Wall clock time and date at job start Tue Mar 31 2020 19:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99817 * 2 1 4 4 C 1.50700 * 110.78062 * 305.84741 * 3 2 1 5 5 O 1.20821 * 120.00007 * 140.39226 * 4 3 2 6 6 O 1.34229 * 119.99889 * 320.38919 * 4 3 2 7 7 C 1.55161 * 110.71743 * 69.08556 * 3 2 1 8 8 C 1.55130 * 101.48600 * 82.69877 * 7 3 2 9 9 N 1.47417 * 104.72478 * 37.29056 * 8 7 3 10 10 C 1.34779 * 125.64795 * 155.81972 * 9 8 7 11 11 O 1.21578 * 119.99774 * 179.69709 * 10 9 8 12 12 N 1.34779 * 119.99780 * 359.96566 * 10 9 8 13 13 C 1.39244 * 119.99642 * 174.78635 * 12 10 9 14 14 C 1.39690 * 119.57525 * 185.49986 * 13 12 10 15 15 C 1.38643 * 119.49738 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.66874 * 0.02562 * 15 14 13 17 17 C 1.40563 * 119.13054 * 359.97438 * 16 15 14 18 18 C 1.41339 * 119.78394 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00365 * 0.02562 * 18 17 16 20 20 C 1.40027 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.30745 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47068 * 60.00085 * 22 20 18 24 24 H 1.48505 * 109.47591 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47338 * 300.00602 * 22 20 18 26 26 N 1.31905 * 119.57641 * 5.23493 * 13 12 10 27 27 C 1.47027 * 108.70540 * 335.55469 * 9 8 7 28 28 H 1.08999 * 109.47053 * 55.22076 * 1 2 3 29 29 H 1.09006 * 109.46918 * 175.21685 * 1 2 3 30 30 H 1.08996 * 109.47229 * 295.21397 * 1 2 3 31 31 H 0.96696 * 116.99821 * 180.02562 * 6 4 3 32 32 H 1.09000 * 111.00255 * 200.93647 * 7 3 2 33 33 H 1.08996 * 111.00335 * 324.78507 * 7 3 2 34 34 H 1.09003 * 110.49314 * 278.44954 * 8 7 3 35 35 H 1.09002 * 110.34434 * 156.05828 * 8 7 3 36 36 H 0.96992 * 120.00172 * 354.78819 * 12 10 9 37 37 H 1.07994 * 120.24892 * 0.02751 * 14 13 12 38 38 H 1.07997 * 120.66188 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.43106 * 179.97438 * 16 15 14 40 40 H 0.97003 * 120.00045 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.88156 * 120.69996 * 27 9 8 42 42 H 1.08992 * 109.88208 * 241.86789 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4738 2.1296 -1.1421 5 8 1.2244 3.3002 -0.9774 6 8 1.2733 1.5630 -2.3423 7 6 1.7601 2.0177 1.3557 8 6 2.9014 1.4314 2.2277 9 7 4.0516 1.3179 1.3126 10 6 5.3485 1.3025 1.6792 11 8 6.2175 1.1988 0.8353 12 7 5.6817 1.3965 2.9818 13 6 7.0129 1.2717 3.3706 14 6 7.3356 1.2549 4.7296 15 6 8.6616 1.1311 5.1149 16 6 9.6312 1.0277 4.1333 17 6 9.2427 1.0509 2.7826 18 6 10.2217 0.9468 1.7686 19 1 11.2644 0.8495 2.0325 20 6 9.8397 0.9689 0.4216 21 7 8.5773 1.0862 0.1020 22 14 11.1336 0.8321 -0.9187 23 1 11.8625 -0.4535 -0.7735 24 1 10.4755 0.8811 -2.2490 25 1 12.0916 1.9604 -0.7989 26 7 7.9525 1.1655 2.4510 27 6 3.5495 1.2178 -0.0657 28 1 -0.3633 0.5862 -0.8441 29 1 -0.3633 -1.0241 -0.0857 30 1 -0.3633 0.4378 0.9297 31 1 0.9283 2.1317 -3.0441 32 1 1.8581 3.0984 1.2531 33 1 0.7843 1.7522 1.7622 34 1 2.6230 0.4496 2.6108 35 1 3.1358 2.1078 3.0497 36 1 4.9942 1.5511 3.6483 37 1 6.5580 1.3378 5.4745 38 1 8.9322 1.1156 6.1603 39 1 10.6728 0.9305 4.4014 40 1 8.3127 1.1019 -0.8311 41 1 3.9424 2.0400 -0.6639 42 1 3.8483 0.2642 -0.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571084378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:14 Heat of formation + Delta-G solvation = -76.307197 kcal Electronic energy + Delta-G solvation = -29481.946011 eV Core-core repulsion = 25236.350254 eV Total energy + Delta-G solvation = -4245.595757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32452 -39.68730 -38.61706 -37.59776 -36.63640 -35.78665 -34.08456 -32.98601 -31.08543 -30.23254 -29.66794 -28.76881 -26.88605 -25.62387 -24.70408 -23.23905 -21.74747 -21.14589 -20.47075 -19.22760 -18.78935 -18.18657 -17.79728 -17.17054 -16.38605 -16.03750 -15.78403 -15.28217 -14.96594 -14.78535 -14.70358 -14.45673 -14.28581 -13.69965 -13.57155 -13.37760 -13.07049 -12.77619 -12.58426 -12.25469 -12.20367 -11.97003 -11.88846 -11.85075 -11.84310 -11.40510 -11.09855 -10.93027 -10.88467 -10.62345 -10.42149 -10.14563 -9.90975 -9.67654 -9.15855 -8.98980 -8.25663 -7.91906 -7.19479 -6.92210 -6.07351 -4.35340 1.66341 2.42543 2.87143 2.91652 3.16143 3.20402 3.22090 3.29600 3.31515 3.96950 4.10915 4.14292 4.15786 4.52243 4.68386 4.81770 4.91113 4.98580 5.00555 5.07617 5.30152 5.37896 5.47439 5.54368 5.69204 5.84231 6.05405 6.07597 6.11605 6.29557 6.52964 6.58363 6.74217 6.82981 6.88499 7.24625 7.38294 7.47509 7.64638 7.74739 7.84844 8.18871 8.29929 8.62189 8.82029 9.09609 9.53650 10.29996 10.53921 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.003523 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.374689 B = 7944.749255 C = 9485.491983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.114 3.886 4 C 0.471 3.529 5 O -0.500 6.500 6 O -0.502 6.502 7 C -0.144 4.144 8 C 0.106 3.894 9 N -0.644 5.644 10 C 0.687 3.313 11 O -0.454 6.454 12 N -0.668 5.668 13 C 0.387 3.613 14 C -0.357 4.357 15 C -0.035 4.035 16 C -0.306 4.306 17 C 0.272 3.728 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.473 5.473 27 C 0.157 3.843 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.410 0.590 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.273 0.727 41 H 0.082 0.918 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 0.183 -1.685 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.262 6.262 3 C 0.072 3.928 4 C 0.311 3.689 5 O -0.387 6.387 6 O -0.313 6.313 7 C -0.182 4.182 8 C -0.018 4.018 9 N -0.390 5.390 10 C 0.387 3.613 11 O -0.316 6.316 12 N -0.317 5.317 13 C 0.147 3.853 14 C -0.383 4.383 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.269 5.269 22 Si 0.720 3.280 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 N -0.191 5.191 27 C 0.032 3.968 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.269 0.731 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.286 -0.004 -3.109 18.548 hybrid contribution -0.306 0.627 0.244 0.739 sum -18.592 0.623 -2.865 18.821 Atomic orbital electron populations 1.22957 0.80520 1.03814 1.00283 1.88142 1.20137 1.23653 1.94285 1.22437 0.95973 0.83705 0.90682 1.23835 0.74343 0.86902 0.83771 1.90748 1.46949 1.17479 1.83532 1.84655 1.77812 1.47488 1.21378 1.23392 1.00160 1.02201 0.92448 1.22212 0.85551 1.00700 0.93322 1.47728 1.04199 1.80882 1.06144 1.15882 0.80654 0.80522 0.84230 1.91410 1.43396 1.48834 1.48004 1.42518 1.07474 1.75223 1.06478 1.18322 0.84105 0.93711 0.89150 1.20411 0.96476 1.28165 0.93270 1.20540 0.92540 0.95769 0.97103 1.21618 0.97888 1.19068 0.94379 1.18367 0.88846 0.87935 0.90162 1.19547 0.93875 1.42131 0.89998 0.90013 1.26184 0.95759 0.95439 0.99872 1.70323 1.14413 1.23408 1.18730 0.86597 0.81651 0.79637 0.80151 1.19196 1.20435 1.19228 1.68673 0.99209 1.20166 1.31068 1.21327 0.86060 1.04146 0.85222 0.93726 0.88438 0.93316 0.73134 0.87735 0.88856 0.91021 0.90387 0.77139 0.89157 0.88599 0.88574 0.91554 0.90006 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.45 101.05 1.06 1.21 16 2 O -0.34 -3.80 10.29 -45.23 -0.47 -4.27 16 3 C 0.11 1.31 0.86 -89.93 -0.08 1.23 16 4 C 0.47 5.21 5.77 36.01 0.21 5.42 16 5 O -0.50 -6.54 16.47 -18.75 -0.31 -6.85 16 6 O -0.50 -4.37 12.59 -43.53 -0.55 -4.92 16 7 C -0.14 -1.42 5.92 -24.46 -0.14 -1.57 16 8 C 0.11 1.20 6.62 -2.41 -0.02 1.18 16 9 N -0.64 -10.37 3.32 -176.10 -0.59 -10.96 16 10 C 0.69 14.66 8.45 -86.91 -0.73 13.93 16 11 O -0.45 -11.90 12.43 5.30 0.07 -11.83 16 12 N -0.67 -13.67 5.34 -15.78 -0.08 -13.76 16 13 C 0.39 9.62 7.43 -154.99 -1.15 8.47 16 14 C -0.36 -8.10 9.96 -38.89 -0.39 -8.49 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 17 C 0.27 7.76 6.55 -85.00 -0.56 7.20 16 18 C -0.43 -11.87 9.14 -37.73 -0.34 -12.21 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 20 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 21 N -0.65 -18.42 8.99 55.55 0.50 -17.92 16 22 Si 0.90 19.59 29.56 -169.99 -5.02 14.56 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 N -0.47 -13.54 5.73 -10.26 -0.06 -13.59 16 27 C 0.16 2.30 6.22 -3.06 -0.02 2.28 16 28 H 0.04 0.32 6.42 -51.93 -0.33 -0.01 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.30 6.69 -51.93 -0.35 -0.05 16 31 H 0.41 1.68 9.10 45.56 0.41 2.09 16 32 H 0.10 1.11 7.22 -51.93 -0.38 0.74 16 33 H 0.09 0.69 6.52 -51.93 -0.34 0.35 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.77 7.22 -51.93 -0.38 0.39 16 36 H 0.39 6.31 7.15 -40.82 -0.29 6.02 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 41 H 0.08 1.26 7.81 -51.93 -0.41 0.85 16 42 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -36.34 351.68 -8.38 -44.72 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.13 Total: 8.84 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -3.04 Total: 10.68 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.23 Total: -56.23 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.26 Total: -27.87 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.34 -8.38 -44.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571084378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.587 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds