Wall clock time and date at job start Tue Mar 31 2020 18:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00114 * 2 1 4 4 H 1.07999 * 120.00020 * 202.93198 * 3 2 1 5 5 C 1.38816 * 119.99879 * 22.93703 * 3 2 1 6 6 N 1.31616 * 119.99632 * 13.10702 * 5 3 2 7 7 Si 1.86800 * 120.00024 * 193.11237 * 5 3 2 8 8 H 1.48499 * 109.46866 * 89.99636 * 7 5 3 9 9 H 1.48494 * 109.46913 * 209.99566 * 7 5 3 10 10 H 1.48502 * 109.47137 * 329.99655 * 7 5 3 11 11 C 1.46504 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47444 * 89.99179 * 11 2 1 13 13 H 1.08996 * 109.47271 * 305.00363 * 12 11 2 14 14 O 1.42903 * 109.46754 * 65.00396 * 12 11 2 15 15 C 1.52998 * 109.47205 * 185.00142 * 12 11 2 16 16 N 1.46504 * 109.47349 * 180.02562 * 15 12 11 17 17 C 1.46498 * 119.99686 * 269.99928 * 16 15 12 18 18 C 1.34770 * 119.99881 * 90.00296 * 16 15 12 19 19 O 1.21279 * 120.00381 * 359.97438 * 18 16 15 20 20 C 1.50698 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.08994 * 109.35170 * 41.73634 * 20 18 16 22 22 C 1.54066 * 109.29967 * 282.05142 * 20 18 16 23 23 C 1.56005 * 104.40058 * 194.74426 * 22 20 18 24 24 S 1.83454 * 100.56675 * 37.76057 * 23 22 20 25 25 O 1.42111 * 111.24675 * 228.61650 * 24 23 22 26 26 O 1.42090 * 111.24968 * 89.51750 * 24 23 22 27 27 N 1.47070 * 109.35537 * 161.45121 * 20 18 16 28 28 H 1.08999 * 109.46698 * 275.12292 * 1 2 3 29 29 H 1.09000 * 109.47237 * 35.11620 * 1 2 3 30 30 H 1.09004 * 109.47078 * 155.12104 * 1 2 3 31 31 H 0.97006 * 119.99535 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46592 * 329.99388 * 11 2 1 33 33 H 1.09000 * 109.46905 * 210.00226 * 11 2 1 34 34 H 0.96701 * 113.99911 * 60.00331 * 14 12 11 35 35 H 1.09006 * 109.47250 * 59.99938 * 15 12 11 36 36 H 1.09003 * 109.47143 * 300.00705 * 15 12 11 37 37 H 1.09000 * 109.47538 * 270.00011 * 17 16 15 38 38 H 1.08999 * 109.47240 * 30.00213 * 17 16 15 39 39 H 1.09005 * 109.46792 * 149.99715 * 17 16 15 40 40 H 1.08998 * 110.46761 * 313.35813 * 22 20 18 41 41 H 1.09000 * 110.46832 * 75.82488 * 22 20 18 42 42 H 1.08998 * 111.16023 * 279.97921 * 23 22 20 43 43 H 1.09000 * 111.31537 * 155.60340 * 23 22 20 44 44 H 0.96997 * 126.30018 * 329.17170 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5380 2.3406 0.4685 6 7 0.4118 2.2605 1.1450 7 14 2.3130 4.0079 0.1388 8 1 1.7940 4.5502 -1.1425 9 1 1.9730 4.9391 1.2444 10 1 3.7881 3.8597 0.0523 11 6 2.1976 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5061 -1.7542 -1.9821 14 8 3.3209 -0.7717 -2.0817 15 6 3.1060 -3.0933 -1.4455 16 7 3.3506 -3.5155 -2.8269 17 6 2.3262 -4.2683 -3.5550 18 6 4.5180 -3.2115 -3.4277 19 8 5.3659 -2.5879 -2.8251 20 6 4.7694 -3.6453 -4.8489 21 1 3.8664 -3.4898 -5.4391 22 6 5.1400 -5.1406 -4.8668 23 6 5.7400 -5.3746 -6.2877 24 16 6.6621 -3.8066 -6.5259 25 8 6.3748 -3.2274 -7.7914 26 8 7.9925 -3.9124 -6.0382 27 7 5.8659 -2.8459 -5.4158 28 1 -0.3633 0.0918 1.0236 29 1 -0.3634 0.8406 -0.5911 30 1 -0.3633 -0.9323 -0.4324 31 1 -0.0159 3.0674 1.4721 32 1 1.6085 -2.0286 0.5131 33 1 3.1500 -1.1386 0.5134 34 1 4.1836 -0.6805 -1.6546 35 1 2.4436 -3.8089 -0.9584 36 1 4.0523 -3.0490 -0.9065 37 1 2.4770 -5.3358 -3.3947 38 1 1.3388 -3.9824 -3.1925 39 1 2.4006 -4.0466 -4.6197 40 1 5.8842 -5.3581 -4.1007 41 1 4.2519 -5.7552 -4.7196 42 1 4.9532 -5.4857 -7.0337 43 1 6.4128 -6.2322 -6.2974 44 1 6.0865 -1.9295 -5.1868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571608582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:47 Heat of formation + Delta-G solvation = -143.810926 kcal Electronic energy + Delta-G solvation = -28173.023903 eV Core-core repulsion = 24059.944916 eV Total energy + Delta-G solvation = -4113.078987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29275 -38.94325 -38.12506 -37.43029 -36.93088 -36.73321 -36.01258 -33.31584 -32.66148 -31.26627 -28.57302 -27.93851 -27.79936 -26.23731 -24.05872 -23.14410 -22.09295 -20.72320 -20.31221 -18.95438 -18.69228 -18.46298 -17.53496 -17.37493 -16.96368 -16.80210 -16.70678 -16.12991 -16.11418 -15.64654 -15.29973 -15.14251 -14.87797 -14.62684 -14.40200 -14.18986 -13.87197 -13.68933 -13.36958 -13.25479 -13.20415 -13.07954 -13.01951 -12.93124 -12.82458 -12.58524 -12.50586 -12.43397 -12.23435 -12.06721 -11.87213 -11.80652 -11.52446 -11.15836 -11.03672 -10.60941 -10.34831 -9.53530 -8.66351 -7.80315 -5.26892 -0.74330 1.42616 1.44878 1.44945 1.53073 1.69180 2.06522 2.51317 2.65177 2.92154 3.31939 3.35500 3.44078 3.57234 3.66975 3.81130 3.85898 4.09858 4.21021 4.29171 4.30439 4.44545 4.53262 4.61779 4.65277 4.74346 4.77998 4.82909 4.85441 4.89748 4.96771 5.09972 5.27899 5.37079 5.54998 5.67527 5.73210 5.97297 6.36101 6.44457 6.94184 7.18877 7.21368 7.91022 8.31844 9.22023 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.002803 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.859052 B = 9988.250297 C =10957.668656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.613 5.613 3 C -0.239 4.239 4 H 0.065 0.935 5 C -0.059 4.059 6 N -0.941 5.941 7 Si 0.961 3.039 8 H -0.292 1.292 9 H -0.293 1.293 10 H -0.273 1.273 11 C 0.121 3.879 12 C 0.081 3.919 13 H 0.082 0.918 14 O -0.564 6.564 15 C 0.092 3.908 16 N -0.603 5.603 17 C 0.056 3.944 18 C 0.510 3.490 19 O -0.567 6.567 20 C 0.088 3.912 21 H 0.136 0.864 22 C -0.119 4.119 23 C -0.545 4.545 24 S 2.562 3.438 25 O -0.999 6.999 26 O -1.008 7.008 27 N -1.094 6.094 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.037 0.963 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.367 0.633 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.164 0.836 42 H 0.184 0.816 43 H 0.177 0.823 44 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -25.914 -14.620 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 C -0.370 4.370 4 H 0.082 0.918 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.791 3.209 8 H -0.219 1.219 9 H -0.220 1.220 10 H -0.198 1.198 11 C -0.006 4.006 12 C 0.018 3.982 13 H 0.100 0.900 14 O -0.369 6.369 15 C -0.032 4.032 16 N -0.335 5.335 17 C -0.085 4.085 18 C 0.297 3.703 19 O -0.445 6.445 20 C -0.023 4.023 21 H 0.153 0.847 22 C -0.159 4.159 23 C -0.681 4.681 24 S 2.662 3.338 25 O -0.989 6.989 26 O -0.997 6.997 27 N -0.860 5.860 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.214 0.786 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.182 0.818 42 H 0.202 0.798 43 H 0.195 0.805 44 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.602 -25.182 -15.275 29.810 hybrid contribution 0.328 1.874 1.035 2.166 sum 4.930 -23.308 -14.240 27.755 Atomic orbital electron populations 1.20546 0.82803 0.95916 0.97625 1.43995 1.01988 1.01617 1.85922 1.19435 0.98096 0.86835 1.32626 0.91753 1.25676 0.98923 1.01468 0.99261 1.70210 1.20947 1.27199 1.40596 0.85343 0.78296 0.80667 0.76623 1.21918 1.22003 1.19814 1.21566 0.96268 0.87791 0.94991 1.22992 0.92790 0.87537 0.94835 0.90048 1.86516 1.29118 1.64407 1.56842 1.22160 1.01951 0.96107 0.83030 1.47806 1.16309 1.55215 1.14139 1.22361 0.91123 0.97214 0.97846 1.20774 0.81742 0.79165 0.88660 1.90691 1.46346 1.41185 1.66254 1.22068 0.93943 0.93026 0.93299 0.84713 1.22920 1.06866 0.91058 0.95027 1.30717 1.15132 1.16629 1.05600 1.06437 0.74519 0.79877 0.72996 1.93585 1.85498 1.76952 1.42860 1.93572 1.38559 1.87188 1.80418 1.55075 1.45436 1.25514 1.59930 0.97554 0.97358 0.94500 0.94516 0.91255 0.93959 0.78593 0.86405 0.91000 0.88571 0.90374 0.88977 0.88612 0.81823 0.79804 0.80498 0.72903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 8.98 127.77 1.15 9.73 16 2 N -0.61 -30.40 2.90 -726.92 -2.11 -32.51 16 3 C -0.24 -13.48 9.21 84.03 0.77 -12.71 16 4 H 0.06 3.63 7.58 -2.91 -0.02 3.60 16 5 C -0.06 -3.44 5.10 84.86 0.43 -3.00 16 6 N -0.94 -57.04 10.71 21.65 0.23 -56.81 16 7 Si 0.96 47.63 29.57 68.60 2.03 49.66 16 8 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 9 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 11 C 0.12 4.49 5.32 86.38 0.46 4.95 16 12 C 0.08 2.52 3.48 30.59 0.11 2.62 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 O -0.56 -21.76 11.38 -140.60 -1.60 -23.36 16 15 C 0.09 1.95 5.15 86.38 0.44 2.39 16 16 N -0.60 -10.22 2.83 -846.75 -2.39 -12.61 16 17 C 0.06 0.36 9.51 127.77 1.21 1.58 16 18 C 0.51 10.89 6.42 87.66 0.56 11.46 16 19 O -0.57 -17.77 14.74 5.35 0.08 -17.69 16 20 C 0.09 1.15 2.68 44.50 0.12 1.27 16 21 H 0.14 0.97 6.39 -2.39 -0.02 0.96 16 22 C -0.12 -0.50 5.89 32.00 0.19 -0.31 16 23 C -0.55 -1.18 7.54 73.02 0.55 -0.63 16 24 S 2.56 43.31 6.48 -56.49 -0.37 42.94 16 25 O -1.00 -24.25 18.14 -127.76 -2.32 -26.57 16 26 O -1.01 -26.62 18.13 -127.76 -2.32 -28.94 16 27 N -1.09 -21.12 6.31 -169.99 -1.07 -22.19 16 28 H 0.01 0.33 7.34 -2.39 -0.02 0.31 16 29 H 0.01 0.42 7.34 -2.39 -0.02 0.40 16 30 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 32 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 33 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.37 14.10 8.45 -74.06 -0.63 13.48 16 35 H 0.12 1.70 8.07 -2.38 -0.02 1.68 16 36 H 0.07 1.77 7.42 -2.39 -0.02 1.76 16 37 H 0.10 -0.02 7.77 -2.39 -0.02 -0.04 16 38 H 0.08 0.58 8.07 -2.39 -0.02 0.56 16 39 H 0.09 0.25 5.98 -2.38 -0.01 0.24 16 40 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 41 H 0.16 -0.69 7.13 -2.39 -0.02 -0.71 16 42 H 0.18 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.18 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.43 10.01 8.72 -93.01 -0.81 9.20 16 Total: -1.00 -93.99 367.04 -4.24 -98.22 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -0.40 Total: 12.49 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.00 Total: 17.36 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.34 Total: -124.12 kcal Atomic # 8 Polarization: -90.40 SS G_CDS: -6.15 Total: -96.56 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: 43.31 SS G_CDS: -0.37 Total: 42.94 kcal Total: -93.99 -4.24 -98.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571608582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.586 kcal (2) G-P(sol) polarization free energy of solvation -93.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds