Wall clock time and date at job start Tue Mar 31 2020 19:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99735 * 2 1 4 4 C 1.38836 * 120.24834 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.98889 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.12341 * 359.97438 * 5 4 3 7 7 C 1.38386 * 119.73364 * 0.02562 * 6 5 4 8 8 C 1.36991 * 120.35322 * 0.02562 * 7 6 5 9 9 C 1.51455 * 120.17043 * 179.97438 * 8 7 6 10 10 C 1.53076 * 108.45152 * 70.72857 * 9 8 7 11 11 C 1.51595 * 110.92927 * 274.41425 * 10 9 8 12 12 C 1.51586 * 114.43011 * 68.11806 * 11 10 9 13 13 H 1.09000 * 109.18482 * 52.20432 * 12 11 10 14 14 N 1.46503 * 109.18481 * 171.50025 * 12 11 10 15 15 C 1.34781 * 119.99634 * 204.99819 * 14 12 11 16 16 O 1.21274 * 120.00344 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99423 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51465 * 119.50757 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47882 * 300.00277 * 1 2 3 30 30 H 1.09004 * 109.47591 * 60.00632 * 1 2 3 31 31 H 1.07997 * 120.00664 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93873 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.12945 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.64017 * 311.04064 * 9 8 7 35 35 H 1.09000 * 109.81456 * 190.51484 * 9 8 7 36 36 H 1.08995 * 109.18556 * 154.04249 * 10 9 8 37 37 H 1.08996 * 109.14871 * 34.75936 * 10 9 8 38 38 H 1.08997 * 108.49270 * 306.83175 * 11 10 9 39 39 H 1.09011 * 108.36585 * 189.30801 * 11 10 9 40 40 H 0.96994 * 119.99836 * 24.99939 * 14 12 11 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.63808 * 349.63754 * 27 7 6 45 45 H 1.09002 * 109.63923 * 229.01987 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2948 2.3785 -0.0005 5 6 1.9274 3.6064 -0.0011 6 6 3.3093 3.6756 -0.0005 7 6 4.0549 2.5098 0.0000 8 6 3.4320 1.2897 -0.0005 9 6 4.2520 0.0164 -0.0005 10 6 4.9168 -0.1318 1.3704 11 6 6.2261 0.6305 1.4226 12 6 6.0762 2.1381 1.3718 13 1 5.3683 2.4537 2.1382 14 7 7.3767 2.7602 1.6324 15 6 7.4376 4.0104 2.1322 16 8 6.4158 4.6205 2.3659 17 6 8.7754 4.6501 2.4008 18 16 8.5254 6.3155 3.0643 19 6 10.2017 6.8142 3.2788 20 1 11.0035 6.1397 3.0169 21 6 10.4917 8.0739 3.7844 22 7 9.5145 8.8958 4.1041 23 14 12.2689 8.6023 4.0126 24 1 12.3085 9.9811 4.5626 25 1 12.9445 7.6735 4.9539 26 1 12.9663 8.5725 2.7019 27 6 5.5673 2.5915 0.0000 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2161 2.3268 -0.0014 32 1 1.3422 4.5142 -0.0019 33 1 3.8040 4.6356 -0.0005 34 1 5.0174 0.0735 -0.7745 35 1 3.6045 -0.8402 -0.1881 36 1 5.1089 -1.1872 1.5631 37 1 4.2458 0.2559 2.1369 38 1 6.8431 0.3159 0.5810 39 1 6.7414 0.3652 2.3458 40 1 8.1939 2.2724 1.4451 41 1 9.3425 4.7101 1.4719 42 1 9.3264 4.0499 3.1249 43 1 9.7172 9.7759 4.4578 44 1 5.8787 3.6196 -0.1851 45 1 5.9695 1.9386 -0.7747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518497627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:25 Heat of formation + Delta-G solvation = -86.927083 kcal Electronic energy + Delta-G solvation = -26126.688744 eV Core-core repulsion = 22426.925688 eV Total energy + Delta-G solvation = -3699.763055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70444 -40.67541 -39.08964 -37.37247 -35.20053 -34.57770 -32.98179 -32.30324 -30.81741 -29.22133 -28.24756 -27.64531 -26.61251 -24.79230 -22.93545 -21.79673 -21.56303 -20.99254 -19.78528 -18.72872 -17.76861 -17.61900 -17.22593 -16.87381 -16.76454 -16.62384 -16.42176 -15.90180 -15.58074 -15.12395 -14.84610 -14.78037 -14.59397 -14.20758 -14.19262 -14.10706 -13.65405 -13.41800 -13.16410 -13.05831 -12.95429 -12.85692 -12.67915 -12.54366 -12.47915 -11.96438 -11.85170 -11.76084 -11.67620 -11.54681 -11.39266 -11.12440 -10.87812 -10.26965 -10.25458 -9.55331 -9.07022 -8.66004 -8.34007 -6.12044 0.34305 0.45666 1.27428 1.44129 1.47202 1.57050 1.64623 2.24727 2.29242 2.38107 2.75403 2.99868 3.32910 3.65735 3.77425 3.83118 3.90962 4.00651 4.07744 4.12482 4.26632 4.28414 4.32173 4.40686 4.40721 4.45047 4.49039 4.52429 4.63502 4.69437 4.75568 4.82163 4.84139 4.91837 5.09624 5.15761 5.25804 5.26709 5.36621 5.42000 5.45094 5.51147 5.55450 5.72332 5.81543 6.20102 6.46114 6.56039 7.07010 7.29574 8.74904 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.002287 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.722732 B =12238.655580 C =13046.308217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.118 3.882 4 C -0.214 4.214 5 C -0.092 4.092 6 C -0.167 4.167 7 C -0.050 4.050 8 C -0.119 4.119 9 C -0.069 4.069 10 C -0.102 4.102 11 C -0.120 4.120 12 C 0.158 3.842 13 H 0.052 0.948 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.562 6.562 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.279 1.279 25 H -0.262 1.262 26 H -0.262 1.262 27 C -0.083 4.083 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.055 0.945 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 -24.035 -11.339 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.110 4.110 6 C -0.186 4.186 7 C -0.050 4.050 8 C -0.120 4.120 9 C -0.106 4.106 10 C -0.140 4.140 11 C -0.158 4.158 12 C 0.053 3.947 13 H 0.070 0.930 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.439 6.439 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.205 1.205 25 H -0.186 1.186 26 H -0.186 1.186 27 C -0.121 4.121 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.828 -23.086 -10.876 29.514 hybrid contribution 1.821 0.542 0.048 1.900 sum -13.007 -22.544 -10.828 28.190 Atomic orbital electron populations 1.23325 0.76752 1.05550 1.01986 1.86016 1.23028 1.26089 1.88654 1.18957 0.91984 0.84760 0.97011 1.21451 1.01037 0.91845 1.08905 1.21146 0.94157 0.98176 0.97517 1.21227 0.94776 0.98090 1.04500 1.19440 0.95694 0.92088 0.97827 1.19178 0.90950 0.95988 1.05893 1.20694 0.98334 0.93460 0.98139 1.21165 0.95241 1.01137 0.96452 1.21287 0.99362 0.90606 1.04547 1.20600 0.84165 0.94212 0.95736 0.92998 1.45865 1.10125 1.14644 1.65648 1.20083 0.89986 0.81987 0.76050 1.90700 1.37350 1.63463 1.52428 1.23377 0.98157 1.00680 1.05782 1.85597 1.12498 1.11183 1.83291 1.23175 0.92036 1.04057 1.50117 0.89865 1.26150 1.03681 0.95387 0.94065 1.70185 1.34380 1.08482 1.41770 0.85000 0.76410 0.77386 0.79180 1.20463 1.18611 1.18614 1.21203 0.90673 1.02119 0.98091 0.86074 0.92264 0.91879 0.83407 0.84495 0.87330 0.89448 0.89877 0.88667 0.93658 0.88779 0.90480 0.74528 0.87175 0.87240 0.92032 0.92667 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 113.37 1.11 1.30 16 2 O -0.32 -5.90 9.30 -92.45 -0.86 -6.76 16 3 C 0.12 2.57 6.67 22.55 0.15 2.72 16 4 C -0.21 -4.45 9.05 22.39 0.20 -4.25 16 5 C -0.09 -2.19 10.04 22.27 0.22 -1.96 16 6 C -0.17 -4.71 9.68 22.34 0.22 -4.49 16 7 C -0.05 -1.28 4.98 -19.88 -0.10 -1.38 16 8 C -0.12 -2.66 5.00 -19.78 -0.10 -2.76 16 9 C -0.07 -1.12 5.39 30.11 0.16 -0.96 16 10 C -0.10 -1.55 5.65 30.16 0.17 -1.38 16 11 C -0.12 -1.83 4.65 29.67 0.14 -1.70 16 12 C 0.16 3.75 2.23 44.59 0.10 3.85 16 13 H 0.05 1.65 7.29 -2.39 -0.02 1.63 16 14 N -0.71 -17.93 5.04 -444.46 -2.24 -20.17 16 15 C 0.53 19.85 7.63 87.66 0.67 20.52 16 16 O -0.56 -26.48 15.53 -3.01 -0.05 -26.53 16 17 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.55 -31.34 9.50 67.96 0.65 -30.70 16 20 H 0.08 4.41 7.80 -2.92 -0.02 4.39 16 21 C 0.01 0.68 5.49 84.86 0.47 1.14 16 22 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 23 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 C -0.08 -1.98 5.08 30.15 0.15 -1.82 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.56 7.67 -2.39 -0.02 0.55 16 30 H 0.06 0.54 7.67 -2.38 -0.02 0.52 16 31 H 0.15 2.22 6.33 -2.91 -0.02 2.20 16 32 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.11 3.35 7.97 -2.91 -0.02 3.33 16 34 H 0.09 1.18 6.90 -2.39 -0.02 1.16 16 35 H 0.08 1.29 7.08 -2.39 -0.02 1.27 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.88 7.85 -2.39 -0.02 0.87 16 38 H 0.09 0.98 7.83 -2.39 -0.02 0.96 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.42 7.26 8.59 -92.71 -0.80 6.47 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 45 H 0.10 1.86 6.90 -2.39 -0.02 1.85 16 Total: -1.00 -79.73 376.17 2.87 -76.87 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.21 Total: 23.28 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 4.65 Total: -26.53 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.95 Total: -76.40 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.91 Total: -33.29 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -79.73 2.87 -76.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518497627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.060 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds