Wall clock time and date at job start Tue Mar 31 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.53001 * 109.47147 * 89.99619 * 4 3 2 6 6 N 1.46499 * 109.47147 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99869 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99537 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00511 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99587 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46807 * 90.00113 * 11 9 7 13 13 H 1.48495 * 109.47257 * 209.99902 * 11 9 7 14 14 H 1.48494 * 109.47278 * 330.00390 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 16 16 O 1.21613 * 119.99880 * 180.02562 * 15 3 2 17 17 C 1.47397 * 120.00384 * 0.02562 * 15 3 2 18 18 C 1.47107 * 128.56603 * 89.66752 * 17 15 3 19 19 C 1.50699 * 127.33405 * 0.02562 * 18 17 15 20 20 N 1.30009 * 105.32993 * 179.89666 * 18 17 15 21 21 O 1.20657 * 112.30345 * 0.40081 * 20 18 17 22 22 C 1.33490 * 113.15242 * 359.72982 * 21 20 18 23 23 C 1.50706 * 126.82733 * 180.02562 * 22 21 20 24 24 F 1.39909 * 109.46907 * 269.99917 * 23 22 21 25 25 F 1.39902 * 109.47178 * 29.99720 * 23 22 21 26 26 F 1.39902 * 109.47099 * 150.00113 * 23 22 21 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 31 31 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 32 32 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 33 33 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 34 34 H 1.09003 * 109.47272 * 300.00321 * 5 4 3 35 35 H 1.08997 * 109.47273 * 60.00010 * 5 4 3 36 36 H 0.96996 * 120.00177 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00749 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47263 * 89.99529 * 19 18 17 39 39 H 1.08999 * 109.47300 * 209.99917 * 19 18 17 40 40 H 1.09004 * 109.47258 * 330.00032 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7104 6 7 3.9515 2.5215 2.9795 7 6 5.1835 2.4483 3.5727 8 1 5.9754 1.8823 3.1049 9 6 5.4148 3.1027 4.7749 10 7 4.4499 3.7929 5.3448 11 14 7.0952 3.0024 5.5846 12 1 7.9460 4.1186 5.0992 13 1 6.9414 3.1020 7.0582 14 1 7.7342 1.7070 5.2400 15 6 2.2483 2.0147 -1.1672 16 8 2.6541 3.1611 -1.1671 17 6 2.0080 1.3181 -2.4437 18 6 0.7723 1.2630 -3.2399 19 6 -0.5480 1.9177 -2.9248 20 7 1.0625 0.5315 -4.2748 21 8 2.2031 0.1386 -4.2524 22 6 2.8807 0.5550 -3.1803 23 6 4.3179 0.2491 -2.8451 24 9 4.3796 -0.9216 -2.0814 25 9 5.0453 0.0737 -4.0271 26 9 4.8627 1.3111 -2.1154 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0955 3.1410 1.1384 33 1 1.5817 1.6877 2.0284 34 1 3.8745 0.7621 1.8407 35 1 4.3883 2.2155 0.9508 36 1 3.2402 3.0296 3.3998 37 1 4.6116 4.2505 6.1847 38 1 -0.5725 2.9155 -3.3629 39 1 -1.3587 1.3188 -3.3396 40 1 -0.6677 1.9924 -1.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568778407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:07 Heat of formation + Delta-G solvation = -119.065131 kcal Electronic energy + Delta-G solvation = -30500.454824 eV Core-core repulsion = 25711.148203 eV Total energy + Delta-G solvation = -4789.306620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.59155 -49.13573 -49.06033 -46.45829 -41.25299 -37.71906 -36.57311 -35.95875 -34.42346 -33.52244 -31.71763 -30.21520 -29.52292 -28.04195 -26.38775 -25.25998 -24.29041 -23.26011 -22.50699 -21.11145 -20.16363 -19.77328 -19.70705 -19.24320 -19.01756 -18.53293 -17.63623 -17.35704 -16.65282 -16.11983 -15.90118 -15.87884 -15.53310 -15.46874 -15.29216 -15.22663 -15.19234 -15.12378 -15.11369 -14.81944 -14.62405 -14.34833 -14.24418 -13.77988 -13.57218 -13.10616 -12.94474 -12.82988 -12.81328 -12.64448 -12.39123 -12.12682 -12.10334 -11.87781 -11.64693 -11.36681 -11.20383 -10.97846 -9.98489 -9.06089 -7.97401 -5.27709 -0.64855 0.35198 0.43627 0.94740 1.46144 1.48870 1.50074 1.57871 1.73131 2.16311 2.53283 2.60608 2.81260 2.82336 2.98532 3.33137 3.36663 3.44947 3.83310 4.02918 4.08125 4.13621 4.16975 4.32267 4.41641 4.49804 4.52936 4.58746 4.75913 4.84900 4.94932 5.03004 5.07557 5.31140 5.35541 5.47492 6.04318 6.24180 6.56441 6.71034 7.31188 8.01679 8.27636 9.25746 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.003543 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.164925 B = 7901.004841 C = 8970.055062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 N -0.584 5.584 4 C 0.123 3.877 5 C 0.146 3.854 6 N -0.740 5.740 7 C -0.250 4.250 8 H 0.071 0.929 9 C -0.068 4.068 10 N -0.966 5.966 11 Si 0.973 3.027 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.269 1.269 15 C 0.585 3.415 16 O -0.546 6.546 17 C -0.167 4.167 18 C 0.072 3.928 19 C -0.087 4.087 20 N -0.330 5.330 21 O 0.140 5.860 22 C -0.094 4.094 23 C 0.564 3.436 24 F -0.150 7.150 25 F -0.153 7.153 26 F -0.160 7.160 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.030 0.970 35 H 0.001 0.999 36 H 0.377 0.623 37 H 0.254 0.746 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -11.906 -19.822 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.001 3.999 5 C 0.018 3.982 6 N -0.384 5.384 7 C -0.382 4.382 8 H 0.089 0.911 9 C -0.261 4.261 10 N -0.616 5.616 11 Si 0.802 3.198 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.194 1.194 15 C 0.370 3.630 16 O -0.423 6.423 17 C -0.174 4.174 18 C -0.089 4.089 19 C -0.144 4.144 20 N -0.032 5.032 21 O 0.072 5.928 22 C -0.159 4.159 23 C 0.508 3.492 24 F -0.131 7.131 25 F -0.134 7.134 26 F -0.141 7.141 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.048 0.952 35 H 0.019 0.981 36 H 0.210 0.790 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.195 -11.799 -20.846 26.879 hybrid contribution 1.464 0.726 1.365 2.129 sum -10.731 -11.073 -19.481 24.846 Atomic orbital electron populations 1.22303 0.93172 1.04230 1.03144 1.21974 0.96694 0.79932 1.04406 1.47918 1.63521 1.15635 1.04491 1.21504 0.96309 0.98085 0.84037 1.20960 0.94772 0.95381 0.87052 1.42329 1.12057 1.61205 1.22805 1.19556 0.90318 1.25776 1.02556 0.91055 1.25548 1.01455 1.00349 0.98770 1.69792 1.33466 1.38375 1.19924 0.85151 0.79409 0.78001 0.77264 1.21604 1.21641 1.19358 1.17121 0.77863 0.85291 0.82753 1.90899 1.45820 1.18503 1.87071 1.22130 0.94828 1.01631 0.98844 1.25261 0.97421 0.97499 0.88753 1.20655 0.87845 1.01371 1.04525 1.73641 0.94757 1.14192 1.20579 1.84668 1.16904 1.55483 1.35718 1.24085 0.95127 1.03727 0.93008 1.16536 0.81954 0.75182 0.75555 1.93323 1.96388 1.47590 1.75828 1.93299 1.78917 1.95047 1.46107 1.93373 1.86230 1.56749 1.77755 0.91523 0.91888 0.88991 0.90478 0.88270 0.90986 0.87394 0.95199 0.98112 0.79022 0.93767 0.88052 0.86777 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 71.98 0.74 -1.43 16 2 C 0.09 1.65 5.95 86.38 0.51 2.16 16 3 N -0.58 -15.24 2.47 -825.71 -2.04 -17.29 16 4 C 0.12 3.94 5.52 86.38 0.48 4.42 16 5 C 0.15 6.05 6.58 86.38 0.57 6.62 16 6 N -0.74 -38.30 5.60 -343.45 -1.92 -40.23 16 7 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 10 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 11 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.58 17.15 6.45 86.66 0.56 17.70 16 16 O -0.55 -21.00 16.69 -4.07 -0.07 -21.07 16 17 C -0.17 -3.90 4.41 -18.74 -0.08 -3.99 16 18 C 0.07 1.32 7.14 45.16 0.32 1.64 16 19 C -0.09 -1.00 9.86 71.24 0.70 -0.30 16 20 N -0.33 -6.42 12.01 -44.78 -0.54 -6.96 16 21 O 0.14 2.80 11.06 77.02 0.85 3.65 16 22 C -0.09 -2.06 6.55 25.48 0.17 -1.90 16 23 C 0.56 12.90 3.52 71.24 0.25 13.15 16 24 F -0.15 -3.21 17.30 44.97 0.78 -2.43 16 25 F -0.15 -3.21 17.30 44.97 0.78 -2.43 16 26 F -0.16 -4.69 16.09 44.97 0.72 -3.97 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.74 4.91 -2.38 -0.01 0.73 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.30 6.64 -2.39 -0.02 1.28 16 31 H 0.10 1.72 8.07 -2.39 -0.02 1.70 16 32 H 0.07 2.59 7.42 -2.39 -0.02 2.57 16 33 H 0.11 2.96 8.07 -2.38 -0.02 2.94 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.38 20.26 7.67 -92.71 -0.71 19.55 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 1.06 6.31 -2.38 -0.02 1.04 16 Total: -1.00 -71.38 358.26 6.79 -64.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.40 Total: 15.17 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.52 Total: 21.13 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.22 Total: -123.12 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.78 Total: -17.41 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 2.28 Total: -8.83 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -71.38 6.79 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568778407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.475 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds