Wall clock time and date at job start Tue Mar 31 2020 18:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99459 * 2 1 4 4 C 1.53006 * 109.47357 * 269.72424 * 3 2 1 5 5 H 1.08999 * 109.47182 * 59.99949 * 4 3 2 6 6 O 1.42908 * 109.46932 * 300.00365 * 4 3 2 7 7 C 1.53000 * 109.47427 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47014 * 185.00052 * 7 4 3 9 9 C 1.36935 * 119.99495 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00611 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99606 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99963 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00064 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46947 * 89.99774 * 13 11 9 15 15 H 1.48506 * 109.47087 * 209.99793 * 13 11 9 16 16 H 1.48498 * 109.46890 * 329.99912 * 13 11 9 17 17 C 1.34773 * 120.00287 * 179.72474 * 2 1 3 18 18 O 1.21615 * 120.00039 * 175.75574 * 17 2 1 19 19 C 1.47332 * 119.99708 * 355.75469 * 17 2 1 20 20 C 1.39499 * 120.30599 * 47.11770 * 19 17 2 21 21 C 1.38047 * 120.21386 * 179.97438 * 20 19 17 22 22 C 1.38370 * 120.68081 * 359.97438 * 21 20 19 23 23 C 1.38394 * 120.24871 * 0.02562 * 22 21 20 24 24 O 1.35317 * 133.76372 * 180.02562 * 23 22 21 25 25 C 1.34324 * 108.10920 * 179.26750 * 24 23 22 26 26 O 1.35100 * 124.96274 * 180.10421 * 25 24 23 27 27 N 1.30854 * 110.07959 * 0.60632 * 25 24 23 28 28 C 1.35544 * 108.77968 * 359.48150 * 27 25 24 29 29 H 1.09006 * 109.46996 * 95.06799 * 1 2 3 30 30 H 1.09001 * 109.47074 * 215.06456 * 1 2 3 31 31 H 1.08995 * 109.47363 * 335.06836 * 1 2 3 32 32 H 1.08999 * 109.47598 * 29.72767 * 3 2 1 33 33 H 1.09005 * 109.46837 * 149.72681 * 3 2 1 34 34 H 0.96701 * 113.99707 * 299.99943 * 6 4 3 35 35 H 1.09005 * 109.46261 * 304.99634 * 7 4 3 36 36 H 1.08991 * 109.47168 * 64.99368 * 7 4 3 37 37 H 0.97001 * 119.99885 * 359.97438 * 8 7 4 38 38 H 0.97008 * 120.00294 * 180.02562 * 12 11 9 39 39 H 1.07997 * 119.89546 * 359.97438 * 20 19 17 40 40 H 1.08008 * 119.65940 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.87289 * 180.02562 * 22 21 20 42 42 H 0.96695 * 114.00093 * 270.56826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4584 1.7071 -1.4425 5 1 1.5081 1.8361 -1.9606 6 8 3.2336 0.7095 -2.1106 7 6 3.2238 3.0318 -1.4425 8 7 3.3694 3.5117 -2.8190 9 6 4.0246 4.6880 -3.0683 10 1 4.4337 5.2622 -2.2502 11 6 4.1631 5.1424 -4.3726 12 7 4.7933 6.2727 -4.6123 13 14 3.4549 4.1495 -5.7877 14 1 2.0590 4.5844 -6.0477 15 1 4.2764 4.3679 -7.0054 16 1 3.4665 2.7071 -5.4348 17 6 2.1389 -1.1671 0.0056 18 8 3.3526 -1.1689 -0.0723 19 6 1.4053 -2.4408 0.1062 20 6 0.2894 -2.6758 -0.6973 21 6 -0.3962 -3.8702 -0.6019 22 6 0.0107 -4.8488 0.2876 23 6 1.1146 -4.6407 1.0961 24 8 1.7395 -5.3859 2.0369 25 6 2.7872 -4.6831 2.4982 26 8 3.6478 -5.1098 3.4482 27 7 2.8463 -3.5204 1.9007 28 6 1.8283 -3.4354 1.0098 29 1 -0.3633 -0.0908 -1.0237 30 1 -0.3633 -0.8412 0.5904 31 1 -0.3634 0.9318 0.4332 32 1 1.6062 2.0296 0.5096 33 1 3.1477 1.1397 0.5181 34 1 4.0943 0.5421 -1.7030 35 1 2.6742 3.7689 -0.8570 36 1 4.2102 2.8816 -1.0038 37 1 3.0017 2.9961 -3.5538 38 1 4.8897 6.5905 -5.5238 39 1 -0.0391 -1.9210 -1.3963 40 1 -1.2588 -4.0428 -1.2286 41 1 -0.5351 -5.7785 0.3512 42 1 3.3804 -4.8863 4.3501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571584734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:03 Heat of formation + Delta-G solvation = -82.515103 kcal Electronic energy + Delta-G solvation = -28568.203768 eV Core-core repulsion = 24322.338816 eV Total energy + Delta-G solvation = -4245.864952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.44527 -41.26187 -39.42866 -38.81079 -38.21471 -36.53128 -35.95476 -35.77075 -33.50222 -32.49143 -30.83605 -30.51619 -28.09583 -27.17236 -25.13660 -24.54986 -24.05748 -23.38175 -22.66440 -20.67858 -20.50725 -19.80920 -19.37892 -18.61458 -18.06516 -17.94951 -17.41303 -16.92313 -16.64967 -16.42198 -16.22092 -16.08754 -15.66307 -15.39466 -15.14089 -14.80670 -14.63181 -14.31194 -14.05116 -13.87897 -13.80803 -13.59299 -13.34158 -13.22941 -12.95251 -12.84957 -12.81051 -12.60468 -12.43254 -12.27691 -11.94365 -11.86095 -11.76483 -11.20399 -11.01751 -10.85803 -9.95233 -9.66024 -9.50526 -9.32603 -8.05052 -5.38239 -0.75496 -0.02362 0.75710 1.13381 1.36910 1.40902 1.49236 1.65527 1.90098 2.32620 2.47218 2.50167 3.18629 3.25327 3.41336 3.63927 3.67230 3.69443 3.93447 4.00063 4.04550 4.15058 4.22814 4.25645 4.37154 4.48796 4.57356 4.67072 4.69306 4.76799 4.90307 4.90732 4.93963 5.12838 5.16092 5.21386 5.46099 5.52373 5.72053 6.14327 6.18855 6.30099 6.35841 6.73839 7.05639 7.13638 7.82067 8.01058 9.16339 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.002466 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.379265 B =11351.602744 C =11866.897891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.601 5.601 3 C 0.095 3.905 4 C 0.094 3.906 5 H 0.107 0.893 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.754 5.754 9 C -0.237 4.237 10 H 0.058 0.942 11 C -0.063 4.063 12 N -0.983 5.983 13 Si 0.957 3.043 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.261 1.261 17 C 0.558 3.442 18 O -0.561 6.561 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.079 4.079 22 C -0.058 4.058 23 C -0.004 4.004 24 O -0.225 6.225 25 C 0.428 3.572 26 O -0.406 6.406 27 N -0.500 5.500 28 C 0.042 3.958 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.377 0.623 35 H 0.049 0.951 36 H 0.021 0.979 37 H 0.367 0.633 38 H 0.259 0.741 39 H 0.167 0.833 40 H 0.198 0.802 41 H 0.177 0.823 42 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 -27.957 16.852 38.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C -0.029 4.029 4 C 0.033 3.967 5 H 0.125 0.875 6 O -0.373 6.373 7 C -0.002 4.002 8 N -0.399 5.399 9 C -0.367 4.367 10 H 0.076 0.924 11 C -0.255 4.255 12 N -0.633 5.633 13 Si 0.784 3.216 14 H -0.196 1.196 15 H -0.222 1.222 16 H -0.186 1.186 17 C 0.346 3.654 18 O -0.440 6.440 19 C -0.103 4.103 20 C -0.090 4.090 21 C -0.097 4.097 22 C -0.076 4.076 23 C -0.054 4.054 24 O -0.119 6.119 25 C 0.178 3.822 26 O -0.218 6.218 27 N -0.244 5.244 28 C -0.072 4.072 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.185 0.815 40 H 0.215 0.785 41 H 0.194 0.806 42 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges -19.040 -27.606 16.280 37.278 hybrid contribution 0.597 -0.283 0.053 0.663 sum -18.443 -27.889 16.333 37.212 Atomic orbital electron populations 1.22369 0.76749 1.05207 1.03504 1.47659 1.08549 1.04533 1.72542 1.22121 0.98802 0.85666 0.96300 1.22506 0.94796 0.85864 0.93493 0.87544 1.86466 1.33812 1.59338 1.57710 1.21441 0.97869 0.94857 0.86022 1.42608 1.68811 1.24355 1.04168 1.19061 1.27224 0.97306 0.93153 0.92415 1.25505 1.01556 0.98464 0.99965 1.69883 1.49299 1.23836 1.20308 0.85376 0.78224 0.79205 0.78797 1.19647 1.22226 1.18558 1.18354 0.86773 0.84332 0.75912 1.90767 1.15586 1.87476 1.50134 1.19140 0.98589 0.93256 0.99278 1.21815 0.91152 0.99635 0.96435 1.21537 1.00767 0.90462 0.96919 1.20628 0.91847 1.02589 0.92577 1.20392 0.99068 0.90182 0.95723 1.84498 1.36479 1.44357 1.46551 1.22657 0.83387 0.83341 0.92769 1.84879 1.38266 1.79082 1.19620 1.71020 1.23567 1.17310 1.12494 1.19505 0.93457 0.95846 0.98398 0.90437 0.89725 0.88585 0.86033 0.91144 0.77496 0.93308 0.96128 0.79989 0.93250 0.81535 0.78547 0.80564 0.68790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 9.07 127.77 1.16 1.89 16 2 N -0.60 -13.25 2.83 -850.76 -2.41 -15.65 16 3 C 0.09 2.28 5.18 86.38 0.45 2.73 16 4 C 0.09 2.85 3.27 30.60 0.10 2.95 16 5 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 6 O -0.57 -20.59 12.00 -136.23 -1.63 -22.23 16 7 C 0.13 4.78 5.90 86.38 0.51 5.29 16 8 N -0.75 -36.85 5.35 -343.46 -1.84 -38.68 16 9 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16 10 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 11 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 12 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 13 Si 0.96 47.54 27.74 68.60 1.90 49.44 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 16 H -0.26 -12.30 6.52 99.48 0.65 -11.66 16 17 C 0.56 16.01 6.83 86.64 0.59 16.60 16 18 O -0.56 -21.46 15.13 8.67 0.13 -21.33 16 19 C -0.10 -2.25 4.97 -19.94 -0.10 -2.35 16 20 C -0.07 -0.90 7.73 22.53 0.17 -0.72 16 21 C -0.08 -0.50 10.00 22.26 0.22 -0.28 16 22 C -0.06 -0.54 10.04 22.34 0.22 -0.32 16 23 C 0.00 -0.07 7.41 22.82 0.17 0.09 16 24 O -0.22 -4.36 10.79 9.27 0.10 -4.26 16 25 C 0.43 9.08 9.54 130.39 1.24 10.32 16 26 O -0.41 -5.63 13.62 -61.48 -0.84 -6.47 16 27 N -0.50 -14.24 11.36 -421.86 -4.79 -19.03 16 28 C 0.04 1.05 6.90 39.73 0.27 1.32 16 29 H 0.08 0.67 7.01 -2.38 -0.02 0.66 16 30 H 0.08 0.78 6.20 -2.39 -0.01 0.76 16 31 H 0.10 0.77 7.83 -2.39 -0.02 0.75 16 32 H 0.12 2.12 7.85 -2.39 -0.02 2.10 16 33 H 0.07 1.99 7.49 -2.38 -0.02 1.97 16 34 H 0.38 13.82 8.32 -74.06 -0.62 13.20 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.37 17.63 5.53 -92.71 -0.51 17.11 16 38 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 39 H 0.17 1.43 6.12 -2.91 -0.02 1.42 16 40 H 0.20 -0.53 8.06 -2.91 -0.02 -0.55 16 41 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.45 0.31 9.06 -74.06 -0.67 -0.36 16 Total: -1.00 -93.75 358.64 -3.45 -97.20 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.74 Total: 24.23 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 6.36 Total: 21.02 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -8.73 Total: -137.60 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -2.24 Total: -54.30 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.90 Total: 49.44 kcal Total: -93.75 -3.45 -97.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571584734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.683 kcal (2) G-P(sol) polarization free energy of solvation -93.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds