -5.718 -6.046 10.203 13.166 Atomic orbital electron populations 1.21710 0.89979 1.06718 1.03633 1.30270 1.07515 1.21080 1.14702 1.04945 0.72429 0.79353 0.72691 1.93549 1.83280 1.75420 1.46019 1.93576 1.83690 1.74838 1.47031 1.55231 1.25737 1.78606 1.27524 1.21275 0.90117 1.02108 0.90360 1.20714 0.89157 0.79294 0.81781 1.90628 1.78340 1.41462 1.36060 1.45966 1.08193 1.54136 1.25929 1.21142 0.80335 0.99593 0.97276 1.21562 0.93492 0.96371 0.86482 0.93804 1.23016 0.92421 0.99503 0.87381 1.87806 1.62826 1.65310 1.15652 1.23218 0.96151 0.95900 0.88002 1.21242 0.89228 0.97632 0.89568 1.44271 1.29124 1.58165 1.01615 1.19199 0.98170 1.16420 1.03453 0.91432 1.25465 0.99020 0.98548 0.98881 1.70049 1.39501 1.35265 1.11897 0.85956 0.80872 0.79952 0.77319 1.22001 1.21967 1.19835 0.87356 0.90760 0.91242 0.82296 0.81735 0.73901 0.88102 0.83859 0.74592 0.89664 0.93426 0.86340 0.93584 0.87873 0.94121 0.97186 0.91681 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.92 71.98 0.71 -1.11 16 2 C -0.60 -6.85 6.79 71.98 0.49 -6.36 16 3 S 2.61 60.17 5.46 -56.49 -0.31 59.86 16 4 O -0.99 -28.90 18.08 -127.65 -2.31 -31.20 16 5 O -1.00 -32.47 17.50 -127.65 -2.23 -34.70 16 6 N -1.11 -26.63 5.82 -190.79 -1.11 -27.74 16 7 C 0.09 2.22 6.61 85.64 0.57 2.78 16 8 C 0.51 16.04 7.90 87.66 0.69 16.73 16 9 O -0.58 -21.77 15.73 -3.05 -0.05 -21.81 16 10 N -0.69 -22.41 3.78 -463.04 -1.75 -24.16 16 11 C 0.14 4.59 4.45 86.38 0.38 4.97 16 12 C 0.13 4.43 3.21 44.97 0.14 4.57 16 13 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 14 C 0.06 1.71 6.29 72.08 0.45 2.17 16 15 O -0.40 -13.92 10.74 -148.98 -1.60 -15.52 16 16 C 0.05 1.61 6.98 72.08 0.50 2.12 16 17 C 0.15 6.49 5.38 86.35 0.46 6.96 16 18 N -0.61 -26.23 3.03 -673.71 -2.04 -28.27 16 19 C -0.24 -11.44 7.04 84.03 0.59 -10.85 16 20 H 0.07 3.26 5.82 -2.91 -0.02 3.24 16 21 C -0.02 -1.09 5.08 84.86 0.43 -0.66 16 22 N -0.92 -48.47 11.11 21.65 0.24 -48.23 16 23 Si 0.93 42.70 29.56 68.60 2.03 44.73 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.42 10.73 7.66 -96.75 -0.74 9.99 16 33 H 0.10 2.76 7.70 -2.39 -0.02 2.74 16 34 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 13.89 7.32 -92.71 -0.68 13.21 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 1.76 7.56 -2.38 -0.02 1.74 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 3.21 6.32 -2.39 -0.02 3.19 16 44 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -73.34 368.30 -4.09 -77.43 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.39 Total: 28.29 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 5.43 Total: 21.32 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.66 Total: -128.39 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -6.19 Total: -103.24 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 60.17 SS G_CDS: -0.31 Total: 59.86 kcal Total: -73.34 -4.09 -77.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501784605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.908 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds