Wall clock time and date at job start Tue Mar 31 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99567 * 2 1 4 4 O 1.20825 * 120.00126 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99925 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47251 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47066 * 180.02562 * 6 5 3 8 8 C 1.36824 * 120.00023 * 89.99961 * 7 6 5 9 9 H 1.07991 * 120.00190 * 342.36292 * 8 7 6 10 10 C 1.39082 * 119.99763 * 162.63763 * 8 7 6 11 11 N 1.31344 * 119.99934 * 104.82961 * 10 8 7 12 12 Si 1.86803 * 120.00134 * 284.83091 * 10 8 7 13 13 H 1.48496 * 109.46968 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47111 * 119.99943 * 12 10 8 15 15 H 1.48498 * 109.46950 * 240.00065 * 12 10 8 16 16 C 1.34775 * 119.99933 * 269.99940 * 7 6 5 17 17 O 1.21595 * 120.00297 * 176.68303 * 16 7 6 18 18 C 1.47682 * 120.00058 * 356.68311 * 16 7 6 19 19 C 1.40017 * 120.97587 * 300.30343 * 18 16 7 20 20 C 1.37938 * 119.07427 * 179.97438 * 19 18 16 21 21 N 1.31939 * 121.11002 * 0.02562 * 20 19 18 22 22 C 1.31628 * 122.18304 * 359.97438 * 21 20 19 23 23 C 1.39035 * 120.78149 * 359.72777 * 22 21 20 24 24 N 1.39319 * 120.60103 * 180.28928 * 23 22 21 25 25 C 1.34770 * 120.00065 * 332.99421 * 24 23 22 26 26 C 1.50707 * 120.00052 * 185.29730 * 25 24 23 27 27 O 1.21275 * 119.99997 * 5.29317 * 25 24 23 28 28 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46896 * 299.99704 * 1 2 3 30 30 H 1.08995 * 109.47453 * 60.00421 * 1 2 3 31 31 H 1.09002 * 109.46715 * 60.00026 * 5 3 2 32 32 H 1.09001 * 109.47083 * 300.00332 * 5 3 2 33 33 H 1.09000 * 109.46626 * 60.00220 * 6 5 3 34 34 H 1.09000 * 109.46984 * 300.00427 * 6 5 3 35 35 H 0.96999 * 120.00141 * 184.92822 * 11 10 8 36 36 H 1.07997 * 120.45988 * 359.94847 * 19 18 16 37 37 H 1.07995 * 119.44402 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.61408 * 179.97438 * 22 21 20 39 39 H 0.97008 * 119.99956 * 152.99311 * 24 23 22 40 40 H 1.08993 * 109.47212 * 59.99810 * 26 25 24 41 41 H 1.08999 * 109.47036 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.46964 * 299.99738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1462 2.8541 -1.1852 9 1 5.6598 2.5444 -2.0983 10 6 7.4688 3.2834 -1.2128 11 7 8.4401 2.4098 -1.3490 12 14 7.8639 5.1025 -1.0561 13 1 6.6021 5.8727 -0.9153 14 1 8.7151 5.3228 0.1406 15 1 8.5885 5.5579 -2.2697 16 6 6.1359 2.8548 1.1669 17 8 7.3519 2.8576 1.1679 18 6 5.3965 2.8909 2.4448 19 6 4.5090 3.9343 2.7347 20 6 3.8385 3.9285 3.9401 21 7 4.0213 2.9601 4.8173 22 6 4.8439 1.9572 4.5931 23 6 5.5584 1.8753 3.4032 24 7 6.4235 0.8090 3.1674 25 6 7.0000 0.1673 4.2028 26 6 8.0262 -0.9063 3.9468 27 8 6.6932 0.4539 5.3405 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 3.6099 3.2368 0.8894 34 1 3.6106 3.2357 -0.8906 35 1 9.3642 2.6999 -1.2967 36 1 4.3521 4.7327 2.0246 37 1 3.1522 4.7302 4.1697 38 1 4.9622 1.1867 5.3406 39 1 6.6108 0.5284 2.2578 40 1 8.8673 -0.4817 3.3988 41 1 8.3776 -1.3071 4.8975 42 1 7.5762 -1.7062 3.3589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587592040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:58 Heat of formation + Delta-G solvation = -82.433843 kcal Electronic energy + Delta-G solvation = -30083.270991 eV Core-core repulsion = 25837.409563 eV Total energy + Delta-G solvation = -4245.861428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.76403 -40.34149 -39.06802 -38.11667 -36.51364 -35.05624 -34.50759 -33.12093 -31.66185 -30.87095 -30.72685 -28.54428 -27.71784 -25.65462 -24.38029 -23.32217 -22.78096 -20.70939 -20.48185 -19.92331 -17.82457 -17.65176 -17.32319 -17.07792 -16.54968 -16.50203 -15.88991 -15.68464 -14.98070 -14.89311 -14.67225 -14.36582 -14.07576 -13.74397 -13.65736 -13.45689 -13.37274 -13.18563 -12.67432 -12.59428 -12.43375 -12.33453 -12.23473 -12.21309 -11.93931 -11.56649 -11.10015 -10.89578 -10.81065 -10.78509 -10.65566 -10.39982 -10.14049 -9.72436 -9.41211 -9.07977 -8.92473 -8.45605 -7.94957 -7.79637 -7.03717 -3.65440 1.33175 1.46687 2.30478 2.70084 2.73700 3.13297 3.27268 3.39388 3.42321 3.76878 4.07133 4.21371 4.41341 4.69163 4.79838 4.91555 4.91742 5.03910 5.10444 5.20225 5.22900 5.27138 5.32383 5.36171 5.39739 5.46292 5.52782 5.62636 5.76461 5.83391 6.02972 6.06494 6.28290 6.31251 6.40452 6.45776 6.53328 7.10623 7.19060 7.54089 7.74170 7.82461 8.15213 8.36763 8.50773 8.92884 9.22812 9.91123 9.98843 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007072 B = 0.006528 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3958.558634 B = 4288.000965 C = 6312.382795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.126 4.126 6 C 0.109 3.891 7 N -0.391 5.391 8 C -0.487 4.487 9 H 0.104 0.896 10 C 0.216 3.784 11 N -0.696 5.696 12 Si 0.808 3.192 13 H -0.263 1.263 14 H -0.272 1.272 15 H -0.284 1.284 16 C 0.418 3.582 17 O -0.560 6.560 18 C -0.067 4.067 19 C -0.145 4.145 20 C 0.071 3.929 21 N -0.475 5.475 22 C 0.085 3.915 23 C 0.114 3.886 24 N -0.649 5.649 25 C 0.514 3.486 26 C -0.172 4.172 27 O -0.536 6.536 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.282 0.718 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.179 0.821 39 H 0.420 0.580 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 -6.808 2.764 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.165 4.165 6 C -0.016 4.016 7 N -0.106 5.106 8 C -0.603 4.603 9 H 0.121 0.879 10 C -0.018 4.018 11 N -0.315 5.315 12 Si 0.628 3.372 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.211 1.211 16 C 0.212 3.788 17 O -0.447 6.447 18 C -0.081 4.081 19 C -0.166 4.166 20 C -0.085 4.085 21 N -0.185 5.185 22 C -0.075 4.075 23 C 0.015 3.985 24 N -0.293 5.293 25 C 0.303 3.697 26 C -0.231 4.231 27 O -0.414 6.414 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.196 0.804 39 H 0.258 0.742 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.129 -6.509 4.211 11.233 hybrid contribution 0.603 1.038 -1.300 1.769 sum -7.526 -5.471 2.912 9.749 Atomic orbital electron populations 1.23223 0.76796 1.03400 1.02464 1.86534 1.23146 1.33912 1.84290 1.23915 0.92193 0.81141 0.71793 1.90652 1.67311 1.36230 1.45364 1.21890 0.86373 1.01964 1.06297 1.21448 0.83265 0.92783 1.04106 1.43397 1.03012 1.59024 1.05189 1.18131 0.96228 1.59793 0.86117 0.87887 1.24835 0.94043 0.97553 0.85324 1.70535 1.02159 1.37521 1.21299 0.88047 0.79542 0.91476 0.78120 1.18690 1.19665 1.21052 1.17370 0.87588 0.91720 0.82082 1.90663 1.11988 1.57814 1.84263 1.20627 0.96962 0.93223 0.97335 1.22156 0.96989 0.98746 0.98740 1.22534 0.98793 0.97181 0.89993 1.67591 1.16581 1.02037 1.32245 1.23370 0.91342 0.97337 0.95471 1.18874 0.93797 0.89176 0.96683 1.43324 1.43807 1.30772 1.11348 1.21004 0.81607 0.82742 0.84316 1.21902 0.98475 0.97461 1.05263 1.90613 1.62804 1.65701 1.22245 0.88359 0.92003 0.91969 0.86631 0.88351 0.90250 0.89475 0.90681 0.84503 0.82984 0.80424 0.74213 0.88610 0.88730 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.84 10.57 -39.26 -0.41 -5.25 16 3 C 0.47 7.04 7.96 36.01 0.29 7.33 16 4 O -0.51 -8.65 15.73 -18.75 -0.29 -8.94 16 5 C -0.13 -1.95 6.14 -27.88 -0.17 -2.12 16 6 C 0.11 1.95 4.50 -4.04 -0.02 1.93 16 7 N -0.39 -8.51 2.61 -115.95 -0.30 -8.81 16 8 C -0.49 -11.86 9.43 -15.01 -0.14 -12.00 16 9 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 10 C 0.22 5.46 3.07 -17.45 -0.05 5.41 16 11 N -0.70 -17.62 13.63 55.50 0.76 -16.86 16 12 Si 0.81 19.46 28.32 -169.99 -4.81 14.64 16 13 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.42 9.47 5.88 -12.40 -0.07 9.40 16 17 O -0.56 -14.63 13.64 5.28 0.07 -14.56 16 18 C -0.07 -1.33 4.86 -104.49 -0.51 -1.84 16 19 C -0.15 -2.56 7.75 -39.02 -0.30 -2.86 16 20 C 0.07 1.16 11.16 -17.62 -0.20 0.96 16 21 N -0.47 -8.51 10.32 -13.15 -0.14 -8.65 16 22 C 0.08 1.55 9.97 -17.34 -0.17 1.38 16 23 C 0.11 2.12 6.47 -83.28 -0.54 1.58 16 24 N -0.65 -10.85 5.09 -9.56 -0.05 -10.90 16 25 C 0.51 7.93 7.83 -10.99 -0.09 7.84 16 26 C -0.17 -1.84 10.32 36.01 0.37 -1.47 16 27 O -0.54 -9.72 14.07 5.56 0.08 -9.64 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.38 4.73 -51.93 -0.25 1.14 16 34 H 0.09 1.56 8.00 -51.93 -0.42 1.14 16 35 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.14 2.25 7.70 -52.49 -0.40 1.85 16 37 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 38 H 0.18 3.23 5.60 -52.48 -0.29 2.94 16 39 H 0.42 6.90 8.00 -40.82 -0.33 6.58 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -32.04 364.73 -5.19 -37.23 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.05 Total: 9.28 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: -0.54 Total: 16.96 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.27 Total: -45.22 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.56 Total: -38.39 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.81 Total: 14.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.04 -5.19 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587592040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.204 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds