Wall clock time and date at job start Tue Mar 31 2020 18:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00121 * 2 1 4 4 H 1.08003 * 120.00057 * 211.83287 * 3 2 1 5 5 C 1.38811 * 119.99851 * 31.83849 * 3 2 1 6 6 N 1.31613 * 120.00244 * 6.53128 * 5 3 2 7 7 Si 1.86802 * 119.99637 * 186.53499 * 5 3 2 8 8 H 1.48501 * 109.46844 * 89.99906 * 7 5 3 9 9 H 1.48504 * 109.46953 * 209.99565 * 7 5 3 10 10 H 1.48494 * 109.47330 * 329.99844 * 7 5 3 11 11 C 1.46508 * 119.99600 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47090 * 90.00079 * 11 2 1 13 13 C 1.53001 * 109.46564 * 179.97438 * 12 11 2 14 14 N 1.46504 * 109.46757 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99691 * 270.00362 * 14 13 12 16 16 C 1.34774 * 120.00111 * 89.99680 * 14 13 12 17 17 O 1.21681 * 119.99956 * 4.30404 * 16 14 13 18 18 C 1.46721 * 119.99897 * 184.30104 * 16 14 13 19 19 O 1.35343 * 126.64791 * 351.56144 * 18 16 14 20 20 C 1.33661 * 107.68615 * 179.97438 * 19 18 16 21 21 N 1.30608 * 109.15556 * 359.97438 * 20 19 18 22 22 C 1.33688 * 108.99936 * 0.02562 * 21 20 19 23 23 C 1.50699 * 126.27943 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.47386 * 270.02180 * 23 22 21 25 25 F 1.39907 * 109.46855 * 30.02340 * 23 22 21 26 26 F 1.39900 * 109.47243 * 150.02194 * 23 22 21 27 27 H 1.09004 * 109.47261 * 265.23511 * 1 2 3 28 28 H 1.09000 * 109.47159 * 25.23275 * 1 2 3 29 29 H 1.09003 * 109.47628 * 145.22817 * 1 2 3 30 30 H 0.96994 * 120.00382 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46888 * 329.99791 * 11 2 1 32 32 H 1.09004 * 109.46419 * 209.99340 * 11 2 1 33 33 H 1.09000 * 109.47332 * 59.99569 * 12 11 2 34 34 H 1.09001 * 109.46554 * 299.99655 * 12 11 2 35 35 H 1.08997 * 109.46979 * 59.99979 * 13 12 11 36 36 H 1.08996 * 109.47127 * 299.99218 * 13 12 11 37 37 H 1.09009 * 109.46787 * 263.88509 * 15 14 13 38 38 H 1.08993 * 109.47870 * 23.89023 * 15 14 13 39 39 H 1.09002 * 109.47152 * 143.89267 * 15 14 13 40 40 H 1.08004 * 125.42439 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1079 1.2562 -0.4933 5 6 1.6122 2.2976 0.6342 6 7 0.5098 2.1817 1.3436 7 14 2.4538 3.9582 0.4805 8 1 1.9137 4.6794 -0.6999 9 1 2.2009 4.7567 1.7068 10 1 3.9157 3.7587 0.3124 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2179 -3.0346 -1.4437 14 7 3.4615 -3.4573 -2.8252 15 6 2.4847 -4.3033 -3.5154 16 6 4.5841 -3.0677 -3.4610 17 8 5.4318 -2.4310 -2.8639 18 6 4.7842 -3.4114 -4.8733 19 8 4.0172 -4.2402 -5.6195 20 6 4.5400 -4.2801 -6.8490 21 7 5.5950 -3.5113 -6.8913 22 6 5.7782 -2.9571 -5.6886 23 6 6.8812 -2.0049 -5.3041 24 9 7.9797 -2.7304 -4.8308 25 9 7.2631 -1.2575 -6.4234 26 9 6.4246 -1.1429 -4.3013 27 1 -0.3634 -0.0854 1.0241 28 1 -0.3633 0.9296 -0.4381 29 1 -0.3634 -0.8441 -0.5861 30 1 0.1340 2.9585 1.7865 31 1 1.6083 -2.0286 0.5130 32 1 3.1499 -1.1386 0.5133 33 1 3.0415 -0.9500 -1.9568 34 1 1.4999 -1.8399 -1.9571 35 1 2.6291 -3.7946 -0.9301 36 1 4.1703 -2.9041 -0.9301 37 1 2.7878 -5.3474 -3.4357 38 1 1.5040 -4.1737 -3.0578 39 1 2.4357 -4.0185 -4.5664 40 1 4.1519 -4.8564 -7.6759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502357467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:46 Heat of formation + Delta-G solvation = -119.867733 kcal Electronic energy + Delta-G solvation = -29758.717720 eV Core-core repulsion = 24969.376296 eV Total energy + Delta-G solvation = -4789.341424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.18158 -47.73954 -47.61292 -44.21965 -39.98965 -36.65650 -35.91253 -35.27231 -32.59414 -31.60227 -30.21617 -27.45734 -27.16821 -25.91173 -25.49026 -24.04255 -22.88269 -21.99612 -20.52069 -20.19776 -18.92062 -18.67640 -18.33186 -17.71486 -17.49629 -16.75611 -16.50407 -16.25424 -15.45997 -15.02280 -14.83635 -14.57125 -14.41184 -14.30706 -14.07773 -13.97157 -13.80801 -13.74931 -13.40234 -13.28681 -12.97690 -12.76977 -12.69254 -12.41698 -12.19666 -11.79821 -11.50163 -11.29091 -10.99103 -10.82442 -10.76936 -10.48034 -10.41365 -10.18660 -9.90729 -9.90195 -9.71696 -8.91558 -8.46669 -6.58136 -5.72262 -3.24782 0.05196 1.62221 1.65197 2.26816 2.54287 2.71367 3.24154 3.41357 3.47484 3.50710 3.55872 3.83123 4.21911 4.34509 4.50096 4.53163 4.72742 4.83629 5.06155 5.19291 5.21955 5.37676 5.46062 5.53054 5.70300 5.89689 6.00997 6.05257 6.41805 6.45327 6.67659 6.78156 6.79503 6.99966 7.01245 7.36145 7.65455 7.68810 7.86673 8.50402 9.28986 9.89365 10.42744 11.34281 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003233 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.476499 B = 8658.704815 C = 9979.422990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.600 5.600 3 C -0.258 4.258 4 H 0.065 0.935 5 C 0.008 3.992 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.155 3.845 12 C -0.153 4.153 13 C 0.115 3.885 14 N -0.594 5.594 15 C 0.070 3.930 16 C 0.586 3.414 17 O -0.482 6.482 18 C -0.016 4.016 19 O -0.171 6.171 20 C 0.205 3.795 21 N -0.458 5.458 22 C -0.034 4.034 23 C 0.552 3.448 24 F -0.166 7.166 25 F -0.167 7.167 26 F -0.139 7.139 27 H 0.019 0.981 28 H 0.049 0.951 29 H -0.008 1.008 30 H 0.253 0.747 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -18.663 -16.313 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.082 0.918 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.202 1.202 11 C 0.027 3.973 12 C -0.194 4.194 13 C -0.006 4.006 14 N -0.326 5.326 15 C -0.072 4.072 16 C 0.370 3.630 17 O -0.356 6.356 18 C -0.075 4.075 19 O -0.057 6.057 20 C -0.021 4.021 21 N -0.184 5.184 22 C -0.159 4.159 23 C 0.497 3.503 24 F -0.148 7.148 25 F -0.148 7.148 26 F -0.120 7.120 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.244 -18.094 -16.354 25.176 hybrid contribution -0.098 0.814 0.137 0.831 sum 6.146 -17.280 -16.216 24.481 Atomic orbital electron populations 1.20730 0.83129 0.96840 0.97468 1.43783 1.01561 1.00699 1.86210 1.19165 1.03745 0.87622 1.28270 0.91758 1.25228 0.97894 0.99121 0.96824 1.70010 1.21638 1.28997 1.34473 0.86282 0.79467 0.83983 0.77019 1.21433 1.21618 1.20219 1.20628 0.96322 0.88585 0.91760 1.22655 0.99254 0.94967 1.02563 1.21813 1.02160 0.97559 0.79070 1.47848 1.19591 1.49762 1.15430 1.22070 0.93076 0.94192 0.97906 1.16487 0.83478 0.80974 0.82053 1.91044 1.42619 1.38371 1.63582 1.23318 0.93170 0.96435 0.94564 1.84835 1.46850 1.51638 1.22329 1.28546 0.89639 0.97487 0.86454 1.70174 1.17099 1.10008 1.21108 1.21716 0.98925 1.03747 0.91551 1.16715 0.79473 0.78779 0.75327 1.93239 1.55285 1.77644 1.88596 1.93234 1.91775 1.77484 1.52306 1.93413 1.88341 1.70178 1.60105 0.96253 0.93202 0.99002 0.93717 0.94725 0.93201 0.91647 0.92728 0.90036 0.89207 0.91962 0.89611 0.90533 0.71686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.00 59.84 0.54 4.57 16 2 N -0.60 -15.34 2.90 -181.11 -0.52 -15.86 16 3 C -0.26 -7.30 9.57 -15.06 -0.14 -7.45 16 4 H 0.06 1.82 7.84 -52.48 -0.41 1.41 16 5 C 0.01 0.23 5.15 -17.43 -0.09 0.14 16 6 N -0.91 -26.88 11.00 55.49 0.61 -26.27 16 7 Si 0.90 22.42 29.56 -169.99 -5.02 17.39 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.16 3.15 5.69 -4.04 -0.02 3.13 16 12 C -0.15 -2.61 5.86 -26.73 -0.16 -2.77 16 13 C 0.12 1.52 5.41 -4.04 -0.02 1.50 16 14 N -0.59 -7.15 2.87 -183.11 -0.53 -7.67 16 15 C 0.07 0.56 9.66 59.85 0.58 1.14 16 16 C 0.59 8.22 7.50 -12.84 -0.10 8.12 16 17 O -0.48 -8.35 12.97 5.21 0.07 -8.28 16 18 C -0.02 -0.19 6.75 -36.84 -0.25 -0.44 16 19 O -0.17 -1.35 7.52 4.43 0.03 -1.32 16 20 C 0.20 1.23 13.21 52.24 0.69 1.92 16 21 N -0.46 -4.80 11.21 -10.89 -0.12 -4.92 16 22 C -0.03 -0.44 6.49 -82.47 -0.54 -0.97 16 23 C 0.55 7.84 3.28 36.01 0.12 7.96 16 24 F -0.17 -2.35 17.30 2.25 0.04 -2.31 16 25 F -0.17 -2.31 17.27 2.25 0.04 -2.27 16 26 F -0.14 -2.29 13.71 2.25 0.03 -2.26 16 27 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 28 H 0.05 1.33 7.12 -51.93 -0.37 0.96 16 29 H -0.01 -0.18 8.11 -51.93 -0.42 -0.60 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.09 1.29 7.37 -51.93 -0.38 0.90 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 39 H 0.08 0.57 5.42 -51.93 -0.28 0.29 16 40 H 0.27 -0.05 8.06 -52.48 -0.42 -0.47 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -34.94 351.79 -4.23 -39.18 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -4.77 Total: -7.56 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 0.61 Total: 16.85 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.56 Total: -54.73 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.10 Total: -9.60 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.94 -4.23 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502357467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.689 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds