Wall clock time and date at job start Tue Mar 31 2020 18:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00121 * 2 1 4 4 H 1.08003 * 120.00057 * 211.83287 * 3 2 1 5 5 C 1.38811 * 119.99851 * 31.83849 * 3 2 1 6 6 N 1.31613 * 120.00244 * 6.53128 * 5 3 2 7 7 Si 1.86802 * 119.99637 * 186.53499 * 5 3 2 8 8 H 1.48501 * 109.46844 * 89.99906 * 7 5 3 9 9 H 1.48504 * 109.46953 * 209.99565 * 7 5 3 10 10 H 1.48494 * 109.47330 * 329.99844 * 7 5 3 11 11 C 1.46508 * 119.99600 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47090 * 90.00079 * 11 2 1 13 13 C 1.53001 * 109.46564 * 179.97438 * 12 11 2 14 14 N 1.46504 * 109.46757 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99691 * 270.00362 * 14 13 12 16 16 C 1.34774 * 120.00111 * 89.99680 * 14 13 12 17 17 O 1.21681 * 119.99956 * 4.30404 * 16 14 13 18 18 C 1.46721 * 119.99897 * 184.30104 * 16 14 13 19 19 O 1.35343 * 126.64791 * 351.56144 * 18 16 14 20 20 C 1.33661 * 107.68615 * 179.97438 * 19 18 16 21 21 N 1.30608 * 109.15556 * 359.97438 * 20 19 18 22 22 C 1.33688 * 108.99936 * 0.02562 * 21 20 19 23 23 C 1.50699 * 126.27943 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.47386 * 270.02180 * 23 22 21 25 25 F 1.39907 * 109.46855 * 30.02340 * 23 22 21 26 26 F 1.39900 * 109.47243 * 150.02194 * 23 22 21 27 27 H 1.09004 * 109.47261 * 265.23511 * 1 2 3 28 28 H 1.09000 * 109.47159 * 25.23275 * 1 2 3 29 29 H 1.09003 * 109.47628 * 145.22817 * 1 2 3 30 30 H 0.96994 * 120.00382 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46888 * 329.99791 * 11 2 1 32 32 H 1.09004 * 109.46419 * 209.99340 * 11 2 1 33 33 H 1.09000 * 109.47332 * 59.99569 * 12 11 2 34 34 H 1.09001 * 109.46554 * 299.99655 * 12 11 2 35 35 H 1.08997 * 109.46979 * 59.99979 * 13 12 11 36 36 H 1.08996 * 109.47127 * 299.99218 * 13 12 11 37 37 H 1.09009 * 109.46787 * 263.88509 * 15 14 13 38 38 H 1.08993 * 109.47870 * 23.89023 * 15 14 13 39 39 H 1.09002 * 109.47152 * 143.89267 * 15 14 13 40 40 H 1.08004 * 125.42439 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1079 1.2562 -0.4933 5 6 1.6122 2.2976 0.6342 6 7 0.5098 2.1817 1.3436 7 14 2.4538 3.9582 0.4805 8 1 1.9137 4.6794 -0.6999 9 1 2.2009 4.7567 1.7068 10 1 3.9157 3.7587 0.3124 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2179 -3.0346 -1.4437 14 7 3.4615 -3.4573 -2.8252 15 6 2.4847 -4.3033 -3.5154 16 6 4.5841 -3.0677 -3.4610 17 8 5.4318 -2.4310 -2.8639 18 6 4.7842 -3.4114 -4.8733 19 8 4.0172 -4.2402 -5.6195 20 6 4.5400 -4.2801 -6.8490 21 7 5.5950 -3.5113 -6.8913 22 6 5.7782 -2.9571 -5.6886 23 6 6.8812 -2.0049 -5.3041 24 9 7.9797 -2.7304 -4.8308 25 9 7.2631 -1.2575 -6.4234 26 9 6.4246 -1.1429 -4.3013 27 1 -0.3634 -0.0854 1.0241 28 1 -0.3633 0.9296 -0.4381 29 1 -0.3634 -0.8441 -0.5861 30 1 0.1340 2.9585 1.7865 31 1 1.6083 -2.0286 0.5130 32 1 3.1499 -1.1386 0.5133 33 1 3.0415 -0.9500 -1.9568 34 1 1.4999 -1.8399 -1.9571 35 1 2.6291 -3.7946 -0.9301 36 1 4.1703 -2.9041 -0.9301 37 1 2.7878 -5.3474 -3.4357 38 1 1.5040 -4.1737 -3.0578 39 1 2.4357 -4.0185 -4.5664 40 1 4.1519 -4.8564 -7.6759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502357467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:46 Heat of formation + Delta-G solvation = -145.382351 kcal Electronic energy + Delta-G solvation = -29759.824116 eV Core-core repulsion = 24969.376296 eV Total energy + Delta-G solvation = -4790.447821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.30306 -48.84477 -48.77955 -44.93047 -41.00698 -38.00566 -37.15635 -36.34510 -34.18377 -32.75608 -31.78091 -28.46102 -28.18450 -27.85036 -26.80431 -24.99399 -24.04609 -23.14992 -22.04083 -21.36908 -19.83173 -19.75323 -19.42231 -18.79554 -18.53384 -18.25829 -17.56845 -17.13525 -16.81442 -16.37397 -15.96296 -15.77874 -15.66021 -15.51425 -15.34028 -15.20594 -14.95547 -14.92198 -14.85435 -14.60909 -14.45265 -14.12360 -13.75020 -13.35892 -13.26153 -13.05516 -12.90031 -12.75913 -12.56913 -12.53231 -12.30417 -12.17129 -12.11038 -11.90710 -11.55742 -11.39027 -10.72252 -10.64896 -9.87183 -8.64103 -7.88156 -5.43124 -0.77521 0.83356 0.98155 1.33421 1.42875 1.43348 1.53318 1.58100 1.84837 2.31624 2.47843 2.62711 3.10201 3.12853 3.27263 3.50290 3.64658 3.70730 3.98184 4.06288 4.19015 4.34749 4.51670 4.59014 4.63922 4.72606 4.77370 4.89775 4.93350 5.00939 5.21453 5.25859 5.36365 5.53423 5.62609 5.66791 5.93781 6.10471 6.37357 6.67767 7.16240 7.86651 8.31959 9.15663 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003233 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.476499 B = 8658.704815 C = 9979.422990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.269 4.269 4 H 0.054 0.946 5 C -0.042 4.042 6 N -0.934 5.934 7 Si 0.963 3.037 8 H -0.284 1.284 9 H -0.287 1.287 10 H -0.274 1.274 11 C 0.152 3.848 12 C -0.132 4.132 13 C 0.124 3.876 14 N -0.591 5.591 15 C 0.064 3.936 16 C 0.579 3.421 17 O -0.530 6.530 18 C -0.027 4.027 19 O -0.157 6.157 20 C 0.249 3.751 21 N -0.495 5.495 22 C -0.045 4.045 23 C 0.545 3.455 24 F -0.171 7.171 25 F -0.168 7.168 26 F -0.158 7.158 27 H -0.001 1.001 28 H 0.020 0.980 29 H 0.032 0.968 30 H 0.251 0.749 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -21.209 -18.188 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.399 4.399 4 H 0.072 0.928 5 C -0.238 4.238 6 N -0.579 5.579 7 Si 0.790 3.210 8 H -0.210 1.210 9 H -0.214 1.214 10 H -0.199 1.199 11 C 0.026 3.974 12 C -0.174 4.174 13 C 0.002 3.998 14 N -0.322 5.322 15 C -0.077 4.077 16 C 0.364 3.636 17 O -0.408 6.408 18 C -0.087 4.087 19 O -0.042 6.042 20 C 0.024 3.976 21 N -0.221 5.221 22 C -0.169 4.169 23 C 0.490 3.510 24 F -0.152 7.152 25 F -0.150 7.150 26 F -0.139 7.139 27 H 0.017 0.983 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.345 0.655 Dipole moment (debyes) X Y Z Total from point charges 5.169 -20.690 -18.262 28.076 hybrid contribution 0.213 1.478 0.597 1.608 sum 5.382 -19.212 -17.665 26.648 Atomic orbital electron populations 1.20514 0.82860 0.96907 0.96596 1.44056 1.02101 1.01675 1.86597 1.19348 1.03526 0.89255 1.27781 0.92804 1.25905 0.98673 1.02251 0.96963 1.70143 1.22757 1.29609 1.35413 0.85348 0.78542 0.80123 0.76940 1.21014 1.21351 1.19917 1.20798 0.95511 0.87203 0.93927 1.22315 0.99501 0.95970 0.99569 1.21622 1.01329 0.96526 0.80308 1.47919 1.19740 1.49508 1.15026 1.22382 0.92607 0.94678 0.98053 1.16801 0.83486 0.80424 0.82913 1.91013 1.44303 1.40502 1.64970 1.22697 0.93968 0.98062 0.93941 1.84854 1.46017 1.50630 1.22747 1.29990 0.86950 0.94331 0.86327 1.70197 1.19613 1.12035 1.20270 1.21507 0.98582 1.03878 0.92902 1.16975 0.80119 0.79012 0.74869 1.93217 1.55678 1.77604 1.88693 1.93218 1.91896 1.77682 1.52170 1.93371 1.88560 1.70956 1.61023 0.98320 0.96150 0.94982 0.94008 0.91953 0.94657 0.95643 0.91791 0.86156 0.90884 0.89512 0.88234 0.89751 0.65548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 9.00 127.77 1.15 9.81 16 2 N -0.62 -31.91 2.90 -726.91 -2.10 -34.02 16 3 C -0.27 -15.51 9.57 84.03 0.80 -14.70 16 4 H 0.05 3.16 7.84 -2.91 -0.02 3.14 16 5 C -0.04 -2.43 5.15 84.86 0.44 -2.00 16 6 N -0.93 -56.26 11.00 21.65 0.24 -56.02 16 7 Si 0.96 46.90 29.56 68.60 2.03 48.93 16 8 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.15 6.09 5.69 86.38 0.49 6.58 16 12 C -0.13 -4.43 5.86 30.60 0.18 -4.25 16 13 C 0.12 3.07 5.41 86.38 0.47 3.54 16 14 N -0.59 -13.14 2.87 -851.46 -2.45 -15.59 16 15 C 0.06 0.77 9.66 127.77 1.23 2.01 16 16 C 0.58 16.08 7.50 86.46 0.65 16.73 16 17 O -0.53 -19.19 12.97 -4.29 -0.06 -19.25 16 18 C -0.03 -0.61 6.75 24.05 0.16 -0.45 16 19 O -0.16 -1.90 7.52 -7.05 -0.05 -1.95 16 20 C 0.25 1.89 13.21 130.42 1.72 3.61 16 21 N -0.50 -9.26 11.21 -303.14 -3.40 -12.66 16 22 C -0.04 -1.11 6.49 41.84 0.27 -0.83 16 23 C 0.55 16.04 3.28 71.24 0.23 16.28 16 24 F -0.17 -5.03 17.30 44.97 0.78 -4.25 16 25 F -0.17 -4.80 17.27 44.97 0.78 -4.03 16 26 F -0.16 -5.52 13.71 44.97 0.62 -4.90 16 27 H 0.00 -0.08 7.75 -2.38 -0.02 -0.10 16 28 H 0.02 1.08 7.12 -2.39 -0.02 1.06 16 29 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.03 1.50 8.04 -2.38 -0.02 1.48 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 36 H 0.07 2.09 7.37 -2.39 -0.02 2.07 16 37 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.08 0.91 5.42 -2.39 -0.01 0.90 16 40 H 0.33 -2.39 8.06 -2.91 -0.02 -2.41 16 Total: -1.00 -80.92 351.79 5.26 -75.65 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: 1.08 Total: -8.24 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 7.80 Total: 36.33 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -7.71 Total: -118.29 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.11 Total: -21.20 kcal Atomic # 9 Polarization: -15.35 SS G_CDS: 2.17 Total: -13.18 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -80.92 5.26 -75.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502357467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.729 kcal (2) G-P(sol) polarization free energy of solvation -80.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds