Wall clock time and date at job start Tue Mar 31 2020 19:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99904 * 2 1 4 4 C 1.53008 * 109.47174 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47005 * 66.95052 * 4 3 2 6 6 C 1.37097 * 120.00375 * 264.74573 * 5 4 3 7 7 H 1.07999 * 119.99822 * 53.60353 * 6 5 4 8 8 C 1.38953 * 119.99838 * 233.61603 * 6 5 4 9 9 N 1.31410 * 119.99843 * 201.80318 * 8 6 5 10 10 Si 1.86798 * 120.00228 * 21.79689 * 8 6 5 11 11 H 1.48505 * 109.46939 * 93.29726 * 10 8 6 12 12 H 1.48496 * 109.47351 * 213.29944 * 10 8 6 13 13 H 1.48500 * 109.47297 * 333.30290 * 10 8 6 14 14 C 1.34781 * 119.99725 * 84.74273 * 5 4 3 15 15 O 1.21283 * 119.99906 * 4.62416 * 14 5 4 16 16 C 1.50704 * 119.99764 * 184.62635 * 14 5 4 17 17 C 1.53046 * 109.45745 * 193.82991 * 16 14 5 18 18 C 1.53192 * 109.30679 * 178.62563 * 17 16 14 19 19 N 1.46920 * 108.77831 * 54.63517 * 18 17 16 20 20 S 1.65600 * 120.62983 * 126.36407 * 19 18 17 21 21 N 1.65603 * 107.22045 * 90.00151 * 20 19 18 22 22 O 1.42109 * 106.40151 * 203.54257 * 20 19 18 23 23 O 1.42101 * 106.40622 * 336.46097 * 20 19 18 24 24 C 1.46923 * 118.73985 * 306.64197 * 19 18 17 25 25 C 1.52763 * 109.00949 * 53.30646 * 24 19 18 26 26 H 1.08997 * 109.47319 * 300.00176 * 1 2 3 27 27 H 1.09003 * 109.46867 * 59.99786 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47160 * 60.00025 * 3 2 1 30 30 H 1.09003 * 109.47616 * 299.99910 * 3 2 1 31 31 H 1.09000 * 109.46777 * 306.94741 * 4 3 2 32 32 H 1.09002 * 109.46706 * 186.95584 * 4 3 2 33 33 H 0.96999 * 120.00239 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.45747 * 313.79725 * 16 14 5 35 35 H 1.08994 * 109.49851 * 58.67537 * 17 16 14 36 36 H 1.08998 * 109.52241 * 298.59163 * 17 16 14 37 37 H 1.09000 * 109.58937 * 294.84007 * 18 17 16 38 38 H 1.09004 * 109.69871 * 174.49320 * 18 17 16 39 39 H 0.96994 * 119.99876 * 270.00154 * 21 20 19 40 40 H 0.97006 * 119.99956 * 89.99603 * 21 20 19 41 41 H 1.08996 * 109.58938 * 173.14584 * 24 19 18 42 42 H 1.09005 * 109.58450 * 293.57038 * 24 19 18 43 43 H 1.09004 * 109.56304 * 185.55721 * 25 24 19 44 44 H 1.08994 * 109.35814 * 65.50510 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9801 0.6068 -1.2700 6 6 4.2054 -0.7419 -1.3682 7 1 3.4350 -1.4407 -1.0771 8 6 5.4250 -1.2099 -1.8419 9 7 5.5148 -2.4227 -2.3397 10 14 6.9368 -0.1150 -1.7712 11 1 7.6833 -0.3824 -0.5155 12 1 7.8105 -0.4015 -2.9371 13 1 6.5184 1.3095 -1.8043 14 6 4.1676 1.4012 -2.3425 15 8 4.0498 2.6035 -2.2347 16 6 4.5235 0.7955 -3.6758 17 6 5.0131 1.8951 -4.6210 18 6 5.4063 1.2710 -5.9636 19 7 4.2679 0.4968 -6.4767 20 16 3.6786 0.7717 -7.9997 21 7 4.5015 -0.2284 -9.0318 22 8 2.3304 0.3225 -7.9954 23 8 4.0545 2.0987 -8.3421 24 6 3.6583 -0.5216 -5.6108 25 6 3.2882 0.1187 -4.2741 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8485 0.5404 0.8222 32 1 3.9781 2.1730 0.1251 33 1 6.3661 -2.7493 -2.6707 34 1 5.3127 0.0559 -3.5395 35 1 5.8787 2.3922 -4.1834 36 1 4.2164 2.6224 -4.7773 37 1 6.2630 0.6118 -5.8232 38 1 5.6630 2.0575 -6.6733 39 1 5.3219 0.0757 -9.4504 40 1 4.1631 -1.1183 -9.2175 41 1 2.7605 -0.9159 -6.0865 42 1 4.3695 -1.3300 -5.4410 43 1 2.9263 -0.6486 -3.5896 44 1 2.5074 0.8622 -4.4336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570083553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:50 Heat of formation + Delta-G solvation = -175.573881 kcal Electronic energy + Delta-G solvation = -29500.601563 eV Core-core repulsion = 25386.145231 eV Total energy + Delta-G solvation = -4114.456332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.27822 -39.09253 -38.39423 -38.38149 -36.97657 -36.55700 -34.30345 -34.04243 -33.36909 -32.06498 -30.88000 -27.33354 -26.67929 -25.93326 -24.38115 -23.66039 -22.02144 -20.88674 -20.31189 -19.26471 -18.77370 -18.32322 -18.19046 -17.58542 -17.43870 -16.88142 -16.46184 -16.35459 -16.15936 -15.81888 -15.45625 -15.36200 -15.22449 -14.77756 -14.54338 -14.38169 -14.19709 -13.55821 -13.45504 -13.29032 -13.25977 -13.16687 -13.03625 -12.97172 -12.91742 -12.83173 -12.67207 -12.31106 -12.13745 -11.99399 -11.93868 -11.57558 -11.49397 -11.25313 -10.82470 -10.61952 -10.40412 -10.00228 -9.37560 -8.42020 -6.13894 -0.40867 1.22427 1.32766 1.42014 1.90878 2.01045 2.21349 2.65523 2.70501 2.92590 3.05188 3.28385 3.64454 3.94007 3.95835 4.14005 4.20338 4.22802 4.32387 4.43649 4.44041 4.48833 4.56221 4.57378 4.66661 4.73458 4.81249 4.84624 4.87107 4.91662 4.97424 5.03221 5.17305 5.25048 5.35348 5.38650 5.60913 5.82228 5.94809 6.34184 6.41607 6.60130 7.07792 7.44941 7.88489 8.70001 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.004715 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.881356 B = 5937.308312 C = 6739.990517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.100 3.900 5 N -0.471 5.471 6 C -0.330 4.330 7 H 0.075 0.925 8 C 0.060 3.940 9 N -0.873 5.873 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.259 1.259 13 H -0.271 1.271 14 C 0.489 3.511 15 O -0.619 6.619 16 C -0.094 4.094 17 C -0.116 4.116 18 C 0.122 3.878 19 N -1.007 6.007 20 S 2.812 3.188 21 N -1.233 6.233 22 O -1.007 7.007 23 O -1.006 7.006 24 C 0.129 3.871 25 C -0.102 4.102 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.280 0.720 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.428 0.572 40 H 0.428 0.572 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 1.042 -8.255 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.192 5.192 6 C -0.458 4.458 7 H 0.093 0.907 8 C -0.146 4.146 9 N -0.509 5.509 10 Si 0.708 3.292 11 H -0.209 1.209 12 H -0.184 1.184 13 H -0.196 1.196 14 C 0.280 3.720 15 O -0.505 6.505 16 C -0.116 4.116 17 C -0.156 4.156 18 C -0.003 4.003 19 N -0.847 5.847 20 S 2.817 3.183 21 N -0.911 5.911 22 O -0.991 6.991 23 O -0.990 6.990 24 C 0.004 3.996 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.259 0.741 40 H 0.259 0.741 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.407 2.007 -8.395 8.745 hybrid contribution 1.076 0.026 0.500 1.187 sum -0.331 2.034 -7.894 8.159 Atomic orbital electron populations 1.22861 0.80376 1.03361 1.00267 1.88013 1.20721 1.27979 1.95370 1.22811 0.93996 0.84685 1.00010 1.21695 0.93048 0.99247 0.88262 1.43698 1.60702 1.07510 1.07268 1.18627 0.99723 0.80247 1.47207 0.90702 1.25789 0.98621 0.95871 0.94302 1.69794 1.27094 1.18082 1.35901 0.86709 0.82436 0.81157 0.78881 1.20875 1.18381 1.19593 1.21064 0.77962 0.86124 0.86897 1.90483 1.57597 1.16182 1.86259 1.21143 1.00406 0.98234 0.91773 1.21740 1.01548 0.97084 0.95212 1.21525 0.88015 0.95506 0.95288 1.58018 1.45495 1.49473 1.31732 1.00768 0.72621 0.72710 0.72161 1.53339 1.42312 1.32180 1.63222 1.93578 1.35452 1.83023 1.87042 1.93573 1.84530 1.37342 1.83524 1.21322 0.98848 0.89614 0.89795 1.21440 0.95601 1.00035 0.97104 0.92549 0.94612 0.88916 0.90547 0.95189 0.89725 0.90460 0.90976 0.89309 0.91416 0.91971 0.89779 0.87159 0.74086 0.74089 0.87893 0.90100 0.90237 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.26 10.41 -148.98 -1.55 -16.81 16 3 C 0.06 2.27 6.24 71.98 0.45 2.71 16 4 C 0.10 4.12 5.75 86.38 0.50 4.61 16 5 N -0.47 -22.12 1.88 -635.53 -1.20 -23.32 16 6 C -0.33 -16.52 7.75 84.04 0.65 -15.87 16 7 H 0.08 4.19 7.95 -2.91 -0.02 4.17 16 8 C 0.06 2.95 3.92 84.93 0.33 3.29 16 9 N -0.87 -43.62 13.96 21.66 0.30 -43.32 16 10 Si 0.88 39.41 25.37 68.60 1.74 41.15 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.27 -12.79 5.83 99.48 0.58 -12.21 16 14 C 0.49 23.15 4.55 87.66 0.40 23.55 16 15 O -0.62 -31.37 15.66 -3.04 -0.05 -31.42 16 16 C -0.09 -3.93 1.20 -11.51 -0.01 -3.95 16 17 C -0.12 -4.22 4.73 30.67 0.15 -4.08 16 18 C 0.12 3.39 6.48 86.36 0.56 3.95 16 19 N -1.01 -27.61 3.35 -513.86 -1.72 -29.34 16 20 S 2.81 70.06 6.74 -56.49 -0.38 69.68 16 21 N -1.23 -17.71 9.58 37.02 0.35 -17.35 16 22 O -1.01 -31.36 16.72 -128.00 -2.14 -33.50 16 23 O -1.01 -30.36 16.73 -128.00 -2.14 -32.51 16 24 C 0.13 3.97 6.45 86.22 0.56 4.53 16 25 C -0.10 -3.94 5.23 30.53 0.16 -3.78 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 3.35 8.00 -2.39 -0.02 3.33 16 32 H 0.08 3.10 7.52 -2.39 -0.02 3.08 16 33 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 34 H 0.09 3.85 3.47 -2.38 -0.01 3.85 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.38 8.00 -2.39 -0.02 2.36 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 38 H 0.11 2.64 6.92 -2.39 -0.02 2.62 16 39 H 0.43 4.29 8.96 -96.75 -0.87 3.42 16 40 H 0.43 4.60 8.96 -96.74 -0.87 3.73 16 41 H 0.10 2.87 6.91 -2.39 -0.02 2.86 16 42 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.08 3.42 6.91 -2.39 -0.02 3.41 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.58 358.94 -2.62 -72.21 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.82 Total: 27.56 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 4.98 Total: 16.98 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -2.26 Total: -113.33 kcal Atomic # 8 Polarization: -108.35 SS G_CDS: -5.88 Total: -114.23 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.74 Total: 41.15 kcal Atomic # 16 Polarization: 70.06 SS G_CDS: -0.38 Total: 69.68 kcal Total: -69.58 -2.62 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570083553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.369 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds