Wall clock time and date at job start Tue Mar 31 2020 19:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99735 * 2 1 4 4 C 1.38836 * 120.24834 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.98889 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.12341 * 359.97438 * 5 4 3 7 7 C 1.38386 * 119.73364 * 0.02562 * 6 5 4 8 8 C 1.36991 * 120.35322 * 0.02562 * 7 6 5 9 9 C 1.51455 * 120.17043 * 179.97438 * 8 7 6 10 10 C 1.53076 * 108.45152 * 70.72857 * 9 8 7 11 11 C 1.51595 * 110.92927 * 274.41425 * 10 9 8 12 12 C 1.51586 * 114.43011 * 68.11806 * 11 10 9 13 13 H 1.09000 * 109.18482 * 52.20432 * 12 11 10 14 14 N 1.46503 * 109.18481 * 171.50025 * 12 11 10 15 15 C 1.34781 * 119.99634 * 204.99819 * 14 12 11 16 16 O 1.21274 * 120.00344 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99423 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51465 * 119.50757 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47882 * 300.00277 * 1 2 3 30 30 H 1.09004 * 109.47591 * 60.00632 * 1 2 3 31 31 H 1.07997 * 120.00664 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93873 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.12945 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.64017 * 311.04064 * 9 8 7 35 35 H 1.09000 * 109.81456 * 190.51484 * 9 8 7 36 36 H 1.08995 * 109.18556 * 154.04249 * 10 9 8 37 37 H 1.08996 * 109.14871 * 34.75936 * 10 9 8 38 38 H 1.08997 * 108.49270 * 306.83175 * 11 10 9 39 39 H 1.09011 * 108.36585 * 189.30801 * 11 10 9 40 40 H 0.96994 * 119.99836 * 24.99939 * 14 12 11 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.63808 * 349.63754 * 27 7 6 45 45 H 1.09002 * 109.63923 * 229.01987 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2948 2.3785 -0.0005 5 6 1.9274 3.6064 -0.0011 6 6 3.3093 3.6756 -0.0005 7 6 4.0549 2.5098 0.0000 8 6 3.4320 1.2897 -0.0005 9 6 4.2520 0.0164 -0.0005 10 6 4.9168 -0.1318 1.3704 11 6 6.2261 0.6305 1.4226 12 6 6.0762 2.1381 1.3718 13 1 5.3683 2.4537 2.1382 14 7 7.3767 2.7602 1.6324 15 6 7.4376 4.0104 2.1322 16 8 6.4158 4.6205 2.3659 17 6 8.7754 4.6501 2.4008 18 16 8.5254 6.3155 3.0643 19 6 10.2017 6.8142 3.2788 20 1 11.0035 6.1397 3.0169 21 6 10.4917 8.0739 3.7844 22 7 9.5145 8.8958 4.1041 23 14 12.2689 8.6023 4.0126 24 1 12.3085 9.9811 4.5626 25 1 12.9445 7.6735 4.9539 26 1 12.9663 8.5725 2.7019 27 6 5.5673 2.5915 0.0000 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2161 2.3268 -0.0014 32 1 1.3422 4.5142 -0.0019 33 1 3.8040 4.6356 -0.0005 34 1 5.0174 0.0735 -0.7745 35 1 3.6045 -0.8402 -0.1881 36 1 5.1089 -1.1872 1.5631 37 1 4.2458 0.2559 2.1369 38 1 6.8431 0.3159 0.5810 39 1 6.7414 0.3652 2.3458 40 1 8.1939 2.2724 1.4451 41 1 9.3425 4.7101 1.4719 42 1 9.3264 4.0499 3.1249 43 1 9.7172 9.7759 4.4578 44 1 5.8787 3.6196 -0.1851 45 1 5.9695 1.9386 -0.7747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518497627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:27 Heat of formation + Delta-G solvation = -64.888436 kcal Electronic energy + Delta-G solvation = -26125.733076 eV Core-core repulsion = 22426.925688 eV Total energy + Delta-G solvation = -3698.807388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.82113 -39.44976 -38.13201 -36.41284 -34.10681 -32.41588 -31.99794 -31.32976 -29.59852 -28.05522 -27.63867 -25.79598 -25.47396 -23.85814 -22.05130 -20.72695 -20.49775 -19.98126 -17.92688 -17.79512 -16.76088 -16.25505 -16.15887 -15.92078 -15.83509 -15.14024 -14.79426 -14.58343 -14.26568 -14.15233 -13.95144 -13.57540 -13.45174 -13.32064 -13.01672 -12.60274 -12.57339 -12.42245 -12.20348 -11.99738 -11.72063 -11.54646 -11.24094 -11.09432 -11.03365 -11.02948 -10.85726 -10.78605 -10.68394 -10.60340 -9.80693 -9.34532 -9.08117 -9.03278 -8.60215 -8.22235 -8.20691 -6.48332 -6.20359 -3.90708 1.22852 1.36571 3.01626 3.07269 3.13314 3.24263 3.28317 3.32083 3.63723 3.74586 4.21832 4.47503 4.62825 4.64335 4.71171 4.81096 4.85271 4.87877 4.95189 5.12692 5.14596 5.17632 5.19959 5.23011 5.29743 5.34443 5.46121 5.49622 5.61891 5.65468 5.69894 5.73373 5.86332 5.91186 6.01238 6.02641 6.14617 6.15799 6.17820 6.28189 6.41919 6.63257 6.65403 6.73035 7.23261 7.60468 7.76549 8.36237 8.66308 9.24802 10.86959 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.002287 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.722732 B =12238.655580 C =13046.308217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.138 4.138 7 C -0.037 4.037 8 C -0.111 4.111 9 C -0.073 4.073 10 C -0.107 4.107 11 C -0.127 4.127 12 C 0.155 3.845 13 H 0.088 0.912 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.089 4.089 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.339 -20.952 -10.415 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.156 4.156 7 C -0.038 4.038 8 C -0.111 4.111 9 C -0.110 4.110 10 C -0.145 4.145 11 C -0.165 4.165 12 C 0.049 3.951 13 H 0.106 0.894 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.388 6.388 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.127 4.127 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.012 -19.938 -9.927 27.431 hybrid contribution 2.338 -0.290 -0.194 2.363 sum -13.675 -20.228 -10.121 26.431 Atomic orbital electron populations 1.23022 0.78694 1.03685 1.01303 1.86028 1.21019 1.26908 1.88965 1.18775 0.91708 0.84035 0.97644 1.21177 0.99721 0.92421 1.09727 1.20945 0.94650 0.96942 0.97692 1.21187 0.93666 0.98400 1.02368 1.19368 0.95512 0.91746 0.97176 1.18915 0.90248 0.95539 1.06442 1.20642 0.98181 0.94650 0.97504 1.21183 0.96009 0.99924 0.97362 1.21322 0.98542 0.93728 1.02872 1.20524 0.85872 0.91944 0.96721 0.89437 1.46145 1.08449 1.16540 1.67855 1.20305 0.91354 0.80705 0.75868 1.90704 1.36164 1.61882 1.50004 1.23542 0.96679 1.05326 1.04894 1.85386 1.11001 1.04901 1.82030 1.22830 0.92006 1.03434 1.50131 0.91003 1.24994 0.98448 0.95440 0.94720 1.70011 1.31606 1.07991 1.40695 0.86229 0.82919 0.77746 0.78636 1.20828 1.19946 1.19949 1.21275 0.90581 1.03234 0.97636 0.88416 0.92730 0.92824 0.85832 0.85835 0.85331 0.90854 0.90385 0.91191 0.91601 0.91595 0.91283 0.76933 0.89273 0.89303 0.92149 0.89890 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.82 101.05 0.99 1.17 16 2 O -0.32 -3.16 9.30 -19.43 -0.18 -3.34 16 3 C 0.12 1.39 6.67 -39.14 -0.26 1.13 16 4 C -0.21 -2.26 9.05 -39.40 -0.36 -2.61 16 5 C -0.08 -0.96 10.04 -39.57 -0.40 -1.36 16 6 C -0.14 -1.80 9.68 -39.48 -0.38 -2.18 16 7 C -0.04 -0.47 4.98 -104.64 -0.52 -0.99 16 8 C -0.11 -1.27 5.00 -104.48 -0.52 -1.80 16 9 C -0.07 -0.68 5.39 -27.47 -0.15 -0.82 16 10 C -0.11 -0.94 5.65 -27.40 -0.15 -1.10 16 11 C -0.13 -1.14 4.65 -28.16 -0.13 -1.28 16 12 C 0.15 1.89 2.23 -68.55 -0.15 1.74 16 13 H 0.09 1.33 7.29 -51.93 -0.38 0.96 16 14 N -0.74 -9.76 5.04 -54.41 -0.27 -10.03 16 15 C 0.53 9.81 7.63 -10.98 -0.08 9.73 16 16 O -0.51 -11.51 15.53 5.56 0.09 -11.43 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.09 -1.06 5.08 -27.42 -0.14 -1.20 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.31 7.67 -51.93 -0.40 -0.08 16 30 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 31 H 0.12 1.02 6.33 -52.49 -0.33 0.69 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.74 7.97 -52.49 -0.42 1.32 16 34 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 35 H 0.08 0.71 7.08 -51.93 -0.37 0.34 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 38 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.40 4.04 8.59 -40.82 -0.35 3.69 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 45 H 0.08 0.77 6.90 -51.93 -0.36 0.41 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -34.72 376.17 -9.69 -44.41 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.65 Total: 3.04 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.84 Total: -15.42 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.46 Total: -35.52 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.09 Total: -14.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.72 -9.69 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518497627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.474 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds