Wall clock time and date at job start Tue Mar 31 2020 19:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00039 * 2 1 4 4 C 1.50701 * 110.30241 * 64.22956 * 3 2 1 5 5 O 1.20821 * 119.99979 * 212.47187 * 4 3 2 6 6 O 1.34224 * 120.00085 * 32.74631 * 4 3 2 7 7 C 1.54280 * 110.34026 * 302.05719 * 3 2 1 8 8 C 1.54396 * 104.95672 * 241.01974 * 7 3 2 9 9 N 1.48150 * 104.61771 * 23.86929 * 8 7 3 10 10 C 1.34778 * 127.83932 * 140.41383 * 9 8 7 11 11 O 1.21567 * 119.99691 * 180.02562 * 10 9 8 12 12 N 1.34772 * 119.99885 * 0.02562 * 10 9 8 13 13 C 1.39246 * 120.00021 * 184.95823 * 12 10 9 14 14 C 1.39688 * 119.57375 * 174.56668 * 13 12 10 15 15 C 1.38651 * 119.48728 * 179.79217 * 14 13 12 16 16 C 1.38343 * 118.67610 * 0.47996 * 15 14 13 17 17 C 1.40573 * 119.13230 * 359.75099 * 16 15 14 18 18 C 1.41331 * 119.78927 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.40028 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.30743 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00319 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47303 * 89.99654 * 22 20 18 24 24 H 1.48501 * 109.47403 * 209.99582 * 22 20 18 25 25 H 1.48501 * 109.46968 * 329.99755 * 22 20 18 26 26 N 1.31907 * 119.57386 * 354.84868 * 13 12 10 27 27 C 1.48152 * 104.32008 * 320.41341 * 9 8 7 28 28 H 1.08997 * 109.47446 * 65.26104 * 1 2 3 29 29 H 1.09009 * 109.47181 * 185.26557 * 1 2 3 30 30 H 1.09001 * 109.47172 * 305.25620 * 1 2 3 31 31 H 0.96703 * 117.00245 * 179.72856 * 6 4 3 32 32 H 1.09002 * 110.34459 * 359.88556 * 7 3 2 33 33 H 1.09001 * 110.34429 * 122.04712 * 7 3 2 34 34 H 1.09000 * 110.40220 * 142.64883 * 8 7 3 35 35 H 1.08996 * 110.40594 * 264.96595 * 8 7 3 36 36 H 0.97004 * 120.00121 * 4.95913 * 12 10 9 37 37 H 1.07994 * 120.25331 * 0.02562 * 14 13 12 38 38 H 1.08009 * 120.65859 * 180.20914 * 15 14 13 39 39 H 1.08000 * 120.43726 * 179.76950 * 16 15 14 40 40 H 0.97000 * 120.00006 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.40380 * 280.80023 * 27 9 8 42 42 H 1.08998 * 110.40205 * 158.36969 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6615 2.0331 1.2728 5 8 1.5180 3.2328 1.2630 6 8 1.5158 1.3492 2.4185 7 6 1.5269 2.1077 -1.2260 8 6 2.8098 2.4299 -2.0224 9 7 3.7750 1.3820 -1.6162 10 6 4.6631 0.7302 -2.3927 11 8 5.3930 -0.1115 -1.9063 12 7 4.7419 1.0116 -3.7084 13 6 5.5849 0.2679 -4.5301 14 6 5.5755 0.4903 -5.9092 15 6 6.4187 -0.2482 -6.7253 16 6 7.2419 -1.1964 -6.1446 17 6 7.2014 -1.3767 -4.7511 18 6 8.0367 -2.3411 -4.1432 19 1 8.7037 -2.9365 -4.7490 20 6 7.9996 -2.5247 -2.7555 21 7 7.1925 -1.8036 -2.0221 22 14 9.1031 -3.7999 -1.9522 23 1 10.3983 -3.1729 -1.5849 24 1 8.4436 -4.3259 -0.7301 25 1 9.3449 -4.9147 -2.9031 26 7 6.3778 -0.6414 -3.9970 27 6 3.5426 1.2132 -0.1628 28 1 -0.3634 0.4300 -0.9333 29 1 -0.3634 -1.0234 0.0943 30 1 -0.3633 0.5932 0.8392 31 1 1.2959 1.8598 3.2097 32 1 0.8477 1.5053 -1.8293 33 1 1.0357 3.0272 -0.9076 34 1 2.6163 2.3738 -3.0936 35 1 3.1844 3.4182 -1.7558 36 1 4.2115 1.7322 -4.0828 37 1 4.9194 1.2344 -6.3359 38 1 6.4294 -0.0894 -7.7936 39 1 7.9071 -1.7902 -6.7539 40 1 7.1665 -1.9310 -1.0609 41 1 4.0329 2.0106 0.3956 42 1 3.9021 0.2391 0.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571084379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:17 Heat of formation + Delta-G solvation = -73.672404 kcal Electronic energy + Delta-G solvation = -29597.839244 eV Core-core repulsion = 25352.357740 eV Total energy + Delta-G solvation = -4245.481504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29135 -39.62245 -38.56935 -37.55477 -36.63566 -35.76719 -34.07870 -32.97851 -30.97180 -30.23053 -29.65754 -28.76698 -26.65216 -25.63461 -24.72228 -23.44052 -21.76908 -21.14049 -20.25108 -19.24151 -18.83944 -18.17518 -17.69229 -17.13549 -16.44576 -16.07042 -15.44399 -15.14177 -15.02841 -14.78367 -14.72924 -14.44759 -14.23734 -13.84497 -13.66136 -13.30159 -13.05632 -12.77574 -12.48464 -12.24891 -11.95943 -11.93870 -11.86306 -11.76533 -11.71024 -11.35841 -11.11847 -10.92228 -10.90162 -10.61165 -10.42457 -10.02930 -9.89330 -9.69228 -9.15850 -8.99856 -8.35983 -7.92229 -7.19701 -6.92678 -6.07314 -4.35232 1.70565 2.47191 2.86879 2.95729 3.15516 3.21539 3.23797 3.31089 3.35066 4.04899 4.11008 4.11585 4.30899 4.51833 4.76525 4.88078 4.94996 4.99232 5.06135 5.12720 5.38476 5.40461 5.46343 5.52130 5.70363 5.78332 6.06043 6.08944 6.10411 6.22882 6.52157 6.70563 6.73808 6.82384 6.88284 7.25324 7.39204 7.51971 7.64534 7.75411 7.84671 8.19194 8.30261 8.62815 8.82032 9.09703 9.53844 10.29847 10.54009 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.003632 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.063467 B = 7707.137095 C = 9121.660979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.344 6.344 3 C 0.114 3.886 4 C 0.469 3.531 5 O -0.506 6.506 6 O -0.500 6.500 7 C -0.154 4.154 8 C 0.104 3.896 9 N -0.645 5.645 10 C 0.692 3.308 11 O -0.451 6.451 12 N -0.669 5.669 13 C 0.387 3.613 14 C -0.358 4.358 15 C -0.035 4.035 16 C -0.306 4.306 17 C 0.272 3.728 18 C -0.424 4.424 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.649 5.649 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.472 5.472 27 C 0.151 3.849 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.408 0.592 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.272 0.728 41 H 0.082 0.918 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 8.320 6.967 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.071 3.929 4 C 0.310 3.690 5 O -0.393 6.393 6 O -0.311 6.311 7 C -0.192 4.192 8 C -0.020 4.020 9 N -0.389 5.389 10 C 0.393 3.607 11 O -0.313 6.313 12 N -0.317 5.317 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.059 4.059 16 C -0.329 4.329 17 C 0.147 3.853 18 C -0.455 4.455 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.268 5.268 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.188 1.188 26 N -0.191 5.191 27 C 0.026 3.974 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.506 7.362 8.085 17.377 hybrid contribution -0.446 0.733 -0.193 0.879 sum -13.952 8.095 7.891 17.957 Atomic orbital electron populations 1.22920 0.80799 1.03635 1.00044 1.88194 1.19943 1.23860 1.94140 1.22449 0.97709 0.84281 0.88492 1.24091 0.72564 0.86443 0.85908 1.90724 1.46331 1.15925 1.86349 1.84675 1.81760 1.45386 1.19257 1.23230 0.99476 1.01371 0.95134 1.22226 0.87804 0.92355 0.99609 1.48259 1.40154 1.42377 1.08131 1.15823 0.81121 0.82384 0.81387 1.91409 1.39359 1.30028 1.70547 1.42508 1.45814 1.36789 1.06594 1.18317 0.90047 0.91206 0.85699 1.20406 1.13091 1.12608 0.92274 1.20536 0.94166 0.94291 0.96955 1.21617 1.08219 1.06604 0.96504 1.18372 0.89306 0.90203 0.87453 1.19582 1.18114 1.15678 0.92113 0.89975 1.26186 0.96101 0.96867 0.98145 1.70326 1.23139 1.27223 1.06065 0.86537 0.80687 0.81540 0.79312 1.19715 1.20314 1.18797 1.68668 1.07833 1.07310 1.35287 1.21747 0.87873 1.04872 0.82903 0.93304 0.88617 0.94071 0.73361 0.88786 0.88219 0.90089 0.90804 0.77183 0.89188 0.88614 0.88574 0.91569 0.89965 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.35 101.05 1.05 1.25 16 2 O -0.34 -4.47 10.16 -48.79 -0.50 -4.97 16 3 C 0.11 1.36 1.07 -90.38 -0.10 1.26 16 4 C 0.47 5.11 5.97 36.01 0.22 5.33 16 5 O -0.51 -6.26 16.38 -18.75 -0.31 -6.56 16 6 O -0.50 -4.42 12.81 -44.33 -0.57 -4.99 16 7 C -0.15 -1.55 5.77 -25.33 -0.15 -1.70 16 8 C 0.10 1.17 6.88 -2.40 -0.02 1.15 16 9 N -0.65 -10.29 3.32 -175.01 -0.58 -10.87 16 10 C 0.69 14.72 8.53 -86.92 -0.74 13.98 16 11 O -0.45 -11.81 12.37 5.31 0.07 -11.74 16 12 N -0.67 -13.63 5.35 -15.79 -0.08 -13.72 16 13 C 0.39 9.60 7.43 -154.99 -1.15 8.45 16 14 C -0.36 -8.10 9.96 -38.89 -0.39 -8.49 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 17 C 0.27 7.73 6.55 -85.00 -0.56 7.18 16 18 C -0.42 -11.83 9.14 -37.74 -0.34 -12.18 16 19 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 20 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 21 N -0.65 -18.35 8.98 55.55 0.50 -17.85 16 22 Si 0.89 19.56 29.56 -169.99 -5.02 14.54 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 26 N -0.47 -13.50 5.74 -10.26 -0.06 -13.55 16 27 C 0.15 2.16 6.33 -2.41 -0.02 2.15 16 28 H 0.05 0.39 6.47 -51.93 -0.34 0.05 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.04 0.33 6.92 -51.93 -0.36 -0.02 16 31 H 0.41 1.64 9.10 45.56 0.41 2.06 16 32 H 0.09 0.88 6.35 -51.93 -0.33 0.55 16 33 H 0.10 0.91 6.79 -51.93 -0.35 0.56 16 34 H 0.08 0.79 6.93 -51.93 -0.36 0.43 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.39 6.28 7.14 -40.82 -0.29 5.99 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 41 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 42 H 0.11 1.83 7.82 -51.93 -0.41 1.42 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -36.31 351.41 -8.42 -44.73 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.09 Total: 9.27 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -3.07 Total: 10.42 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.22 Total: -55.99 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.31 Total: -28.26 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.31 -8.42 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571084379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.944 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds