Wall clock time and date at job start Tue Mar 31 2020 19:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00039 * 2 1 4 4 C 1.50701 * 110.30241 * 64.22956 * 3 2 1 5 5 O 1.20821 * 119.99979 * 212.47187 * 4 3 2 6 6 O 1.34224 * 120.00085 * 32.74631 * 4 3 2 7 7 C 1.54280 * 110.34026 * 302.05719 * 3 2 1 8 8 C 1.54396 * 104.95672 * 241.01974 * 7 3 2 9 9 N 1.48150 * 104.61771 * 23.86929 * 8 7 3 10 10 C 1.34778 * 127.83932 * 140.41383 * 9 8 7 11 11 O 1.21567 * 119.99691 * 180.02562 * 10 9 8 12 12 N 1.34772 * 119.99885 * 0.02562 * 10 9 8 13 13 C 1.39246 * 120.00021 * 184.95823 * 12 10 9 14 14 C 1.39688 * 119.57375 * 174.56668 * 13 12 10 15 15 C 1.38651 * 119.48728 * 179.79217 * 14 13 12 16 16 C 1.38343 * 118.67610 * 0.47996 * 15 14 13 17 17 C 1.40573 * 119.13230 * 359.75099 * 16 15 14 18 18 C 1.41331 * 119.78927 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.40028 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.30743 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00319 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47303 * 89.99654 * 22 20 18 24 24 H 1.48501 * 109.47403 * 209.99582 * 22 20 18 25 25 H 1.48501 * 109.46968 * 329.99755 * 22 20 18 26 26 N 1.31907 * 119.57386 * 354.84868 * 13 12 10 27 27 C 1.48152 * 104.32008 * 320.41341 * 9 8 7 28 28 H 1.08997 * 109.47446 * 65.26104 * 1 2 3 29 29 H 1.09009 * 109.47181 * 185.26557 * 1 2 3 30 30 H 1.09001 * 109.47172 * 305.25620 * 1 2 3 31 31 H 0.96703 * 117.00245 * 179.72856 * 6 4 3 32 32 H 1.09002 * 110.34459 * 359.88556 * 7 3 2 33 33 H 1.09001 * 110.34429 * 122.04712 * 7 3 2 34 34 H 1.09000 * 110.40220 * 142.64883 * 8 7 3 35 35 H 1.08996 * 110.40594 * 264.96595 * 8 7 3 36 36 H 0.97004 * 120.00121 * 4.95913 * 12 10 9 37 37 H 1.07994 * 120.25331 * 0.02562 * 14 13 12 38 38 H 1.08009 * 120.65859 * 180.20914 * 15 14 13 39 39 H 1.08000 * 120.43726 * 179.76950 * 16 15 14 40 40 H 0.97000 * 120.00006 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.40380 * 280.80023 * 27 9 8 42 42 H 1.08998 * 110.40205 * 158.36969 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6615 2.0331 1.2728 5 8 1.5180 3.2328 1.2630 6 8 1.5158 1.3492 2.4185 7 6 1.5269 2.1077 -1.2260 8 6 2.8098 2.4299 -2.0224 9 7 3.7750 1.3820 -1.6162 10 6 4.6631 0.7302 -2.3927 11 8 5.3930 -0.1115 -1.9063 12 7 4.7419 1.0116 -3.7084 13 6 5.5849 0.2679 -4.5301 14 6 5.5755 0.4903 -5.9092 15 6 6.4187 -0.2482 -6.7253 16 6 7.2419 -1.1964 -6.1446 17 6 7.2014 -1.3767 -4.7511 18 6 8.0367 -2.3411 -4.1432 19 1 8.7037 -2.9365 -4.7490 20 6 7.9996 -2.5247 -2.7555 21 7 7.1925 -1.8036 -2.0221 22 14 9.1031 -3.7999 -1.9522 23 1 10.3983 -3.1729 -1.5849 24 1 8.4436 -4.3259 -0.7301 25 1 9.3449 -4.9147 -2.9031 26 7 6.3778 -0.6414 -3.9970 27 6 3.5426 1.2132 -0.1628 28 1 -0.3634 0.4300 -0.9333 29 1 -0.3634 -1.0234 0.0943 30 1 -0.3633 0.5932 0.8392 31 1 1.2959 1.8598 3.2097 32 1 0.8477 1.5053 -1.8293 33 1 1.0357 3.0272 -0.9076 34 1 2.6163 2.3738 -3.0936 35 1 3.1844 3.4182 -1.7558 36 1 4.2115 1.7322 -4.0828 37 1 4.9194 1.2344 -6.3359 38 1 6.4294 -0.0894 -7.7936 39 1 7.9071 -1.7902 -6.7539 40 1 7.1665 -1.9310 -1.0609 41 1 4.0329 2.0106 0.3956 42 1 3.9021 0.2391 0.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571084379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:16 Heat of formation + Delta-G solvation = -99.714240 kcal Electronic energy + Delta-G solvation = -29598.968503 eV Core-core repulsion = 25352.357740 eV Total energy + Delta-G solvation = -4246.610763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22440 -41.08044 -39.87619 -39.02981 -37.54704 -36.88252 -35.91033 -34.84304 -32.33445 -32.04520 -30.77559 -30.36994 -27.54677 -27.38755 -26.01066 -24.40451 -23.52901 -22.96425 -21.16120 -20.78280 -19.82486 -19.67765 -18.77690 -18.49734 -17.96227 -17.32376 -16.56909 -16.47750 -16.25337 -16.14566 -16.07061 -15.60992 -15.60442 -15.48842 -15.12725 -14.64129 -14.49683 -14.13710 -13.86924 -13.67560 -13.33785 -13.22142 -12.87614 -12.79570 -12.70204 -12.66263 -12.55206 -12.52131 -12.29417 -12.18376 -11.80673 -11.74873 -11.52158 -10.95477 -10.86451 -10.81280 -9.88277 -9.68713 -9.10691 -8.78200 -8.00335 -6.38964 0.83382 0.98216 1.30305 1.40582 1.42890 1.53019 1.55337 1.87614 2.28417 2.42430 2.50980 3.03072 3.04404 3.23421 3.37826 4.01544 4.07313 4.08369 4.09634 4.28420 4.34665 4.37432 4.42232 4.52937 4.58690 4.67355 4.75051 4.79082 4.85911 4.92926 4.99181 5.07286 5.22673 5.29134 5.38101 5.68668 5.85540 5.91945 5.94636 6.03064 6.28036 6.41818 6.83449 6.84462 7.06136 7.13178 7.92830 8.39343 8.60401 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.003632 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.063467 B = 7707.137095 C = 9121.660979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.374 6.374 3 C 0.115 3.885 4 C 0.480 3.520 5 O -0.519 6.519 6 O -0.501 6.501 7 C -0.144 4.144 8 C 0.099 3.901 9 N -0.643 5.643 10 C 0.686 3.314 11 O -0.509 6.509 12 N -0.656 5.656 13 C 0.364 3.636 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.330 4.330 17 C 0.238 3.762 18 C -0.466 4.466 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.686 5.686 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.255 1.255 26 N -0.509 5.509 27 C 0.146 3.854 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.429 0.571 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.416 0.584 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.074 9.834 6.352 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.293 6.293 3 C 0.072 3.928 4 C 0.321 3.679 5 O -0.408 6.408 6 O -0.314 6.314 7 C -0.182 4.182 8 C -0.023 4.023 9 N -0.386 5.386 10 C 0.386 3.614 11 O -0.376 6.376 12 N -0.307 5.307 13 C 0.125 3.875 14 C -0.369 4.369 15 C -0.057 4.057 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.497 4.497 19 H 0.104 0.896 20 C -0.216 4.216 21 N -0.305 5.305 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.178 1.178 26 N -0.228 5.228 27 C 0.022 3.978 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.292 0.708 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.373 8.952 7.477 19.297 hybrid contribution -0.054 0.400 -0.049 0.407 sum -15.427 9.353 7.428 19.510 Atomic orbital electron populations 1.23127 0.78884 1.04624 1.01316 1.88161 1.22117 1.24571 1.94436 1.22327 0.95756 0.84560 0.90148 1.23713 0.72243 0.85912 0.86037 1.90723 1.47202 1.16281 1.86620 1.84627 1.81270 1.45744 1.19750 1.23218 0.98902 1.01949 0.94116 1.22570 0.87094 0.91542 1.01075 1.48044 1.39563 1.42512 1.08450 1.16026 0.81427 0.82211 0.81698 1.91390 1.41906 1.32642 1.71661 1.42314 1.45277 1.36834 1.06239 1.18824 0.90187 0.91125 0.87389 1.20896 1.12416 1.12254 0.91313 1.21027 0.92695 0.92758 0.99193 1.21808 1.09656 1.08137 0.95674 1.18863 0.89938 0.90876 0.89077 1.19904 1.19531 1.17075 0.93216 0.89580 1.27045 0.97366 0.98830 0.98313 1.70550 1.25042 1.29150 1.05795 0.85357 0.78443 0.78716 0.78083 1.19039 1.20029 1.17835 1.68630 1.08878 1.08587 1.36698 1.21811 0.90295 1.03615 0.82093 0.91814 0.87881 0.92956 0.70811 0.87729 0.86485 0.88238 0.88918 0.74634 0.84907 0.84320 0.87705 0.92099 0.88715 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.35 113.37 1.17 1.44 16 2 O -0.37 -9.50 10.16 -136.02 -1.38 -10.89 16 3 C 0.11 2.61 1.07 -10.64 -0.01 2.60 16 4 C 0.48 9.60 5.97 71.24 0.43 10.02 16 5 O -0.52 -11.62 16.38 21.98 0.36 -11.26 16 6 O -0.50 -8.00 12.81 -46.49 -0.60 -8.60 16 7 C -0.14 -2.52 5.77 31.50 0.18 -2.34 16 8 C 0.10 1.99 6.88 86.54 0.60 2.58 16 9 N -0.64 -20.35 3.32 -825.89 -2.74 -23.09 16 10 C 0.69 29.78 8.53 179.06 1.53 31.30 16 11 O -0.51 -28.13 12.37 -3.93 -0.05 -28.18 16 12 N -0.66 -26.38 5.35 -322.13 -1.72 -28.10 16 13 C 0.36 18.05 7.43 133.26 0.99 19.04 16 14 C -0.34 -14.71 9.96 22.72 0.23 -14.49 16 15 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 16 C -0.33 -16.86 9.83 22.86 0.22 -16.64 16 17 C 0.24 14.03 6.55 40.19 0.26 14.30 16 18 C -0.47 -27.19 9.14 23.47 0.21 -26.97 16 19 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 20 C 0.01 0.56 5.50 85.29 0.47 1.03 16 21 N -0.69 -41.04 8.98 21.84 0.20 -40.84 16 22 Si 0.97 41.94 29.56 68.60 2.03 43.96 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 26 N -0.51 -30.05 5.74 -186.36 -1.07 -31.12 16 27 C 0.15 4.25 6.33 86.53 0.55 4.80 16 28 H 0.06 0.85 6.47 -2.39 -0.02 0.84 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.05 0.74 6.92 -2.39 -0.02 0.72 16 31 H 0.43 2.54 9.10 -74.06 -0.67 1.86 16 32 H 0.10 1.63 6.35 -2.39 -0.02 1.62 16 33 H 0.12 1.72 6.79 -2.39 -0.02 1.70 16 34 H 0.10 1.62 6.93 -2.39 -0.02 1.60 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.42 12.31 7.14 -92.71 -0.66 11.65 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 40 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 41 H 0.09 2.45 7.85 -2.39 -0.02 2.43 16 42 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 Total: -1.00 -83.84 351.41 1.85 -82.00 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.23 Total: 30.63 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 7.05 Total: 25.48 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.34 Total: -123.15 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.67 Total: -58.92 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -83.84 1.85 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571084379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.717 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds