Wall clock time and date at job start Tue Mar 31 2020 19:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99817 * 2 1 4 4 C 1.50700 * 110.78062 * 305.84741 * 3 2 1 5 5 O 1.20821 * 120.00007 * 140.39226 * 4 3 2 6 6 O 1.34229 * 119.99889 * 320.38919 * 4 3 2 7 7 C 1.55161 * 110.71743 * 69.08556 * 3 2 1 8 8 C 1.55130 * 101.48600 * 82.69877 * 7 3 2 9 9 N 1.47417 * 104.72478 * 37.29056 * 8 7 3 10 10 C 1.34779 * 125.64795 * 155.81972 * 9 8 7 11 11 O 1.21578 * 119.99774 * 179.69709 * 10 9 8 12 12 N 1.34779 * 119.99780 * 359.96566 * 10 9 8 13 13 C 1.39244 * 119.99642 * 174.78635 * 12 10 9 14 14 C 1.39690 * 119.57525 * 185.49986 * 13 12 10 15 15 C 1.38643 * 119.49738 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.66874 * 0.02562 * 15 14 13 17 17 C 1.40563 * 119.13054 * 359.97438 * 16 15 14 18 18 C 1.41339 * 119.78394 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00365 * 0.02562 * 18 17 16 20 20 C 1.40027 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.30745 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47068 * 60.00085 * 22 20 18 24 24 H 1.48505 * 109.47591 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47338 * 300.00602 * 22 20 18 26 26 N 1.31905 * 119.57641 * 5.23493 * 13 12 10 27 27 C 1.47027 * 108.70540 * 335.55469 * 9 8 7 28 28 H 1.08999 * 109.47053 * 55.22076 * 1 2 3 29 29 H 1.09006 * 109.46918 * 175.21685 * 1 2 3 30 30 H 1.08996 * 109.47229 * 295.21397 * 1 2 3 31 31 H 0.96696 * 116.99821 * 180.02562 * 6 4 3 32 32 H 1.09000 * 111.00255 * 200.93647 * 7 3 2 33 33 H 1.08996 * 111.00335 * 324.78507 * 7 3 2 34 34 H 1.09003 * 110.49314 * 278.44954 * 8 7 3 35 35 H 1.09002 * 110.34434 * 156.05828 * 8 7 3 36 36 H 0.96992 * 120.00172 * 354.78819 * 12 10 9 37 37 H 1.07994 * 120.24892 * 0.02751 * 14 13 12 38 38 H 1.07997 * 120.66188 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.43106 * 179.97438 * 16 15 14 40 40 H 0.97003 * 120.00045 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.88156 * 120.69996 * 27 9 8 42 42 H 1.08992 * 109.88208 * 241.86789 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4738 2.1296 -1.1421 5 8 1.2244 3.3002 -0.9774 6 8 1.2733 1.5630 -2.3423 7 6 1.7601 2.0177 1.3557 8 6 2.9014 1.4314 2.2277 9 7 4.0516 1.3179 1.3126 10 6 5.3485 1.3025 1.6792 11 8 6.2175 1.1988 0.8353 12 7 5.6817 1.3965 2.9818 13 6 7.0129 1.2717 3.3706 14 6 7.3356 1.2549 4.7296 15 6 8.6616 1.1311 5.1149 16 6 9.6312 1.0277 4.1333 17 6 9.2427 1.0509 2.7826 18 6 10.2217 0.9468 1.7686 19 1 11.2644 0.8495 2.0325 20 6 9.8397 0.9689 0.4216 21 7 8.5773 1.0862 0.1020 22 14 11.1336 0.8321 -0.9187 23 1 11.8625 -0.4535 -0.7735 24 1 10.4755 0.8811 -2.2490 25 1 12.0916 1.9604 -0.7989 26 7 7.9525 1.1655 2.4510 27 6 3.5495 1.2178 -0.0657 28 1 -0.3633 0.5862 -0.8441 29 1 -0.3633 -1.0241 -0.0857 30 1 -0.3633 0.4378 0.9297 31 1 0.9283 2.1317 -3.0441 32 1 1.8581 3.0984 1.2531 33 1 0.7843 1.7522 1.7622 34 1 2.6230 0.4496 2.6108 35 1 3.1358 2.1078 3.0497 36 1 4.9942 1.5511 3.6483 37 1 6.5580 1.3378 5.4745 38 1 8.9322 1.1156 6.1603 39 1 10.6728 0.9305 4.4014 40 1 8.3127 1.1019 -0.8311 41 1 3.9424 2.0400 -0.6639 42 1 3.8483 0.2642 -0.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571084378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:13 Heat of formation + Delta-G solvation = -102.578770 kcal Electronic energy + Delta-G solvation = -29483.085232 eV Core-core repulsion = 25236.350254 eV Total energy + Delta-G solvation = -4246.734978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25932 -41.13962 -39.92407 -39.05838 -37.52915 -36.91617 -35.92383 -34.85777 -32.39380 -32.08910 -30.79024 -30.40246 -27.57080 -27.46644 -25.97227 -24.28772 -23.47885 -22.96448 -21.36216 -20.78425 -19.83036 -19.62801 -18.79527 -18.62258 -17.96170 -17.21852 -16.78785 -16.49216 -16.38941 -16.24019 -15.96631 -15.69952 -15.58431 -15.47527 -14.91329 -14.63957 -14.44026 -14.19094 -13.83501 -13.71362 -13.64426 -13.01283 -12.97388 -12.85469 -12.84662 -12.71685 -12.67674 -12.54832 -12.29962 -12.20225 -11.77839 -11.76571 -11.51462 -10.96729 -10.86490 -10.84660 -9.88403 -9.61239 -9.11299 -8.78290 -8.00905 -6.39595 0.77264 0.98049 1.30084 1.39878 1.42507 1.51796 1.54867 1.82066 2.27865 2.37275 2.50027 3.00480 3.04185 3.12073 3.31017 3.94160 3.96009 4.08793 4.18942 4.32608 4.37512 4.38044 4.44096 4.47825 4.57567 4.67409 4.74481 4.83779 4.87079 4.97709 4.98929 5.07154 5.26283 5.29016 5.33759 5.68238 5.84219 5.85721 5.93933 6.01135 6.26416 6.41115 6.76942 6.83611 7.04580 7.11866 7.90833 8.38715 8.59780 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.003523 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.374689 B = 7944.749255 C = 9485.491983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.361 6.361 3 C 0.122 3.878 4 C 0.478 3.522 5 O -0.522 6.522 6 O -0.500 6.500 7 C -0.133 4.133 8 C 0.100 3.900 9 N -0.640 5.640 10 C 0.680 3.320 11 O -0.511 6.511 12 N -0.655 5.655 13 C 0.364 3.636 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.330 4.330 17 C 0.238 3.762 18 C -0.467 4.467 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.688 5.688 22 Si 0.973 3.027 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.260 1.260 26 N -0.509 5.509 27 C 0.153 3.847 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.430 0.570 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.416 0.584 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.268 0.732 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.002 0.156 -0.279 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.280 6.280 3 C 0.080 3.920 4 C 0.319 3.681 5 O -0.411 6.411 6 O -0.313 6.313 7 C -0.171 4.171 8 C -0.022 4.022 9 N -0.383 5.383 10 C 0.380 3.620 11 O -0.378 6.378 12 N -0.306 5.306 13 C 0.124 3.876 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.498 4.498 19 H 0.105 0.895 20 C -0.215 4.215 21 N -0.307 5.307 22 Si 0.794 3.206 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.184 1.184 26 N -0.229 5.229 27 C 0.028 3.972 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.293 0.707 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.254 0.746 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.481 -0.027 -1.671 20.550 hybrid contribution 0.154 0.607 -0.072 0.630 sum -20.328 0.580 -1.743 20.410 Atomic orbital electron populations 1.23220 0.78464 1.05172 1.01444 1.88122 1.22299 1.23101 1.94468 1.22208 0.93408 0.84474 0.91941 1.23678 0.73831 0.86325 0.84221 1.90744 1.48144 1.18207 1.83981 1.84611 1.77457 1.47944 1.21320 1.23391 1.01101 1.01522 0.91074 1.22561 0.84086 1.02306 0.93255 1.47553 1.03736 1.79283 1.07770 1.16111 0.81823 0.80125 0.83957 1.91391 1.45841 1.51176 1.49388 1.42324 1.06616 1.74735 1.06952 1.18830 0.85135 0.93605 0.90003 1.20902 0.97658 1.25088 0.93156 1.21034 0.92076 0.93823 0.98740 1.21812 0.99217 1.20196 0.94033 1.18862 0.89426 0.88657 0.91811 1.19884 0.94262 1.44520 0.91160 0.89543 1.27047 0.97976 0.94541 1.01940 1.70551 1.16478 1.25037 1.18645 0.85412 0.78583 0.79907 0.76672 1.18388 1.20067 1.18388 1.68632 0.99890 1.21205 1.33124 1.21299 0.88935 1.02558 0.84366 0.93464 0.86913 0.91360 0.70727 0.88307 0.85447 0.89441 0.88442 0.74571 0.84854 0.84276 0.87674 0.92109 0.91585 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.45 113.37 1.18 1.33 16 2 O -0.36 -7.34 10.29 -139.42 -1.43 -8.78 16 3 C 0.12 2.65 0.86 -10.35 -0.01 2.64 16 4 C 0.48 10.04 5.77 71.24 0.41 10.45 16 5 O -0.52 -13.03 16.47 21.98 0.36 -12.67 16 6 O -0.50 -8.06 12.59 -47.32 -0.60 -8.66 16 7 C -0.13 -2.29 5.92 32.06 0.19 -2.10 16 8 C 0.10 2.03 6.62 86.93 0.58 2.61 16 9 N -0.64 -20.63 3.32 -829.32 -2.76 -23.38 16 10 C 0.68 29.72 8.45 179.05 1.51 31.23 16 11 O -0.51 -28.31 12.43 -3.96 -0.05 -28.36 16 12 N -0.66 -26.51 5.34 -322.11 -1.72 -28.23 16 13 C 0.36 18.09 7.43 133.26 0.99 19.08 16 14 C -0.34 -14.71 9.96 22.72 0.23 -14.49 16 15 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 16 C -0.33 -16.88 9.83 22.87 0.22 -16.65 16 17 C 0.24 14.06 6.55 40.19 0.26 14.33 16 18 C -0.47 -27.28 9.14 23.47 0.21 -27.07 16 19 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 20 C 0.01 0.59 5.50 85.29 0.47 1.06 16 21 N -0.69 -41.22 8.99 21.84 0.20 -41.02 16 22 Si 0.97 41.94 29.56 68.60 2.03 43.97 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 N -0.51 -30.18 5.73 -186.36 -1.07 -31.24 16 27 C 0.15 4.61 6.22 86.73 0.54 5.15 16 28 H 0.05 0.55 6.42 -2.39 -0.02 0.54 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 30 H 0.07 0.57 6.69 -2.39 -0.02 0.55 16 31 H 0.43 2.84 9.10 -74.06 -0.67 2.17 16 32 H 0.10 1.89 7.22 -2.39 -0.02 1.87 16 33 H 0.13 1.35 6.52 -2.39 -0.02 1.33 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.62 7.22 -2.39 -0.02 1.60 16 36 H 0.42 12.40 7.15 -92.71 -0.66 11.74 16 37 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 41 H 0.07 2.16 7.81 -2.39 -0.02 2.15 16 42 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 Total: -1.00 -84.25 351.68 1.74 -82.50 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.24 Total: 29.51 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 7.02 Total: 26.36 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -5.35 Total: -123.88 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -1.72 Total: -58.46 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -84.25 1.74 -82.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571084378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.076 kcal (2) G-P(sol) polarization free energy of solvation -84.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds