Wall clock time and date at job start Tue Mar 31 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.53001 * 109.47147 * 89.99619 * 4 3 2 6 6 N 1.46499 * 109.47147 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99869 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99537 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00511 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99587 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46807 * 90.00113 * 11 9 7 13 13 H 1.48495 * 109.47257 * 209.99902 * 11 9 7 14 14 H 1.48494 * 109.47278 * 330.00390 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 16 16 O 1.21613 * 119.99880 * 180.02562 * 15 3 2 17 17 C 1.47397 * 120.00384 * 0.02562 * 15 3 2 18 18 C 1.47107 * 128.56603 * 89.66752 * 17 15 3 19 19 C 1.50699 * 127.33405 * 0.02562 * 18 17 15 20 20 N 1.30009 * 105.32993 * 179.89666 * 18 17 15 21 21 O 1.20657 * 112.30345 * 0.40081 * 20 18 17 22 22 C 1.33490 * 113.15242 * 359.72982 * 21 20 18 23 23 C 1.50706 * 126.82733 * 180.02562 * 22 21 20 24 24 F 1.39909 * 109.46907 * 269.99917 * 23 22 21 25 25 F 1.39902 * 109.47178 * 29.99720 * 23 22 21 26 26 F 1.39902 * 109.47099 * 150.00113 * 23 22 21 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 31 31 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 32 32 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 33 33 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 34 34 H 1.09003 * 109.47272 * 300.00321 * 5 4 3 35 35 H 1.08997 * 109.47273 * 60.00010 * 5 4 3 36 36 H 0.96996 * 120.00177 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00749 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47263 * 89.99529 * 19 18 17 39 39 H 1.08999 * 109.47300 * 209.99917 * 19 18 17 40 40 H 1.09004 * 109.47258 * 330.00032 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7104 6 7 3.9515 2.5215 2.9795 7 6 5.1835 2.4483 3.5727 8 1 5.9754 1.8823 3.1049 9 6 5.4148 3.1027 4.7749 10 7 4.4499 3.7929 5.3448 11 14 7.0952 3.0024 5.5846 12 1 7.9460 4.1186 5.0992 13 1 6.9414 3.1020 7.0582 14 1 7.7342 1.7070 5.2400 15 6 2.2483 2.0147 -1.1672 16 8 2.6541 3.1611 -1.1671 17 6 2.0080 1.3181 -2.4437 18 6 0.7723 1.2630 -3.2399 19 6 -0.5480 1.9177 -2.9248 20 7 1.0625 0.5315 -4.2748 21 8 2.2031 0.1386 -4.2524 22 6 2.8807 0.5550 -3.1803 23 6 4.3179 0.2491 -2.8451 24 9 4.3796 -0.9216 -2.0814 25 9 5.0453 0.0737 -4.0271 26 9 4.8627 1.3111 -2.1154 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0955 3.1410 1.1384 33 1 1.5817 1.6877 2.0284 34 1 3.8745 0.7621 1.8407 35 1 4.3883 2.2155 0.9508 36 1 3.2402 3.0296 3.3998 37 1 4.6116 4.2505 6.1847 38 1 -0.5725 2.9155 -3.3629 39 1 -1.3587 1.3188 -3.3396 40 1 -0.6677 1.9924 -1.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568778407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:07 Heat of formation + Delta-G solvation = -97.961922 kcal Electronic energy + Delta-G solvation = -30499.539720 eV Core-core repulsion = 25711.148203 eV Total energy + Delta-G solvation = -4788.391517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.61580 -48.13475 -48.10512 -45.59820 -40.08337 -36.43193 -35.36571 -34.55922 -33.44803 -31.79679 -30.52146 -29.41263 -28.18011 -26.94420 -25.10282 -23.83299 -23.20760 -21.72201 -21.55791 -20.02679 -19.21917 -18.78027 -18.72306 -18.17111 -17.57505 -17.23486 -16.39757 -16.26695 -15.12991 -14.93310 -14.88770 -14.53052 -14.48201 -14.43576 -14.25325 -14.19854 -14.18729 -13.91348 -13.80434 -13.72259 -13.53511 -13.24308 -13.01940 -12.80482 -12.65867 -12.07416 -11.95643 -11.39233 -11.35681 -11.08628 -10.91397 -10.74557 -10.58427 -10.56186 -10.17536 -10.09381 -9.74779 -8.88176 -8.78586 -6.94910 -5.76826 -3.06274 0.28300 1.26205 1.29632 2.07089 2.50984 2.73338 3.10051 3.42577 3.45124 3.50345 3.51637 3.73902 3.77248 3.88013 4.26682 4.36010 4.60186 4.65632 4.85463 4.92726 4.99735 5.05289 5.15359 5.39651 5.41876 5.48380 5.57328 5.60853 5.69673 5.91717 5.95889 6.02555 6.39729 6.64646 6.81699 7.16807 7.42472 7.70630 7.85722 8.41345 9.52751 10.07399 10.42622 11.46028 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.003543 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.164925 B = 7901.004841 C = 8970.055062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 N -0.590 5.590 4 C 0.108 3.892 5 C 0.141 3.859 6 N -0.729 5.729 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.012 4.012 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.582 3.418 16 O -0.497 6.497 17 C -0.152 4.152 18 C 0.058 3.942 19 C -0.084 4.084 20 N -0.326 5.326 21 O 0.138 5.862 22 C -0.102 4.102 23 C 0.562 3.438 24 F -0.155 7.155 25 F -0.159 7.159 26 F -0.141 7.141 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 -10.382 -19.138 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 N -0.323 5.323 4 C -0.014 4.014 5 C 0.013 3.987 6 N -0.374 5.374 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.208 4.208 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.365 3.635 16 O -0.371 6.371 17 C -0.159 4.159 18 C -0.103 4.103 19 C -0.141 4.141 20 N -0.026 5.026 21 O 0.068 5.932 22 C -0.167 4.167 23 C 0.506 3.494 24 F -0.136 7.136 25 F -0.140 7.140 26 F -0.122 7.122 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.239 -10.206 -20.123 25.207 hybrid contribution 1.180 0.305 1.228 1.730 sum -10.059 -9.901 -18.895 23.584 Atomic orbital electron populations 1.22332 0.95387 1.02751 1.02932 1.21671 0.94859 0.82121 1.03751 1.47881 1.64212 1.14472 1.05748 1.21850 0.98770 0.98474 0.82278 1.20918 0.92352 0.95792 0.89671 1.42177 1.12955 1.60851 1.21429 1.19201 0.89243 1.26202 1.02324 0.91150 1.24734 0.97818 1.00258 0.98005 1.69650 1.31558 1.37362 1.19626 0.86174 0.83696 0.77699 0.78546 1.21633 1.21734 1.20717 1.16861 0.78980 0.85844 0.81815 1.90925 1.43572 1.16282 1.86272 1.22349 0.93352 1.00813 0.99404 1.24854 0.97148 0.98450 0.89893 1.20439 0.88868 1.00839 1.03948 1.73633 0.94909 1.13639 1.20408 1.84649 1.16795 1.55522 1.36246 1.24211 0.95508 1.04030 0.92950 1.16553 0.81756 0.75567 0.75573 1.93317 1.96385 1.48016 1.75872 1.93287 1.78992 1.95133 1.46568 1.93407 1.85853 1.55713 1.77199 0.91387 0.92399 0.91140 0.91244 0.88776 0.89224 0.89720 0.96238 0.95706 0.78234 0.93470 0.88811 0.89165 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.10 0.99 5.95 -4.04 -0.02 0.97 16 3 N -0.59 -7.93 2.47 -174.96 -0.43 -8.36 16 4 C 0.11 1.73 5.52 -4.04 -0.02 1.71 16 5 C 0.14 2.90 6.58 -4.04 -0.03 2.87 16 6 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 10 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 11 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.58 8.58 6.45 -12.53 -0.08 8.50 16 16 O -0.50 -9.31 16.69 5.27 0.09 -9.22 16 17 C -0.15 -1.85 4.41 -102.89 -0.45 -2.30 16 18 C 0.06 0.59 7.14 -79.77 -0.57 0.02 16 19 C -0.08 -0.59 9.86 36.01 0.36 -0.23 16 20 N -0.33 -3.50 12.01 34.78 0.42 -3.08 16 21 O 0.14 1.48 11.06 18.66 0.21 1.69 16 22 C -0.10 -1.17 6.55 -34.63 -0.23 -1.40 16 23 C 0.56 6.57 3.52 36.01 0.13 6.69 16 24 F -0.15 -1.73 17.30 2.25 0.04 -1.69 16 25 F -0.16 -1.73 17.30 2.25 0.04 -1.69 16 26 F -0.14 -2.03 16.09 2.25 0.04 -1.99 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.43 4.91 -51.92 -0.26 0.17 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.66 6.64 -51.93 -0.34 0.31 16 31 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 10.13 7.67 -40.82 -0.31 9.81 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.62 6.31 -51.93 -0.33 0.29 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -33.02 358.26 -4.18 -37.19 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.55 Total: 2.19 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.79 Total: 8.46 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.37 Total: -57.92 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.29 Total: -7.53 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.11 Total: -5.37 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.02 -4.18 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568778407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.769 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds