Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00114 * 2 1 4 4 H 1.07999 * 120.00020 * 202.93198 * 3 2 1 5 5 C 1.38816 * 119.99879 * 22.93703 * 3 2 1 6 6 N 1.31616 * 119.99632 * 13.10702 * 5 3 2 7 7 Si 1.86800 * 120.00024 * 193.11237 * 5 3 2 8 8 H 1.48499 * 109.46866 * 89.99636 * 7 5 3 9 9 H 1.48494 * 109.46913 * 209.99566 * 7 5 3 10 10 H 1.48502 * 109.47137 * 329.99655 * 7 5 3 11 11 C 1.46504 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47444 * 89.99179 * 11 2 1 13 13 H 1.08996 * 109.47271 * 305.00363 * 12 11 2 14 14 O 1.42903 * 109.46754 * 65.00396 * 12 11 2 15 15 C 1.52998 * 109.47205 * 185.00142 * 12 11 2 16 16 N 1.46504 * 109.47349 * 180.02562 * 15 12 11 17 17 C 1.46498 * 119.99686 * 269.99928 * 16 15 12 18 18 C 1.34770 * 119.99881 * 90.00296 * 16 15 12 19 19 O 1.21279 * 120.00381 * 359.97438 * 18 16 15 20 20 C 1.50698 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.08994 * 109.35170 * 41.73634 * 20 18 16 22 22 C 1.54066 * 109.29967 * 282.05142 * 20 18 16 23 23 C 1.56005 * 104.40058 * 194.74426 * 22 20 18 24 24 S 1.83454 * 100.56675 * 37.76057 * 23 22 20 25 25 O 1.42111 * 111.24675 * 228.61650 * 24 23 22 26 26 O 1.42090 * 111.24968 * 89.51750 * 24 23 22 27 27 N 1.47070 * 109.35537 * 161.45121 * 20 18 16 28 28 H 1.08999 * 109.46698 * 275.12292 * 1 2 3 29 29 H 1.09000 * 109.47237 * 35.11620 * 1 2 3 30 30 H 1.09004 * 109.47078 * 155.12104 * 1 2 3 31 31 H 0.97006 * 119.99535 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46592 * 329.99388 * 11 2 1 33 33 H 1.09000 * 109.46905 * 210.00226 * 11 2 1 34 34 H 0.96701 * 113.99911 * 60.00331 * 14 12 11 35 35 H 1.09006 * 109.47250 * 59.99938 * 15 12 11 36 36 H 1.09003 * 109.47143 * 300.00705 * 15 12 11 37 37 H 1.09000 * 109.47538 * 270.00011 * 17 16 15 38 38 H 1.08999 * 109.47240 * 30.00213 * 17 16 15 39 39 H 1.09005 * 109.46792 * 149.99715 * 17 16 15 40 40 H 1.08998 * 110.46761 * 313.35813 * 22 20 18 41 41 H 1.09000 * 110.46832 * 75.82488 * 22 20 18 42 42 H 1.08998 * 111.16023 * 279.97921 * 23 22 20 43 43 H 1.09000 * 111.31537 * 155.60340 * 23 22 20 44 44 H 0.96997 * 126.30018 * 329.17170 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5380 2.3406 0.4685 6 7 0.4118 2.2605 1.1450 7 14 2.3130 4.0079 0.1388 8 1 1.7940 4.5502 -1.1425 9 1 1.9730 4.9391 1.2444 10 1 3.7881 3.8597 0.0523 11 6 2.1976 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5061 -1.7542 -1.9821 14 8 3.3209 -0.7717 -2.0817 15 6 3.1060 -3.0933 -1.4455 16 7 3.3506 -3.5155 -2.8269 17 6 2.3262 -4.2683 -3.5550 18 6 4.5180 -3.2115 -3.4277 19 8 5.3659 -2.5879 -2.8251 20 6 4.7694 -3.6453 -4.8489 21 1 3.8664 -3.4898 -5.4391 22 6 5.1400 -5.1406 -4.8668 23 6 5.7400 -5.3746 -6.2877 24 16 6.6621 -3.8066 -6.5259 25 8 6.3748 -3.2274 -7.7914 26 8 7.9925 -3.9124 -6.0382 27 7 5.8659 -2.8459 -5.4158 28 1 -0.3633 0.0918 1.0236 29 1 -0.3634 0.8406 -0.5911 30 1 -0.3633 -0.9323 -0.4324 31 1 -0.0159 3.0674 1.4721 32 1 1.6085 -2.0286 0.5131 33 1 3.1500 -1.1386 0.5134 34 1 4.1836 -0.6805 -1.6546 35 1 2.4436 -3.8089 -0.9584 36 1 4.0523 -3.0490 -0.9065 37 1 2.4770 -5.3358 -3.3947 38 1 1.3388 -3.9824 -3.1925 39 1 2.4006 -4.0466 -4.6197 40 1 5.8842 -5.3581 -4.1007 41 1 4.2519 -5.7552 -4.7196 42 1 4.9532 -5.4857 -7.0337 43 1 6.4128 -6.2322 -6.2974 44 1 6.0865 -1.9295 -5.1868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571608582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = -107.735378 kcal Electronic energy + Delta-G solvation = -28171.459550 eV Core-core repulsion = 24059.944916 eV Total energy + Delta-G solvation = -4111.514634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48696 -37.70089 -37.34996 -36.57362 -36.15336 -35.52976 -34.51793 -32.14833 -31.39626 -29.94783 -27.59854 -27.16501 -25.88821 -25.09853 -23.22170 -21.92245 -20.47507 -20.05393 -19.54260 -18.13937 -17.84604 -16.85852 -16.68002 -16.33269 -16.04114 -15.89306 -15.25956 -15.05543 -14.83030 -14.55230 -14.25563 -14.09292 -13.89199 -13.49082 -13.31167 -13.22929 -12.84116 -12.70164 -12.60237 -12.44388 -12.33255 -12.27456 -11.97427 -11.89279 -11.61383 -11.05852 -11.02812 -10.82800 -10.64063 -10.60539 -10.38637 -10.24577 -9.93705 -9.88283 -9.72546 -9.55537 -8.69164 -8.39612 -6.66390 -5.65828 -3.11299 -0.15749 2.11988 2.43296 2.80059 3.19749 3.44072 3.45016 3.50866 3.53021 3.79713 3.95840 4.17041 4.32012 4.55732 4.63904 4.70858 4.89189 4.91451 4.93715 5.03085 5.11566 5.16179 5.21350 5.36079 5.46262 5.50430 5.65041 5.84730 5.92098 6.02706 6.36279 6.46543 6.67680 6.76357 6.79695 7.19422 7.37148 7.72589 7.91142 8.00667 8.37096 8.47748 9.29756 9.91970 10.39917 11.39403 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.002803 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.859052 B = 9988.250297 C =10957.668656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.239 4.239 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.125 3.875 12 C 0.071 3.929 13 H 0.085 0.915 14 O -0.542 6.542 15 C 0.080 3.920 16 N -0.604 5.604 17 C 0.070 3.930 18 C 0.520 3.480 19 O -0.514 6.514 20 C 0.094 3.906 21 H 0.108 0.892 22 C -0.120 4.120 23 C -0.597 4.597 24 S 2.579 3.421 25 O -0.955 6.955 26 O -0.954 6.954 27 N -1.081 6.081 28 H 0.031 0.969 29 H 0.040 0.960 30 H -0.006 1.006 31 H 0.250 0.750 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.369 0.631 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -22.169 -13.400 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.369 4.369 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.559 5.559 7 Si 0.736 3.264 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.008 3.992 13 H 0.103 0.897 14 O -0.346 6.346 15 C -0.043 4.043 16 N -0.338 5.338 17 C -0.074 4.074 18 C 0.305 3.695 19 O -0.389 6.389 20 C -0.018 4.018 21 H 0.125 0.875 22 C -0.159 4.159 23 C -0.727 4.727 24 S 2.672 3.328 25 O -0.944 6.944 26 O -0.943 6.943 27 N -0.848 5.848 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.215 0.785 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 5.711 -21.410 -14.015 26.219 hybrid contribution 0.042 0.848 0.641 1.064 sum 5.752 -20.562 -13.374 25.194 Atomic orbital electron populations 1.20799 0.82751 0.95200 0.99435 1.43750 1.01623 1.00491 1.85643 1.19209 0.98233 0.85340 1.34106 0.91221 1.25006 0.98045 0.98526 0.98513 1.70070 1.19719 1.26994 1.39149 0.86231 0.78809 0.84157 0.77219 1.21652 1.21971 1.20488 1.21324 0.96915 0.89441 0.92726 1.23174 0.92882 0.85528 0.97645 0.89684 1.86549 1.28874 1.62987 1.56213 1.22464 1.02421 0.98160 0.81274 1.47721 1.15782 1.55545 1.14749 1.21949 0.92564 0.95663 0.97187 1.20066 0.81969 0.79989 0.87486 1.90711 1.44502 1.38808 1.64836 1.21672 0.93312 0.91193 0.95629 0.87495 1.22707 1.04996 0.93260 0.94987 1.30924 1.15210 1.21426 1.05186 1.06147 0.74737 0.77762 0.74120 1.93647 1.85129 1.74467 1.41196 1.93642 1.34805 1.85793 1.80056 1.54989 1.44626 1.25662 1.59573 0.95025 0.94093 0.98745 0.93943 0.93989 0.93054 0.78472 0.89898 0.89607 0.92291 0.90327 0.90964 0.87961 0.86356 0.83625 0.83579 0.71587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.98 59.85 0.54 4.52 16 2 N -0.59 -14.74 2.90 -181.11 -0.53 -15.27 16 3 C -0.24 -6.65 9.21 -15.06 -0.14 -6.79 16 4 H 0.07 1.93 7.58 -52.49 -0.40 1.53 16 5 C 0.00 -0.10 5.10 -17.43 -0.09 -0.19 16 6 N -0.91 -27.06 10.71 55.49 0.59 -26.47 16 7 Si 0.91 22.71 29.57 -169.99 -5.03 17.68 16 8 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.13 2.40 5.32 -4.04 -0.02 2.37 16 12 C 0.07 1.16 3.48 -26.74 -0.09 1.07 16 13 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 14 O -0.54 -10.41 11.38 -44.00 -0.50 -10.91 16 15 C 0.08 0.95 5.15 -4.04 -0.02 0.93 16 16 N -0.60 -6.11 2.83 -181.57 -0.51 -6.62 16 17 C 0.07 0.41 9.51 59.85 0.57 0.98 16 18 C 0.52 6.02 6.42 -10.99 -0.07 5.95 16 19 O -0.51 -7.96 14.74 -3.21 -0.05 -8.00 16 20 C 0.09 0.75 2.68 -68.22 -0.18 0.57 16 21 H 0.11 0.62 6.39 -51.93 -0.33 0.28 16 22 C -0.12 -0.55 5.89 -24.57 -0.14 -0.70 16 23 C -0.60 -2.16 7.54 38.76 0.29 -1.87 16 24 S 2.58 22.49 6.48 -107.50 -0.70 21.79 16 25 O -0.96 -11.47 18.14 -57.43 -1.04 -12.51 16 26 O -0.95 -12.08 18.13 -57.43 -1.04 -13.12 16 27 N -1.08 -10.49 6.31 -5.08 -0.03 -10.52 16 28 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 29 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 30 H -0.01 -0.13 8.03 -51.93 -0.42 -0.54 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.72 8.07 -51.92 -0.42 0.30 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.37 6.82 8.45 45.56 0.38 7.21 16 35 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 37 H 0.06 0.20 7.77 -51.93 -0.40 -0.20 16 38 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 39 H 0.07 0.31 5.98 -51.93 -0.31 0.00 16 40 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.12 0.21 7.13 -51.93 -0.37 -0.16 16 42 H 0.15 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.15 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.44 4.73 8.72 -40.34 -0.35 4.38 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -40.09 367.04 -8.51 -48.59 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.84 Total: 2.99 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 0.64 Total: 6.84 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.48 Total: -58.88 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -2.63 Total: -44.54 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Atomic # 16 Polarization: 22.49 SS G_CDS: -0.70 Total: 21.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.09 -8.51 -48.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571608582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.143 kcal (2) G-P(sol) polarization free energy of solvation -40.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds