Wall clock time and date at job start Tue Mar 31 2020 18:41:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36940 * 119.99822 * 2 1
4 4 H 1.07996 * 120.00048 * 203.18840 * 3 2 1
5 5 C 1.38818 * 119.99921 * 23.19644 * 3 2 1
6 6 N 1.31616 * 119.99839 * 13.70920 * 5 3 2
7 7 Si 1.86801 * 119.99831 * 193.71239 * 5 3 2
8 8 H 1.48497 * 109.47014 * 0.02562 * 7 5 3
9 9 H 1.48501 * 109.46689 * 119.99856 * 7 5 3
10 10 H 1.48495 * 109.46857 * 239.99890 * 7 5 3
11 11 C 1.46496 * 120.00053 * 180.02562 * 2 1 3
12 12 C 1.53000 * 109.47627 * 89.99748 * 11 2 1
13 13 H 1.08999 * 109.46796 * 59.99470 * 12 11 2
14 14 O 1.42897 * 109.46635 * 300.00023 * 12 11 2
15 15 C 1.53000 * 109.47152 * 179.97438 * 12 11 2
16 16 N 1.46493 * 109.46919 * 184.99600 * 15 12 11
17 17 C 1.46501 * 120.00578 * 269.72598 * 16 15 12
18 18 C 1.34776 * 119.99953 * 89.99868 * 16 15 12
19 19 O 1.21287 * 120.00000 * 0.02562 * 18 16 15
20 20 C 1.50700 * 120.00151 * 179.97438 * 18 16 15
21 21 H 1.08998 * 108.58209 * 40.70693 * 20 18 16
22 22 C 1.53202 * 108.64798 * 282.70536 * 20 18 16
23 23 C 1.55359 * 106.34296 * 211.21502 * 22 20 18
24 24 S 1.83892 * 99.54402 * 37.18436 * 23 22 20
25 25 O 1.42092 * 111.46737 * 215.81820 * 24 23 22
26 26 O 1.42097 * 111.61589 * 75.80560 * 24 23 22
27 27 N 1.46455 * 108.64729 * 158.70249 * 20 18 16
28 28 H 1.09003 * 109.46937 * 275.15132 * 1 2 3
29 29 H 1.08994 * 109.47471 * 35.14874 * 1 2 3
30 30 H 1.09002 * 109.47251 * 155.15379 * 1 2 3
31 31 H 0.96996 * 119.99730 * 179.97438 * 6 5 3
32 32 H 1.09001 * 109.47088 * 329.99256 * 11 2 1
33 33 H 1.09007 * 109.46856 * 210.00013 * 11 2 1
34 34 H 0.96706 * 114.00139 * 299.99924 * 14 12 11
35 35 H 1.08994 * 109.47058 * 64.99856 * 15 12 11
36 36 H 1.09006 * 109.46905 * 304.99944 * 15 12 11
37 37 H 1.08997 * 109.47368 * 89.99756 * 17 16 15
38 38 H 1.08995 * 109.47225 * 210.00320 * 17 16 15
39 39 H 1.09005 * 109.46388 * 330.00274 * 17 16 15
40 40 H 1.08990 * 110.10198 * 330.53433 * 22 20 18
41 41 H 1.08999 * 110.09661 * 92.14766 * 22 20 18
42 42 H 1.09003 * 111.49512 * 279.58282 * 23 22 20
43 43 H 1.08993 * 111.32862 * 154.72457 * 23 22 20
44 44 H 0.97003 * 126.07747 * 302.79326 * 27 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1860 0.0000
4 1 3.1642 1.2238 -0.3683
5 6 1.5397 2.3395 0.4735
6 7 0.4225 2.2571 1.1644
7 14 2.3045 4.0088 0.1301
8 1 3.5482 3.8301 -0.6615
9 1 1.3458 4.8441 -0.6370
10 1 2.6272 4.6792 1.4152
11 6 2.1975 -1.2687 -0.0006
12 6 2.4525 -1.7099 -1.4432
13 1 3.0415 -0.9499 -1.9568
14 8 1.2039 -1.8805 -2.1168
15 6 3.2181 -3.0345 -1.4437
16 7 3.5664 -3.3967 -2.8197
17 6 2.6490 -4.2152 -3.6164
18 6 4.7333 -2.9815 -3.3511
19 8 5.4953 -2.3084 -2.6898
20 6 5.0919 -3.3545 -4.7664
21 1 4.1980 -3.2713 -5.3847
22 6 5.5658 -4.8113 -4.7840
23 6 6.6140 -4.9163 -5.9259
24 16 7.4372 -3.2830 -5.7351
25 8 7.8162 -2.7416 -6.9930
26 8 8.3130 -3.2657 -4.6162
27 7 6.0931 -2.4071 -5.2611
28 1 -0.3633 0.0923 1.0235
29 1 -0.3634 0.8402 -0.5916
30 1 -0.3634 -0.9326 -0.4318
31 1 -0.0035 3.0631 1.4956
32 1 1.6085 -2.0285 0.5130
33 1 3.1500 -1.1385 0.5134
34 1 0.6267 -2.5433 -1.7135
35 1 2.5936 -3.8152 -1.0095
36 1 4.1288 -2.9280 -0.8543
37 1 1.9582 -3.5669 -4.1553
38 1 3.2192 -4.8109 -4.3292
39 1 2.0870 -4.8770 -2.9573
40 1 6.0239 -5.0677 -3.8289
41 1 4.7262 -5.4759 -4.9878
42 1 6.1350 -5.0082 -6.9006
43 1 7.3112 -5.7354 -5.7499
44 1 5.9942 -1.4431 -5.3063
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571608580.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:41:42
Heat of formation + Delta-G solvation = -105.628992 kcal
Electronic energy + Delta-G solvation = -28173.963910 eV
Core-core repulsion = 24062.540616 eV
Total energy + Delta-G solvation = -4111.423294 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.139 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.51581 -37.85096 -37.33302 -36.60103 -36.13206 -35.46152 -34.53700 -32.23809
-31.40886 -30.07896 -27.72596 -27.02372 -25.79163 -25.15280 -23.05388 -21.95216
-20.60937 -19.95686 -19.61165 -18.05026 -17.89166 -16.88111 -16.81857 -16.27520
-16.11766 -15.83214 -15.17297 -15.02011 -14.85623 -14.70421 -14.27092 -14.12635
-13.91139 -13.57906 -13.23572 -13.09542 -12.89971 -12.71194 -12.59425 -12.39165
-12.32742 -12.25009 -11.88443 -11.80020 -11.48115 -11.12425 -10.96411 -10.84814
-10.68489 -10.56998 -10.43247 -10.35552 -10.04886 -9.84557 -9.79280 -9.44254
-8.68006 -8.38942 -6.64558 -5.67386 -3.13766 -0.12956 2.12693 2.45279
2.84410 3.20608 3.41193 3.42138 3.49372 3.53068 3.76274 3.97916
4.13395 4.42187 4.53912 4.64686 4.72405 4.84193 4.88938 4.92767
5.05225 5.12014 5.20891 5.28354 5.33780 5.47540 5.57064 5.78740
5.88684 5.91200 6.01429 6.41696 6.61808 6.73431 6.75419 6.83730
7.23089 7.45008 7.76254 7.86943 8.04700 8.14522 8.44904 9.28958
9.91800 10.40099 11.36727
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.016392 B = 0.002959 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1707.739183 B = 9460.609329 C =10658.174494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.170 3.830
2 N -0.592 5.592
3 C -0.253 4.253
4 H 0.067 0.933
5 C 0.002 3.998
6 N -0.907 5.907
7 Si 0.903 3.097
8 H -0.278 1.278
9 H -0.290 1.290
10 H -0.290 1.290
11 C 0.126 3.874
12 C 0.070 3.930
13 H 0.096 0.904
14 O -0.549 6.549
15 C 0.083 3.917
16 N -0.605 5.605
17 C 0.073 3.927
18 C 0.496 3.504
19 O -0.510 6.510
20 C 0.098 3.902
21 H 0.109 0.891
22 C -0.120 4.120
23 C -0.591 4.591
24 S 2.572 3.428
25 O -0.957 6.957
26 O -0.940 6.940
27 N -1.076 6.076
28 H 0.026 0.974
29 H 0.037 0.963
30 H 0.000 1.000
31 H 0.251 0.749
32 H 0.038 0.962
33 H 0.056 0.944
34 H 0.357 0.643
35 H 0.077 0.923
36 H 0.091 0.909
37 H 0.067 0.933
38 H 0.066 0.934
39 H 0.073 0.927
40 H 0.103 0.897
41 H 0.121 0.879
42 H 0.146 0.854
43 H 0.145 0.855
44 H 0.441 0.559
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.822 -22.131 -14.737 27.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.314 5.314
3 C -0.383 4.383
4 H 0.084 0.916
5 C -0.196 4.196
6 N -0.553 5.553
7 Si 0.733 3.267
8 H -0.203 1.203
9 H -0.216 1.216
10 H -0.217 1.217
11 C -0.003 4.003
12 C 0.007 3.993
13 H 0.114 0.886
14 O -0.352 6.352
15 C -0.040 4.040
16 N -0.339 5.339
17 C -0.070 4.070
18 C 0.280 3.720
19 O -0.384 6.384
20 C -0.015 4.015
21 H 0.126 0.874
22 C -0.160 4.160
23 C -0.722 4.722
24 S 2.665 3.335
25 O -0.947 6.947
26 O -0.929 6.929
27 N -0.842 5.842
28 H 0.044 0.956
29 H 0.056 0.944
30 H 0.018 0.982
31 H 0.061 0.939
32 H 0.056 0.944
33 H 0.074 0.926
34 H 0.202 0.798
35 H 0.095 0.905
36 H 0.109 0.891
37 H 0.085 0.915
38 H 0.085 0.915
39 H 0.092 0.908
40 H 0.121 0.879
41 H 0.139 0.861
42 H 0.164 0.836
43 H 0.163 0.837
44 H 0.282 0.718
Dipole moment (debyes) X Y Z Total
from point charges 7.363 -20.880 -14.809 26.637
hybrid contribution -0.727 0.570 0.272 0.963
sum 6.636 -20.311 -14.537 25.844
Atomic orbital electron populations
1.20730 0.82418 0.95560 0.98776 1.43703 1.01859 1.00187 1.85602
1.19225 0.98315 0.85721 1.35044 0.91566 1.24990 0.97965 0.98493
0.98157 1.70083 1.20107 1.27033 1.38039 0.86206 0.78602 0.84375
0.77547 1.20272 1.21638 1.21723 1.21282 0.97012 0.89472 0.92541
1.23275 0.84139 0.94316 0.97566 0.88561 1.86638 1.29168 1.63261
1.56173 1.22416 1.01503 0.98348 0.81754 1.47777 1.18735 1.52550
1.14811 1.21963 0.93883 0.94963 0.96196 1.20783 0.81553 0.80902
0.88729 1.90797 1.49532 1.36892 1.61154 1.21156 0.95690 0.89620
0.95000 0.87369 1.22390 1.00781 0.93569 0.99231 1.30755 1.11655
1.22774 1.06984 1.06473 0.73996 0.78153 0.74914 1.93623 1.81557
1.75914 1.43583 1.93697 1.62447 1.85147 1.51580 1.54734 1.32561
1.16601 1.80268 0.95554 0.94425 0.98155 0.93896 0.94403 0.92587
0.79781 0.90469 0.89061 0.91485 0.91524 0.90826 0.87894 0.86071
0.83583 0.83694 0.71788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 4.20 8.66 59.85 0.52 4.72 16
2 N -0.59 -15.02 2.84 -181.12 -0.51 -15.53 16
3 C -0.25 -7.22 9.65 -15.06 -0.15 -7.36 16
4 H 0.07 1.89 7.87 -52.49 -0.41 1.48 16
5 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16
6 N -0.91 -27.10 10.76 55.49 0.60 -26.51 16
7 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16
8 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
11 C 0.13 2.49 5.34 -4.04 -0.02 2.47 16
12 C 0.07 1.18 3.48 -26.73 -0.09 1.09 16
13 H 0.10 2.03 8.14 -51.93 -0.42 1.60 16
14 O -0.55 -8.82 11.72 -35.23 -0.41 -9.24 16
15 C 0.08 1.05 5.11 -4.05 -0.02 1.02 16
16 N -0.60 -6.51 2.84 -181.58 -0.51 -7.02 16
17 C 0.07 0.46 9.54 59.85 0.57 1.03 16
18 C 0.50 6.22 6.68 -10.99 -0.07 6.15 16
19 O -0.51 -8.97 16.11 5.55 0.09 -8.88 16
20 C 0.10 0.80 2.82 -69.00 -0.19 0.61 16
21 H 0.11 0.61 7.21 -51.93 -0.37 0.23 16
22 C -0.12 -0.57 5.48 -25.38 -0.14 -0.71 16
23 C -0.59 -2.28 7.65 38.41 0.29 -1.98 16
24 S 2.57 23.88 6.47 -107.50 -0.70 23.18 16
25 O -0.96 -11.66 18.14 -57.40 -1.04 -12.71 16
26 O -0.94 -13.02 18.14 -57.40 -1.04 -14.06 16
27 N -1.08 -10.47 6.14 -5.82 -0.04 -10.50 16
28 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16
29 H 0.04 1.02 7.37 -51.93 -0.38 0.64 16
30 H 0.00 0.00 7.00 -51.93 -0.36 -0.37 16
31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
32 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16
33 H 0.06 1.15 8.04 -51.92 -0.42 0.73 16
34 H 0.36 4.39 8.79 45.56 0.40 4.79 16
35 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16
36 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
38 H 0.07 0.22 4.62 -51.93 -0.24 -0.02 16
39 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16
40 H 0.10 0.57 7.82 -51.93 -0.41 0.17 16
41 H 0.12 0.17 6.47 -51.93 -0.34 -0.17 16
42 H 0.15 0.24 8.14 -51.93 -0.42 -0.19 16
43 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16
44 H 0.44 4.36 8.96 -40.36 -0.36 3.99 16
LS Contribution 367.19 15.07 5.53 5.53
Total: -1.00 -41.66 367.19 -8.18 -49.84
By element:
Atomic # 1 Polarization: 6.86 SS G_CDS: -5.72 Total: 1.14 kcal
Atomic # 6 Polarization: 6.41 SS G_CDS: 0.61 Total: 7.01 kcal
Atomic # 7 Polarization: -59.09 SS G_CDS: -0.47 Total: -59.56 kcal
Atomic # 8 Polarization: -42.47 SS G_CDS: -2.41 Total: -44.88 kcal
Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal
Atomic # 16 Polarization: 23.88 SS G_CDS: -0.70 Total: 23.18 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -41.66 -8.18 -49.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571608580.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.788 kcal
(2) G-P(sol) polarization free energy of solvation -41.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.447 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds