Wall clock time and date at job start Tue Mar 31 2020 18:42:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46499 * 120.00199 * 2 1
4 4 C 1.53001 * 109.47101 * 270.00602 * 3 2 1
5 5 H 1.08998 * 109.47293 * 304.99590 * 4 3 2
6 6 O 1.42902 * 109.47239 * 65.00249 * 4 3 2
7 7 C 1.53008 * 109.47159 * 184.99982 * 4 3 2
8 8 N 1.46500 * 109.47226 * 180.02562 * 7 4 3
9 9 C 1.36936 * 119.99844 * 179.72561 * 8 7 4
10 10 H 1.07996 * 119.99916 * 0.26762 * 9 8 7
11 11 C 1.38807 * 119.99796 * 180.27111 * 9 8 7
12 12 N 1.31624 * 120.00168 * 359.97438 * 11 9 8
13 13 Si 1.86802 * 119.99868 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47089 * 0.02562 * 13 11 9
15 15 H 1.48500 * 109.46948 * 120.00074 * 13 11 9
16 16 H 1.48504 * 109.46953 * 239.99799 * 13 11 9
17 17 C 1.34774 * 119.99762 * 180.02562 * 2 1 3
18 18 O 1.21616 * 119.99877 * 175.82665 * 17 2 1
19 19 C 1.47324 * 120.00370 * 355.81856 * 17 2 1
20 20 C 1.39504 * 120.30474 * 47.52674 * 19 17 2
21 21 C 1.38049 * 120.21919 * 179.97438 * 20 19 17
22 22 C 1.38366 * 120.67633 * 359.97438 * 21 20 19
23 23 C 1.38400 * 120.25022 * 0.02562 * 22 21 20
24 24 O 1.35319 * 133.76135 * 180.02562 * 23 22 21
25 25 C 1.34334 * 108.10530 * 179.27235 * 24 23 22
26 26 O 1.35095 * 124.95806 * 180.11094 * 25 24 23
27 27 N 1.30849 * 110.07731 * 0.60289 * 25 24 23
28 28 C 1.35536 * 108.78390 * 359.48518 * 27 25 24
29 29 H 1.08996 * 109.47566 * 95.15333 * 1 2 3
30 30 H 1.09001 * 109.47165 * 215.15788 * 1 2 3
31 31 H 1.09006 * 109.47221 * 335.15073 * 1 2 3
32 32 H 1.08995 * 109.47328 * 150.00627 * 3 2 1
33 33 H 1.08998 * 109.47109 * 30.00382 * 3 2 1
34 34 H 0.96700 * 114.00277 * 59.99523 * 6 4 3
35 35 H 1.09001 * 109.47017 * 59.99832 * 7 4 3
36 36 H 1.08998 * 109.46698 * 299.99973 * 7 4 3
37 37 H 0.97006 * 119.99996 * 359.97438 * 8 7 4
38 38 H 0.97002 * 119.99674 * 179.97438 * 12 11 9
39 39 H 1.08000 * 119.88711 * 0.02562 * 20 19 17
40 40 H 1.07992 * 119.66164 * 180.02562 * 21 20 19
41 41 H 1.07998 * 119.87759 * 180.02562 * 22 21 20
42 42 H 0.96700 * 114.00418 * 270.56220 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4524 1.7104 -1.4425
5 1 2.9641 0.9132 -1.9816
6 8 1.2059 1.9937 -2.0813
7 6 3.3238 2.9681 -1.4444
8 7 3.5673 3.3915 -2.8256
9 6 4.3231 4.5053 -3.0771
10 1 4.7432 5.0692 -2.2574
11 6 4.5492 4.9096 -4.3856
12 7 4.0375 4.2221 -5.3846
13 14 5.5796 6.4295 -4.7287
14 1 6.0357 7.0186 -3.4442
15 1 6.7603 6.0527 -5.5468
16 1 4.7624 7.4250 -5.4680
17 6 2.1388 -1.1672 -0.0005
18 8 3.3525 -1.1686 -0.0772
19 6 1.4051 -2.4414 0.0919
20 6 0.2951 -2.6751 -0.7201
21 6 -0.3907 -3.8700 -0.6323
22 6 0.0103 -4.8504 0.2578
23 6 1.1083 -4.6437 1.0746
24 8 1.7268 -5.3908 2.0182
25 6 2.7708 -4.6885 2.4887
26 8 3.6248 -5.1171 3.4437
27 7 2.8336 -3.5245 1.8943
28 6 1.8220 -3.4379 0.9964
29 1 -0.3634 -0.0923 -1.0234
30 1 -0.3633 -0.8402 0.5918
31 1 -0.3634 0.9326 0.4319
32 1 3.1499 1.1383 0.5137
33 1 1.6085 2.0283 0.5139
34 1 0.6954 2.6951 -1.6540
35 1 4.2746 2.7521 -0.9571
36 1 2.8121 3.7654 -0.9052
37 1 3.1902 2.8848 -3.5618
38 1 4.1953 4.5050 -6.2990
39 1 -0.0282 -1.9190 -1.4202
40 1 -1.2486 -4.0415 -1.2655
41 1 -0.5354 -5.7806 0.3154
42 1 3.3509 -4.8959 4.3444
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571584735.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:42:07
Heat of formation + Delta-G solvation = -48.254144 kcal
Electronic energy + Delta-G solvation = -28367.503919 eV
Core-core repulsion = 24123.124634 eV
Total energy + Delta-G solvation = -4244.379285 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.71178 -40.29842 -38.69387 -37.86444 -37.24108 -35.34346 -34.95681 -33.95683
-31.81895 -31.11036 -29.84047 -29.27598 -26.89522 -25.73700 -24.24841 -23.55647
-23.19009 -22.28606 -21.15714 -19.89634 -19.76306 -18.63430 -17.83055 -17.29252
-17.11142 -16.82208 -16.33336 -15.99769 -15.68879 -15.18919 -15.04655 -14.88332
-14.42247 -14.29123 -13.78524 -13.67581 -13.36096 -13.15255 -12.95944 -12.79027
-12.68221 -12.38069 -12.30068 -12.18570 -11.95646 -11.77080 -11.46407 -10.96394
-10.89475 -10.79740 -10.63052 -10.12649 -10.00762 -9.74938 -9.62078 -9.27341
-8.88100 -8.85133 -8.49632 -6.86404 -5.69993 -2.99138 -0.07250 0.63722
1.42109 1.87242 2.53906 2.81336 2.98783 3.23680 3.47107 3.52217
3.54878 3.93323 4.28222 4.37412 4.56832 4.60584 4.61321 4.75682
4.81612 4.91998 5.07899 5.17470 5.19074 5.31037 5.38088 5.52580
5.58537 5.60916 5.68540 5.73040 5.75542 5.83008 6.04387 6.05569
6.28646 6.46314 6.56473 6.60331 6.80384 7.08070 7.25651 7.74099
8.06307 8.10661 8.48356 9.59750 10.18166 10.54102 11.52561
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.020859 B = 0.002298 C = 0.002185
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1342.048514 B =12179.046629 C =12810.869936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.602 5.602
3 C 0.089 3.911
4 C 0.086 3.914
5 H 0.101 0.899
6 O -0.550 6.550
7 C 0.126 3.874
8 N -0.725 5.725
9 C -0.240 4.240
10 H 0.070 0.930
11 C -0.014 4.014
12 N -0.930 5.930
13 Si 0.907 3.093
14 H -0.281 1.281
15 H -0.291 1.291
16 H -0.292 1.292
17 C 0.557 3.443
18 O -0.508 6.508
19 C -0.065 4.065
20 C -0.083 4.083
21 C -0.095 4.095
22 C -0.071 4.071
23 C 0.012 3.988
24 O -0.225 6.225
25 C 0.421 3.579
26 O -0.405 6.405
27 N -0.448 5.448
28 C 0.073 3.927
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.073 0.927
32 H 0.094 0.906
33 H 0.082 0.918
34 H 0.366 0.634
35 H 0.027 0.973
36 H 0.019 0.981
37 H 0.389 0.611
38 H 0.254 0.746
39 H 0.152 0.848
40 H 0.151 0.849
41 H 0.142 0.858
42 H 0.421 0.579
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.341 -20.244 18.687 31.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.335 5.335
3 C -0.034 4.034
4 C 0.026 3.974
5 H 0.119 0.881
6 O -0.354 6.354
7 C -0.002 4.002
8 N -0.370 5.370
9 C -0.371 4.371
10 H 0.088 0.912
11 C -0.210 4.210
12 N -0.579 5.579
13 Si 0.738 3.262
14 H -0.206 1.206
15 H -0.219 1.219
16 H -0.219 1.219
17 C 0.344 3.656
18 O -0.383 6.383
19 C -0.069 4.069
20 C -0.103 4.103
21 C -0.113 4.113
22 C -0.090 4.090
23 C -0.038 4.038
24 O -0.119 6.119
25 C 0.171 3.829
26 O -0.213 6.213
27 N -0.190 5.190
28 C -0.041 4.041
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.092 0.908
32 H 0.112 0.888
33 H 0.101 0.899
34 H 0.212 0.788
35 H 0.045 0.955
36 H 0.037 0.963
37 H 0.223 0.777
38 H 0.064 0.936
39 H 0.169 0.831
40 H 0.169 0.831
41 H 0.160 0.840
42 H 0.282 0.718
Dipole moment (debyes) X Y Z Total
from point charges -13.566 -20.394 18.030 30.415
hybrid contribution -0.246 0.591 0.410 0.760
sum -13.812 -19.804 18.440 30.381
Atomic orbital electron populations
1.22007 0.79340 1.02948 1.02253 1.47596 1.07104 1.05531 1.73242
1.22292 0.98406 0.84040 0.98671 1.22551 0.85151 0.98188 0.91543
0.88075 1.86606 1.32330 1.59015 1.57478 1.21218 0.96417 0.92898
0.89711 1.42250 1.61963 1.31982 1.00820 1.19269 1.23691 1.02334
0.91843 0.91225 1.24762 1.01268 0.99415 0.95598 1.69699 1.49269
1.40695 0.98191 0.86114 0.79688 0.82625 0.77742 1.20585 1.21859
1.21883 1.17941 0.87179 0.83135 0.77364 1.90881 1.13080 1.86681
1.47622 1.19125 0.96677 0.94049 0.97022 1.21538 0.92650 0.98343
0.97724 1.21003 1.00468 0.92200 0.97657 1.20047 0.93574 1.01145
0.94190 1.19911 0.98201 0.90825 0.94904 1.84508 1.36986 1.44367
1.46029 1.22608 0.83643 0.83852 0.92782 1.84916 1.38882 1.79303
1.18162 1.71098 1.21832 1.15373 1.10679 1.19212 0.92928 0.94383
0.97585 0.91493 0.91511 0.90783 0.88809 0.89948 0.78761 0.95477
0.96293 0.77664 0.93591 0.83061 0.83120 0.84023 0.71819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.64 8.68 59.85 0.52 1.16 16
2 N -0.60 -7.55 2.84 -182.89 -0.52 -8.07 16
3 C 0.09 1.20 5.07 -4.04 -0.02 1.18 16
4 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16
5 H 0.10 2.05 8.14 -51.93 -0.42 1.62 16
6 O -0.55 -8.98 12.64 -35.23 -0.45 -9.43 16
7 C 0.13 2.60 5.92 -4.04 -0.02 2.58 16
8 N -0.73 -19.29 5.49 -59.91 -0.33 -19.61 16
9 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16
10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16
12 N -0.93 -29.23 13.06 55.49 0.72 -28.50 16
13 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16
14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
17 C 0.56 8.50 7.24 -12.57 -0.09 8.41 16
18 O -0.51 -10.07 16.64 5.26 0.09 -9.98 16
19 C -0.06 -0.80 4.96 -104.73 -0.52 -1.32 16
20 C -0.08 -0.70 7.75 -39.18 -0.30 -1.00 16
21 C -0.10 -0.57 10.01 -39.60 -0.40 -0.97 16
22 C -0.07 -0.49 10.04 -39.47 -0.40 -0.89 16
23 C 0.01 0.12 7.41 -38.73 -0.29 -0.17 16
24 O -0.22 -2.33 10.79 -20.56 -0.22 -2.55 16
25 C 0.42 4.54 9.54 52.34 0.50 5.04 16
26 O -0.40 -2.95 13.62 -40.29 -0.55 -3.50 16
27 N -0.45 -6.31 11.36 -12.57 -0.14 -6.46 16
28 C 0.07 0.95 6.90 -84.44 -0.58 0.37 16
29 H 0.07 0.52 7.00 -51.93 -0.36 0.16 16
30 H 0.07 0.46 6.25 -51.93 -0.32 0.13 16
31 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16
32 H 0.09 1.41 7.48 -51.93 -0.39 1.02 16
33 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16
34 H 0.37 4.69 9.05 45.56 0.41 5.10 16
35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.39 11.13 7.54 -40.82 -0.31 10.82 16
38 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16
39 H 0.15 1.07 6.16 -52.49 -0.32 0.75 16
40 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16
41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16
42 H 0.42 0.36 9.06 45.56 0.41 0.78 16
LS Contribution 364.52 15.07 5.49 5.49
Total: -1.00 -40.73 364.52 -6.22 -46.95
By element:
Atomic # 1 Polarization: 12.90 SS G_CDS: -3.36 Total: 9.54 kcal
Atomic # 6 Polarization: 10.06 SS G_CDS: -1.94 Total: 8.12 kcal
Atomic # 7 Polarization: -62.37 SS G_CDS: -0.27 Total: -62.64 kcal
Atomic # 8 Polarization: -24.33 SS G_CDS: -1.13 Total: -25.46 kcal
Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -40.73 -6.22 -46.95 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571584735.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.308 kcal
(2) G-P(sol) polarization free energy of solvation -40.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds