Wall clock time and date at job start Tue Mar 31 2020 18:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99459 * 2 1 4 4 C 1.53006 * 109.47357 * 269.72424 * 3 2 1 5 5 H 1.08999 * 109.47182 * 59.99949 * 4 3 2 6 6 O 1.42908 * 109.46932 * 300.00365 * 4 3 2 7 7 C 1.53000 * 109.47427 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47014 * 185.00052 * 7 4 3 9 9 C 1.36935 * 119.99495 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00611 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99606 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99963 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00064 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46947 * 89.99774 * 13 11 9 15 15 H 1.48506 * 109.47087 * 209.99793 * 13 11 9 16 16 H 1.48498 * 109.46890 * 329.99912 * 13 11 9 17 17 C 1.34773 * 120.00287 * 179.72474 * 2 1 3 18 18 O 1.21615 * 120.00039 * 175.75574 * 17 2 1 19 19 C 1.47332 * 119.99708 * 355.75469 * 17 2 1 20 20 C 1.39499 * 120.30599 * 47.11770 * 19 17 2 21 21 C 1.38047 * 120.21386 * 179.97438 * 20 19 17 22 22 C 1.38370 * 120.68081 * 359.97438 * 21 20 19 23 23 C 1.38394 * 120.24871 * 0.02562 * 22 21 20 24 24 O 1.35317 * 133.76372 * 180.02562 * 23 22 21 25 25 C 1.34324 * 108.10920 * 179.26750 * 24 23 22 26 26 O 1.35100 * 124.96274 * 180.10421 * 25 24 23 27 27 N 1.30854 * 110.07959 * 0.60632 * 25 24 23 28 28 C 1.35544 * 108.77968 * 359.48150 * 27 25 24 29 29 H 1.09006 * 109.46996 * 95.06799 * 1 2 3 30 30 H 1.09001 * 109.47074 * 215.06456 * 1 2 3 31 31 H 1.08995 * 109.47363 * 335.06836 * 1 2 3 32 32 H 1.08999 * 109.47598 * 29.72767 * 3 2 1 33 33 H 1.09005 * 109.46837 * 149.72681 * 3 2 1 34 34 H 0.96701 * 113.99707 * 299.99943 * 6 4 3 35 35 H 1.09005 * 109.46261 * 304.99634 * 7 4 3 36 36 H 1.08991 * 109.47168 * 64.99368 * 7 4 3 37 37 H 0.97001 * 119.99885 * 359.97438 * 8 7 4 38 38 H 0.97008 * 120.00294 * 180.02562 * 12 11 9 39 39 H 1.07997 * 119.89546 * 359.97438 * 20 19 17 40 40 H 1.08008 * 119.65940 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.87289 * 180.02562 * 22 21 20 42 42 H 0.96695 * 114.00093 * 270.56826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4584 1.7071 -1.4425 5 1 1.5081 1.8361 -1.9606 6 8 3.2336 0.7095 -2.1106 7 6 3.2238 3.0318 -1.4425 8 7 3.3694 3.5117 -2.8190 9 6 4.0246 4.6880 -3.0683 10 1 4.4337 5.2622 -2.2502 11 6 4.1631 5.1424 -4.3726 12 7 4.7933 6.2727 -4.6123 13 14 3.4549 4.1495 -5.7877 14 1 2.0590 4.5844 -6.0477 15 1 4.2764 4.3679 -7.0054 16 1 3.4665 2.7071 -5.4348 17 6 2.1389 -1.1671 0.0056 18 8 3.3526 -1.1689 -0.0723 19 6 1.4053 -2.4408 0.1062 20 6 0.2894 -2.6758 -0.6973 21 6 -0.3962 -3.8702 -0.6019 22 6 0.0107 -4.8488 0.2876 23 6 1.1146 -4.6407 1.0961 24 8 1.7395 -5.3859 2.0369 25 6 2.7872 -4.6831 2.4982 26 8 3.6478 -5.1098 3.4482 27 7 2.8463 -3.5204 1.9007 28 6 1.8283 -3.4354 1.0098 29 1 -0.3633 -0.0908 -1.0237 30 1 -0.3633 -0.8412 0.5904 31 1 -0.3634 0.9318 0.4332 32 1 1.6062 2.0296 0.5096 33 1 3.1477 1.1397 0.5181 34 1 4.0943 0.5421 -1.7030 35 1 2.6742 3.7689 -0.8570 36 1 4.2102 2.8816 -1.0038 37 1 3.0017 2.9961 -3.5538 38 1 4.8897 6.5905 -5.5238 39 1 -0.0391 -1.9210 -1.3963 40 1 -1.2588 -4.0428 -1.2286 41 1 -0.5351 -5.7785 0.3512 42 1 3.3804 -4.8863 4.3501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571584734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:04 Heat of formation + Delta-G solvation = -44.602826 kcal Electronic energy + Delta-G solvation = -28566.559768 eV Core-core repulsion = 24322.338816 eV Total energy + Delta-G solvation = -4244.220952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.75384 -40.34644 -38.73920 -37.90926 -37.16289 -35.46475 -35.01955 -34.09249 -31.81789 -31.30030 -29.88782 -29.52144 -27.14731 -25.90641 -24.29548 -23.56765 -23.14997 -22.03039 -21.20726 -19.93828 -19.79481 -18.69571 -17.87777 -17.66843 -17.33053 -16.90440 -16.37166 -16.00499 -15.72729 -15.21382 -15.09440 -14.88403 -14.46252 -14.35979 -13.83831 -13.63875 -13.42968 -13.22712 -13.18733 -12.82985 -12.72722 -12.39467 -12.33836 -12.21074 -12.13857 -11.81935 -11.53749 -11.19747 -11.00603 -10.82468 -10.77063 -10.13801 -10.01176 -9.70435 -9.53207 -9.31952 -8.92265 -8.87268 -8.57382 -7.19209 -5.72926 -3.08122 -0.11479 0.58974 1.38198 1.83063 2.52443 2.75703 2.94701 3.19567 3.43184 3.50679 3.51977 3.88334 4.23079 4.32470 4.51708 4.56523 4.65089 4.70823 4.73508 4.88789 4.92396 5.07229 5.16105 5.26055 5.32237 5.42391 5.48129 5.52603 5.61169 5.64108 5.65279 5.70151 5.86336 5.97146 6.00020 6.36165 6.48588 6.52965 6.68263 7.03869 7.21019 8.01580 8.06542 8.16741 8.46058 9.26097 9.98506 10.18920 11.45313 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.002466 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.379265 B =11351.602744 C =11866.897891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.087 3.913 4 C 0.082 3.918 5 H 0.095 0.905 6 O -0.552 6.552 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.272 1.272 17 C 0.565 3.435 18 O -0.504 6.504 19 C -0.064 4.064 20 C -0.084 4.084 21 C -0.096 4.096 22 C -0.071 4.071 23 C 0.012 3.988 24 O -0.225 6.225 25 C 0.421 3.579 26 O -0.405 6.405 27 N -0.447 5.447 28 C 0.073 3.927 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.378 0.622 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 -25.533 17.253 34.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.021 3.979 5 H 0.113 0.887 6 O -0.358 6.358 7 C 0.001 3.999 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.198 1.198 17 C 0.352 3.648 18 O -0.379 6.379 19 C -0.068 4.068 20 C -0.104 4.104 21 C -0.114 4.114 22 C -0.090 4.090 23 C -0.038 4.038 24 O -0.119 6.119 25 C 0.172 3.828 26 O -0.213 6.213 27 N -0.190 5.190 28 C -0.041 4.041 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.199 0.801 38 H 0.069 0.931 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -15.070 -25.158 16.612 33.704 hybrid contribution -0.596 -1.018 -0.202 1.196 sum -15.665 -26.176 16.411 34.639 Atomic orbital electron populations 1.22042 0.79644 1.03466 1.01945 1.47567 1.06803 1.05711 1.73736 1.22297 0.98471 0.84213 0.98607 1.22541 0.95597 0.88338 0.91389 0.88693 1.86501 1.33577 1.58814 1.56875 1.21221 0.97464 0.92517 0.88656 1.42587 1.69350 1.25674 1.01911 1.19057 1.28120 0.96350 0.93927 0.89308 1.24664 1.00404 0.97099 0.96970 1.69709 1.47153 1.21689 1.19747 0.86540 0.78701 0.80457 0.82968 1.21169 1.21772 1.19787 1.17797 0.87127 0.82889 0.76972 1.90813 1.13136 1.86522 1.47380 1.19139 0.96542 0.94172 0.96945 1.21505 0.92756 0.98295 0.97798 1.20998 1.00486 0.92255 0.97667 1.20043 0.93486 1.01144 0.94295 1.19910 0.98073 0.90894 0.94959 1.84507 1.36595 1.44438 1.46342 1.22618 0.83530 0.83850 0.92839 1.84916 1.38676 1.79287 1.18383 1.71105 1.21766 1.15390 1.10702 1.19217 0.92842 0.94381 0.97660 0.92102 0.91097 0.90478 0.89262 0.89276 0.77363 0.94874 0.95225 0.80139 0.93086 0.83264 0.83180 0.84025 0.71782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 9.07 59.85 0.54 1.08 16 2 N -0.60 -7.07 2.83 -182.88 -0.52 -7.59 16 3 C 0.09 1.10 5.18 -4.04 -0.02 1.08 16 4 C 0.08 1.30 3.27 -26.73 -0.09 1.21 16 5 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 6 O -0.55 -10.08 12.00 -48.57 -0.58 -10.66 16 7 C 0.13 2.51 5.90 -4.04 -0.02 2.49 16 8 N -0.75 -18.53 5.35 -59.91 -0.32 -18.86 16 9 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 12 N -0.94 -30.07 13.97 55.49 0.78 -29.30 16 13 Si 0.88 22.98 27.74 -169.99 -4.71 18.27 16 14 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 16 H -0.27 -6.88 6.52 56.52 0.37 -6.52 16 17 C 0.57 8.05 6.83 -12.56 -0.09 7.96 16 18 O -0.50 -9.13 15.13 -8.07 -0.12 -9.26 16 19 C -0.06 -0.75 4.97 -104.73 -0.52 -1.27 16 20 C -0.08 -0.66 7.73 -39.18 -0.30 -0.96 16 21 C -0.10 -0.53 10.00 -39.60 -0.40 -0.93 16 22 C -0.07 -0.46 10.04 -39.48 -0.40 -0.86 16 23 C 0.01 0.12 7.41 -38.73 -0.29 -0.17 16 24 O -0.22 -2.24 10.79 -20.53 -0.22 -2.47 16 25 C 0.42 4.36 9.54 52.35 0.50 4.86 16 26 O -0.40 -2.80 13.62 -40.30 -0.55 -3.35 16 27 N -0.45 -6.05 11.36 -12.57 -0.14 -6.20 16 28 C 0.07 0.91 6.90 -84.44 -0.58 0.33 16 29 H 0.06 0.39 7.01 -51.93 -0.36 0.03 16 30 H 0.07 0.44 6.20 -51.93 -0.32 0.11 16 31 H 0.08 0.46 7.83 -51.93 -0.41 0.05 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.49 16 33 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 34 H 0.38 6.68 8.32 45.56 0.38 7.06 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.37 9.07 5.53 -40.82 -0.23 8.85 16 38 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 39 H 0.15 0.95 6.12 -52.49 -0.32 0.63 16 40 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.42 0.22 9.06 45.56 0.41 0.63 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -40.78 358.64 -6.26 -47.04 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.35 Total: 9.41 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.91 Total: 7.55 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.21 Total: -61.94 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.47 Total: -25.73 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.78 -6.26 -47.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571584734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.434 kcal (2) G-P(sol) polarization free energy of solvation -40.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds