Wall clock time and date at job start Tue Mar 31 2020 19:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99904 * 2 1 4 4 C 1.53008 * 109.47174 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47005 * 66.95052 * 4 3 2 6 6 C 1.37097 * 120.00375 * 264.74573 * 5 4 3 7 7 H 1.07999 * 119.99822 * 53.60353 * 6 5 4 8 8 C 1.38953 * 119.99838 * 233.61603 * 6 5 4 9 9 N 1.31410 * 119.99843 * 201.80318 * 8 6 5 10 10 Si 1.86798 * 120.00228 * 21.79689 * 8 6 5 11 11 H 1.48505 * 109.46939 * 93.29726 * 10 8 6 12 12 H 1.48496 * 109.47351 * 213.29944 * 10 8 6 13 13 H 1.48500 * 109.47297 * 333.30290 * 10 8 6 14 14 C 1.34781 * 119.99725 * 84.74273 * 5 4 3 15 15 O 1.21283 * 119.99906 * 4.62416 * 14 5 4 16 16 C 1.50704 * 119.99764 * 184.62635 * 14 5 4 17 17 C 1.53046 * 109.45745 * 193.82991 * 16 14 5 18 18 C 1.53192 * 109.30679 * 178.62563 * 17 16 14 19 19 N 1.46920 * 108.77831 * 54.63517 * 18 17 16 20 20 S 1.65600 * 120.62983 * 126.36407 * 19 18 17 21 21 N 1.65603 * 107.22045 * 90.00151 * 20 19 18 22 22 O 1.42109 * 106.40151 * 203.54257 * 20 19 18 23 23 O 1.42101 * 106.40622 * 336.46097 * 20 19 18 24 24 C 1.46923 * 118.73985 * 306.64197 * 19 18 17 25 25 C 1.52763 * 109.00949 * 53.30646 * 24 19 18 26 26 H 1.08997 * 109.47319 * 300.00176 * 1 2 3 27 27 H 1.09003 * 109.46867 * 59.99786 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47160 * 60.00025 * 3 2 1 30 30 H 1.09003 * 109.47616 * 299.99910 * 3 2 1 31 31 H 1.09000 * 109.46777 * 306.94741 * 4 3 2 32 32 H 1.09002 * 109.46706 * 186.95584 * 4 3 2 33 33 H 0.96999 * 120.00239 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.45747 * 313.79725 * 16 14 5 35 35 H 1.08994 * 109.49851 * 58.67537 * 17 16 14 36 36 H 1.08998 * 109.52241 * 298.59163 * 17 16 14 37 37 H 1.09000 * 109.58937 * 294.84007 * 18 17 16 38 38 H 1.09004 * 109.69871 * 174.49320 * 18 17 16 39 39 H 0.96994 * 119.99876 * 270.00154 * 21 20 19 40 40 H 0.97006 * 119.99956 * 89.99603 * 21 20 19 41 41 H 1.08996 * 109.58938 * 173.14584 * 24 19 18 42 42 H 1.09005 * 109.58450 * 293.57038 * 24 19 18 43 43 H 1.09004 * 109.56304 * 185.55721 * 25 24 19 44 44 H 1.08994 * 109.35814 * 65.50510 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9801 0.6068 -1.2700 6 6 4.2054 -0.7419 -1.3682 7 1 3.4350 -1.4407 -1.0771 8 6 5.4250 -1.2099 -1.8419 9 7 5.5148 -2.4227 -2.3397 10 14 6.9368 -0.1150 -1.7712 11 1 7.6833 -0.3824 -0.5155 12 1 7.8105 -0.4015 -2.9371 13 1 6.5184 1.3095 -1.8043 14 6 4.1676 1.4012 -2.3425 15 8 4.0498 2.6035 -2.2347 16 6 4.5235 0.7955 -3.6758 17 6 5.0131 1.8951 -4.6210 18 6 5.4063 1.2710 -5.9636 19 7 4.2679 0.4968 -6.4767 20 16 3.6786 0.7717 -7.9997 21 7 4.5015 -0.2284 -9.0318 22 8 2.3304 0.3225 -7.9954 23 8 4.0545 2.0987 -8.3421 24 6 3.6583 -0.5216 -5.6108 25 6 3.2882 0.1187 -4.2741 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8485 0.5404 0.8222 32 1 3.9781 2.1730 0.1251 33 1 6.3661 -2.7493 -2.6707 34 1 5.3127 0.0559 -3.5395 35 1 5.8787 2.3922 -4.1834 36 1 4.2164 2.6224 -4.7773 37 1 6.2630 0.6118 -5.8232 38 1 5.6630 2.0575 -6.6733 39 1 5.3219 0.0757 -9.4504 40 1 4.1631 -1.1183 -9.2175 41 1 2.7605 -0.9159 -6.0865 42 1 4.3695 -1.3300 -5.4410 43 1 2.9263 -0.6486 -3.5896 44 1 2.5074 0.8622 -4.4336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570083553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:51 Heat of formation + Delta-G solvation = -148.533938 kcal Electronic energy + Delta-G solvation = -29499.429023 eV Core-core repulsion = 25386.145231 eV Total energy + Delta-G solvation = -4113.283792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57269 -37.67918 -37.20267 -36.92003 -35.78395 -34.71290 -33.22221 -32.61541 -31.73121 -30.70610 -29.31091 -26.03232 -25.04333 -24.27225 -22.99558 -22.15573 -20.51472 -19.47437 -18.94278 -17.79324 -17.45294 -17.26865 -17.01549 -16.05713 -15.81612 -15.36175 -15.18948 -14.84950 -14.49024 -14.23000 -14.14130 -14.02068 -13.63386 -13.23394 -12.99694 -12.84972 -12.58296 -12.29435 -12.15932 -12.10277 -12.03314 -11.65317 -11.52871 -11.46405 -11.34086 -11.30876 -10.91945 -10.85042 -10.73999 -10.56784 -10.42979 -10.09643 -10.02816 -9.78410 -9.20468 -8.95662 -8.93642 -8.44981 -7.52457 -6.49201 -4.19571 0.68041 3.06485 3.08361 3.18181 3.28276 3.67572 3.73346 4.09127 4.30068 4.39871 4.45073 4.87408 4.90642 5.34530 5.42028 5.53758 5.56503 5.63291 5.65022 5.74968 5.82913 5.84464 5.85295 5.93010 5.95117 5.99234 6.03416 6.21659 6.24622 6.33697 6.43206 6.52601 6.57383 6.63462 6.67780 6.94241 7.00078 7.12896 7.65292 7.69733 7.81166 8.58890 9.00189 9.31473 9.74082 10.59443 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.004715 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.881356 B = 5937.308312 C = 6739.990517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.466 5.466 6 C -0.334 4.334 7 H 0.105 0.895 8 C 0.078 3.922 9 N -0.853 5.853 10 Si 0.842 3.158 11 H -0.278 1.278 12 H -0.279 1.279 13 H -0.255 1.255 14 C 0.499 3.501 15 O -0.597 6.597 16 C -0.093 4.093 17 C -0.115 4.115 18 C 0.120 3.880 19 N -1.005 6.005 20 S 2.790 3.210 21 N -1.256 6.256 22 O -0.979 6.979 23 O -0.982 6.982 24 C 0.121 3.879 25 C -0.106 4.106 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.273 0.727 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.415 0.585 40 H 0.416 0.584 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 1.207 -7.080 7.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.024 4.024 4 C -0.014 4.014 5 N -0.187 5.187 6 C -0.462 4.462 7 H 0.123 0.877 8 C -0.129 4.129 9 N -0.488 5.488 10 Si 0.667 3.333 11 H -0.204 1.204 12 H -0.204 1.204 13 H -0.179 1.179 14 C 0.289 3.711 15 O -0.482 6.482 16 C -0.114 4.114 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.847 5.847 20 S 2.796 3.204 21 N -0.927 5.927 22 O -0.963 6.963 23 O -0.966 6.966 24 C -0.003 4.003 25 C -0.146 4.146 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.242 0.758 40 H 0.244 0.756 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.047 2.194 -7.218 7.817 hybrid contribution 1.355 -0.006 0.098 1.359 sum -0.692 2.187 -7.120 7.480 Atomic orbital electron populations 1.22654 0.82699 1.02071 0.99022 1.88064 1.18086 1.27591 1.95131 1.22953 0.95566 0.84628 0.99261 1.21520 0.91274 0.99327 0.89314 1.43607 1.60863 1.07983 1.06260 1.18989 1.00236 0.80027 1.46906 0.87718 1.25570 0.97485 0.95230 0.94652 1.69761 1.26301 1.17259 1.35470 0.87320 0.84194 0.83263 0.78511 1.20379 1.20422 1.17892 1.20537 0.78320 0.86260 0.85969 1.90514 1.56480 1.15366 1.85798 1.21100 1.00119 0.97757 0.92418 1.21729 1.02176 0.97892 0.93699 1.21483 0.87602 0.94642 0.96834 1.58037 1.45610 1.49800 1.31232 1.01613 0.73294 0.73160 0.72380 1.53869 1.42045 1.32087 1.64731 1.93616 1.33338 1.82640 1.86667 1.93606 1.84270 1.35463 1.83259 1.21459 0.97999 0.89651 0.91211 1.21521 0.96401 1.00941 0.95708 0.95059 0.94705 0.90120 0.93983 0.93456 0.90081 0.90661 0.91629 0.88429 0.91075 0.90716 0.91546 0.89240 0.75761 0.75599 0.89293 0.90497 0.87833 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.03 10.41 -35.23 -0.37 -7.40 16 3 C 0.05 0.98 6.24 37.16 0.23 1.21 16 4 C 0.11 2.22 5.75 -4.04 -0.02 2.19 16 5 N -0.47 -10.75 1.88 -114.81 -0.22 -10.97 16 6 C -0.33 -8.20 7.75 -14.93 -0.12 -8.31 16 7 H 0.11 2.82 7.95 -52.49 -0.42 2.41 16 8 C 0.08 1.91 3.92 -17.47 -0.07 1.84 16 9 N -0.85 -21.45 13.96 55.50 0.77 -20.68 16 10 Si 0.84 19.32 25.37 -169.99 -4.31 15.00 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.25 -6.08 5.83 56.52 0.33 -5.75 16 14 C 0.50 11.64 4.55 -10.98 -0.05 11.59 16 15 O -0.60 -14.89 15.66 5.56 0.09 -14.80 16 16 C -0.09 -1.93 1.20 -91.73 -0.11 -2.04 16 17 C -0.12 -2.13 4.73 -26.61 -0.13 -2.26 16 18 C 0.12 1.79 6.48 -3.71 -0.02 1.77 16 19 N -1.01 -14.71 3.35 -113.77 -0.38 -15.09 16 20 S 2.79 37.68 6.74 -107.50 -0.72 36.96 16 21 N -1.26 -10.98 9.58 60.35 0.58 -10.40 16 22 O -0.98 -16.01 16.72 -57.17 -0.96 -16.97 16 23 O -0.98 -15.82 16.73 -57.17 -0.96 -16.78 16 24 C 0.12 1.93 6.45 -3.93 -0.03 1.91 16 25 C -0.11 -2.03 5.23 -26.83 -0.14 -2.17 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 32 H 0.08 1.50 7.52 -51.93 -0.39 1.10 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.10 2.14 3.47 -51.93 -0.18 1.96 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.43 8.00 -51.93 -0.42 1.01 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.19 6.92 -51.93 -0.36 0.83 16 39 H 0.42 2.81 8.96 -34.47 -0.31 2.50 16 40 H 0.42 2.92 8.96 -34.48 -0.31 2.61 16 41 H 0.09 1.30 6.91 -51.93 -0.36 0.94 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.10 2.16 6.91 -51.93 -0.36 1.80 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -32.37 358.94 -6.93 -39.30 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.53 Total: 9.10 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 0.66 Total: 7.31 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.76 Total: -57.13 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -2.19 Total: -55.95 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.31 Total: 15.00 kcal Atomic # 16 Polarization: 37.68 SS G_CDS: -0.72 Total: 36.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.37 -6.93 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570083553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.234 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds