Wall clock time and date at job start Tue Mar 31 2020 18:41:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36940 * 119.99822 * 2 1
4 4 H 1.07996 * 120.00048 * 203.18840 * 3 2 1
5 5 C 1.38818 * 119.99921 * 23.19644 * 3 2 1
6 6 N 1.31616 * 119.99839 * 13.70920 * 5 3 2
7 7 Si 1.86801 * 119.99831 * 193.71239 * 5 3 2
8 8 H 1.48497 * 109.47014 * 0.02562 * 7 5 3
9 9 H 1.48501 * 109.46689 * 119.99856 * 7 5 3
10 10 H 1.48495 * 109.46857 * 239.99890 * 7 5 3
11 11 C 1.46496 * 120.00053 * 180.02562 * 2 1 3
12 12 C 1.53000 * 109.47627 * 89.99748 * 11 2 1
13 13 H 1.08999 * 109.46796 * 59.99470 * 12 11 2
14 14 O 1.42897 * 109.46635 * 300.00023 * 12 11 2
15 15 C 1.53000 * 109.47152 * 179.97438 * 12 11 2
16 16 N 1.46493 * 109.46919 * 184.99600 * 15 12 11
17 17 C 1.46501 * 120.00578 * 269.72598 * 16 15 12
18 18 C 1.34776 * 119.99953 * 89.99868 * 16 15 12
19 19 O 1.21287 * 120.00000 * 0.02562 * 18 16 15
20 20 C 1.50700 * 120.00151 * 179.97438 * 18 16 15
21 21 H 1.08998 * 108.58209 * 40.70693 * 20 18 16
22 22 C 1.53202 * 108.64798 * 282.70536 * 20 18 16
23 23 C 1.55359 * 106.34296 * 211.21502 * 22 20 18
24 24 S 1.83892 * 99.54402 * 37.18436 * 23 22 20
25 25 O 1.42092 * 111.46737 * 215.81820 * 24 23 22
26 26 O 1.42097 * 111.61589 * 75.80560 * 24 23 22
27 27 N 1.46455 * 108.64729 * 158.70249 * 20 18 16
28 28 H 1.09003 * 109.46937 * 275.15132 * 1 2 3
29 29 H 1.08994 * 109.47471 * 35.14874 * 1 2 3
30 30 H 1.09002 * 109.47251 * 155.15379 * 1 2 3
31 31 H 0.96996 * 119.99730 * 179.97438 * 6 5 3
32 32 H 1.09001 * 109.47088 * 329.99256 * 11 2 1
33 33 H 1.09007 * 109.46856 * 210.00013 * 11 2 1
34 34 H 0.96706 * 114.00139 * 299.99924 * 14 12 11
35 35 H 1.08994 * 109.47058 * 64.99856 * 15 12 11
36 36 H 1.09006 * 109.46905 * 304.99944 * 15 12 11
37 37 H 1.08997 * 109.47368 * 89.99756 * 17 16 15
38 38 H 1.08995 * 109.47225 * 210.00320 * 17 16 15
39 39 H 1.09005 * 109.46388 * 330.00274 * 17 16 15
40 40 H 1.08990 * 110.10198 * 330.53433 * 22 20 18
41 41 H 1.08999 * 110.09661 * 92.14766 * 22 20 18
42 42 H 1.09003 * 111.49512 * 279.58282 * 23 22 20
43 43 H 1.08993 * 111.32862 * 154.72457 * 23 22 20
44 44 H 0.97003 * 126.07747 * 302.79326 * 27 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1860 0.0000
4 1 3.1642 1.2238 -0.3683
5 6 1.5397 2.3395 0.4735
6 7 0.4225 2.2571 1.1644
7 14 2.3045 4.0088 0.1301
8 1 3.5482 3.8301 -0.6615
9 1 1.3458 4.8441 -0.6370
10 1 2.6272 4.6792 1.4152
11 6 2.1975 -1.2687 -0.0006
12 6 2.4525 -1.7099 -1.4432
13 1 3.0415 -0.9499 -1.9568
14 8 1.2039 -1.8805 -2.1168
15 6 3.2181 -3.0345 -1.4437
16 7 3.5664 -3.3967 -2.8197
17 6 2.6490 -4.2152 -3.6164
18 6 4.7333 -2.9815 -3.3511
19 8 5.4953 -2.3084 -2.6898
20 6 5.0919 -3.3545 -4.7664
21 1 4.1980 -3.2713 -5.3847
22 6 5.5658 -4.8113 -4.7840
23 6 6.6140 -4.9163 -5.9259
24 16 7.4372 -3.2830 -5.7351
25 8 7.8162 -2.7416 -6.9930
26 8 8.3130 -3.2657 -4.6162
27 7 6.0931 -2.4071 -5.2611
28 1 -0.3633 0.0923 1.0235
29 1 -0.3634 0.8402 -0.5916
30 1 -0.3634 -0.9326 -0.4318
31 1 -0.0035 3.0631 1.4956
32 1 1.6085 -2.0285 0.5130
33 1 3.1500 -1.1385 0.5134
34 1 0.6267 -2.5433 -1.7135
35 1 2.5936 -3.8152 -1.0095
36 1 4.1288 -2.9280 -0.8543
37 1 1.9582 -3.5669 -4.1553
38 1 3.2192 -4.8109 -4.3292
39 1 2.0870 -4.8770 -2.9573
40 1 6.0239 -5.0677 -3.8289
41 1 4.7262 -5.4759 -4.9878
42 1 6.1350 -5.0082 -6.9006
43 1 7.3112 -5.7354 -5.7499
44 1 5.9942 -1.4431 -5.3063
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001571608580.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:41:41
Heat of formation + Delta-G solvation = -144.577943 kcal
Electronic energy + Delta-G solvation = -28175.652863 eV
Core-core repulsion = 24062.540616 eV
Total energy + Delta-G solvation = -4113.112247 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.139 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.38527 -39.09948 -38.18670 -37.44028 -36.94632 -36.83622 -35.96282 -33.33227
-32.77830 -31.43774 -28.69672 -27.93010 -27.74385 -26.30325 -24.00511 -23.12497
-22.29230 -20.64225 -20.47392 -18.89704 -18.76470 -18.51733 -17.69108 -17.42741
-16.99938 -16.79435 -16.69765 -16.32211 -16.19639 -15.64201 -15.43268 -15.12949
-14.80685 -14.72002 -14.48267 -14.25632 -13.92623 -13.65598 -13.47575 -13.27496
-13.13013 -13.09208 -13.02514 -12.92418 -12.84836 -12.61562 -12.44229 -12.37097
-12.21565 -12.06625 -11.98846 -11.82836 -11.47862 -11.34221 -11.26942 -10.66803
-10.27241 -9.56886 -8.68841 -7.85814 -5.34323 -0.74940 1.38503 1.40090
1.40918 1.51111 1.64698 2.04569 2.46228 2.63143 2.86793 3.24248
3.28234 3.42110 3.56193 3.59377 3.74226 3.94388 4.07548 4.18701
4.23542 4.33491 4.41253 4.52235 4.53075 4.62804 4.72297 4.78847
4.85606 4.91597 4.94387 4.98717 5.15170 5.24375 5.38791 5.57012
5.58771 5.72385 5.95521 6.29931 6.41843 7.04318 7.13418 7.17055
7.87214 8.27184 9.14876
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.016392 B = 0.002959 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1707.739183 B = 9460.609329 C =10658.174494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.186 3.814
2 N -0.611 5.611
3 C -0.263 4.263
4 H 0.053 0.947
5 C -0.049 4.049
6 N -0.933 5.933
7 Si 0.961 3.039
8 H -0.277 1.277
9 H -0.287 1.287
10 H -0.286 1.286
11 C 0.121 3.879
12 C 0.093 3.907
13 H 0.043 0.957
14 O -0.557 6.557
15 C 0.092 3.908
16 N -0.601 5.601
17 C 0.062 3.938
18 C 0.484 3.516
19 O -0.578 6.578
20 C 0.095 3.905
21 H 0.144 0.856
22 C -0.123 4.123
23 C -0.534 4.534
24 S 2.547 3.453
25 O -0.999 6.999
26 O -1.004 7.004
27 N -1.087 6.087
28 H 0.001 0.999
29 H 0.002 0.998
30 H 0.044 0.956
31 H 0.249 0.751
32 H 0.072 0.928
33 H 0.039 0.961
34 H 0.379 0.621
35 H 0.121 0.879
36 H 0.068 0.932
37 H 0.060 0.940
38 H 0.106 0.894
39 H 0.097 0.903
40 H 0.094 0.906
41 H 0.175 0.825
42 H 0.187 0.813
43 H 0.178 0.822
44 H 0.434 0.566
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.265 -26.248 -16.632 31.365
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.334 5.334
3 C -0.394 4.394
4 H 0.071 0.929
5 C -0.245 4.245
6 N -0.580 5.580
7 Si 0.790 3.210
8 H -0.202 1.202
9 H -0.213 1.213
10 H -0.213 1.213
11 C -0.006 4.006
12 C 0.030 3.970
13 H 0.062 0.938
14 O -0.364 6.364
15 C -0.032 4.032
16 N -0.333 5.333
17 C -0.079 4.079
18 C 0.270 3.730
19 O -0.457 6.457
20 C -0.017 4.017
21 H 0.161 0.839
22 C -0.162 4.162
23 C -0.670 4.670
24 S 2.647 3.353
25 O -0.989 6.989
26 O -0.993 6.993
27 N -0.851 5.851
28 H 0.019 0.981
29 H 0.021 0.979
30 H 0.063 0.937
31 H 0.058 0.942
32 H 0.090 0.910
33 H 0.057 0.943
34 H 0.227 0.773
35 H 0.139 0.861
36 H 0.087 0.913
37 H 0.079 0.921
38 H 0.124 0.876
39 H 0.115 0.885
40 H 0.113 0.887
41 H 0.193 0.807
42 H 0.205 0.795
43 H 0.196 0.804
44 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges 5.812 -25.024 -16.727 30.655
hybrid contribution -0.333 1.713 0.844 1.939
sum 5.479 -23.311 -15.883 28.734
Atomic orbital electron populations
1.20475 0.82195 0.96278 0.96940 1.43928 1.02318 1.01168 1.85966
1.19399 0.98082 0.87580 1.34327 0.92883 1.25672 0.98757 1.01494
0.98550 1.70211 1.21184 1.27521 1.39085 0.85295 0.77771 0.80601
0.77352 1.20211 1.21317 1.21269 1.21527 0.96190 0.88086 0.94804
1.22644 0.84681 0.95431 0.94222 0.93830 1.86598 1.29134 1.64458
1.56177 1.22149 1.00504 0.97080 0.83455 1.47891 1.18884 1.52193
1.14325 1.22347 0.93724 0.94871 0.96924 1.21759 0.81300 0.79751
0.90208 1.90771 1.51785 1.39983 1.63126 1.21583 0.96841 0.91200
0.92096 0.83876 1.22663 1.02738 0.91580 0.99219 1.30550 1.10659
1.16793 1.08957 1.06959 0.74102 0.80941 0.73312 1.93560 1.82601
1.78488 1.44231 1.93618 1.65235 1.87080 1.53391 1.54807 1.33098
1.16792 1.80357 0.98053 0.97879 0.93717 0.94171 0.91003 0.94258
0.77290 0.86057 0.91325 0.92119 0.87579 0.88462 0.88713 0.80737
0.79541 0.80397 0.72725
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.19 9.21 8.66 127.77 1.11 10.31 16
2 N -0.61 -31.43 2.84 -726.93 -2.07 -33.50 16
3 C -0.26 -15.49 9.65 84.03 0.81 -14.67 16
4 H 0.05 3.19 7.87 -2.91 -0.02 3.16 16
5 C -0.05 -2.93 5.09 84.86 0.43 -2.49 16
6 N -0.93 -57.05 10.76 21.65 0.23 -56.82 16
7 Si 0.96 48.11 29.58 68.60 2.03 50.14 16
8 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16
9 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16
10 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16
11 C 0.12 4.76 5.34 86.38 0.46 5.22 16
12 C 0.09 3.10 3.48 30.59 0.11 3.21 16
13 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
14 O -0.56 -16.59 11.72 -148.98 -1.75 -18.34 16
15 C 0.09 2.16 5.11 86.38 0.44 2.60 16
16 N -0.60 -11.38 2.84 -846.77 -2.40 -13.78 16
17 C 0.06 0.46 9.54 127.77 1.22 1.68 16
18 C 0.48 11.74 6.68 87.66 0.59 12.32 16
19 O -0.58 -21.53 16.11 -3.05 -0.05 -21.58 16
20 C 0.10 1.30 2.82 44.32 0.13 1.42 16
21 H 0.14 0.94 7.21 -2.39 -0.02 0.93 16
22 C -0.12 -0.52 5.48 31.47 0.17 -0.35 16
23 C -0.53 -1.33 7.65 72.79 0.56 -0.78 16
24 S 2.55 47.18 6.47 -56.49 -0.37 46.81 16
25 O -1.00 -25.10 18.14 -127.79 -2.32 -27.42 16
26 O -1.00 -29.84 18.14 -127.79 -2.32 -32.16 16
27 N -1.09 -21.35 6.14 -172.32 -1.06 -22.40 16
28 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16
29 H 0.00 0.13 7.37 -2.39 -0.02 0.11 16
30 H 0.04 1.77 7.00 -2.39 -0.02 1.75 16
31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16
32 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16
33 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16
34 H 0.38 7.67 8.79 -74.05 -0.65 7.02 16
35 H 0.12 1.78 7.89 -2.39 -0.02 1.76 16
36 H 0.07 1.96 7.42 -2.38 -0.02 1.94 16
37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
38 H 0.11 -0.08 4.62 -2.39 -0.01 -0.09 16
39 H 0.10 0.33 7.89 -2.38 -0.02 0.31 16
40 H 0.09 0.69 7.82 -2.39 -0.02 0.67 16
41 H 0.18 -1.02 6.47 -2.39 -0.02 -1.04 16
42 H 0.19 -0.79 8.14 -2.39 -0.02 -0.81 16
43 H 0.18 -0.45 8.14 -2.39 -0.02 -0.47 16
44 H 0.43 9.44 8.96 -92.99 -0.83 8.61 16
Total: -1.00 -101.52 367.19 -4.49 -106.01
By element:
Atomic # 1 Polarization: 5.01 SS G_CDS: -0.44 Total: 4.56 kcal
Atomic # 6 Polarization: 12.46 SS G_CDS: 6.02 Total: 18.48 kcal
Atomic # 7 Polarization: -121.21 SS G_CDS: -5.29 Total: -126.50 kcal
Atomic # 8 Polarization: -93.06 SS G_CDS: -6.43 Total: -99.50 kcal
Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal
Atomic # 16 Polarization: 47.18 SS G_CDS: -0.37 Total: 46.81 kcal
Total: -101.52 -4.49 -106.01 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571608580.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.571 kcal
(2) G-P(sol) polarization free energy of solvation -101.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.091 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.487 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds