Wall clock time and date at job start Tue Mar 31 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.47089 * 120.87617 * 269.71967 * 16 13 3 18 18 C 1.53696 * 108.27464 * 128.75423 * 17 16 13 19 19 N 1.46902 * 109.25807 * 54.08274 * 18 17 16 20 20 C 1.46898 * 111.00293 * 172.60742 * 19 18 17 21 21 C 1.50700 * 109.47158 * 294.30008 * 20 19 18 22 22 O 1.20831 * 119.99601 * 0.02562 * 21 20 19 23 23 O 1.34224 * 120.00195 * 179.97438 * 21 20 19 24 24 C 1.46904 * 111.26849 * 296.75611 * 19 18 17 25 25 C 1.47072 * 120.88731 * 89.99713 * 16 13 3 26 26 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 27 27 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 29 29 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 30 30 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 31 31 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 32 32 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 33 33 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.62771 * 248.51902 * 17 16 13 35 35 H 1.08995 * 109.63024 * 9.10347 * 17 16 13 36 36 H 1.09000 * 109.65389 * 294.08133 * 18 17 16 37 37 H 1.08992 * 109.42206 * 173.94622 * 18 17 16 38 38 H 1.08999 * 109.46962 * 54.29934 * 20 19 18 39 39 H 1.08999 * 109.47366 * 174.30034 * 20 19 18 40 40 H 0.96692 * 116.99882 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.49190 * 303.14400 * 24 19 18 42 42 H 1.08997 * 109.51790 * 183.07615 * 24 19 18 43 43 H 1.09008 * 109.62445 * 350.89956 * 25 16 13 44 44 H 1.09003 * 109.63062 * 111.47195 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 -0.4316 4.0082 3.1189 9 14 2.2076 3.6998 3.9031 10 1 2.9462 4.9208 3.4919 11 1 1.7567 3.8446 5.3105 12 1 3.1006 2.5189 3.7884 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 5.0570 2.7262 -1.2202 18 6 6.1005 1.8969 -0.4551 19 7 6.5841 0.8110 -1.3182 20 6 7.7072 0.1009 -0.6918 21 6 8.8879 1.0304 -0.5770 22 8 8.8023 2.1678 -0.9757 23 8 10.0341 0.5950 -0.0309 24 6 5.5001 -0.1186 -1.6630 25 6 4.4323 0.6249 -2.4724 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.9080 2.8919 1.1512 32 1 2.4690 1.4183 2.0480 33 1 -0.5115 4.5281 3.9339 34 1 5.5312 3.2300 -2.0625 35 1 4.6119 3.4635 -0.5522 36 1 5.6471 1.4742 0.4415 37 1 6.9364 2.5370 -0.1732 38 1 7.4138 -0.2382 0.3017 39 1 7.9799 -0.7591 -1.3034 40 1 10.7635 1.2276 0.0214 41 1 5.0550 -0.5131 -0.7496 42 1 5.9001 -0.9403 -2.2570 43 1 3.5739 -0.0276 -2.6326 44 1 4.8475 0.9307 -3.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:19 Heat of formation + Delta-G solvation = -170.897540 kcal Electronic energy + Delta-G solvation = -29152.020267 eV Core-core repulsion = 25037.766716 eV Total energy + Delta-G solvation = -4114.253551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33637 -39.63980 -38.40473 -37.77998 -37.04179 -36.87716 -35.59049 -34.60287 -32.15069 -31.71397 -30.01198 -29.10157 -26.11450 -24.89200 -24.29618 -23.38942 -22.38798 -21.61622 -19.83267 -19.10273 -18.99481 -18.72878 -18.31934 -17.59372 -17.30521 -16.99902 -16.47449 -16.09059 -15.86924 -15.82990 -15.42246 -15.23369 -15.00575 -14.71095 -14.56661 -14.41521 -13.95286 -13.79216 -13.51249 -13.44939 -13.21873 -13.15438 -13.06889 -12.91451 -12.87027 -12.74051 -12.58182 -12.31765 -12.20764 -12.15567 -12.01909 -11.88336 -11.69371 -11.48727 -11.33082 -10.75608 -10.21110 -9.79126 -9.35233 -8.25909 -6.30124 -0.43971 1.30089 1.34952 1.39499 1.46633 1.94826 2.03737 2.35853 2.52698 2.92962 3.07516 3.30230 3.63520 3.90869 4.02385 4.09418 4.17879 4.29851 4.39258 4.42779 4.44314 4.46976 4.49233 4.51277 4.67347 4.74948 4.77235 4.82304 4.90184 4.94130 4.99644 5.07080 5.10102 5.39279 5.49176 5.51980 5.58860 5.71689 5.86944 5.88658 5.97145 6.34630 6.73835 7.09358 7.31872 8.91354 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004568 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.715138 B = 6127.784486 C = 7417.095964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 N -0.993 5.993 4 C 0.238 3.762 5 C -0.534 4.534 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.937 3.063 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.227 1.227 13 S 2.787 3.213 14 O -1.002 7.002 15 O -1.011 7.011 16 N -1.005 6.005 17 C 0.128 3.872 18 C 0.043 3.957 19 N -0.536 5.536 20 C 0.063 3.937 21 C 0.479 3.521 22 O -0.537 6.537 23 O -0.515 6.515 24 C 0.048 3.952 25 C 0.118 3.882 26 H 0.030 0.970 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.265 0.735 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.427 0.573 41 H 0.054 0.946 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.826 -15.366 -6.871 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.113 3.887 5 C -0.573 4.573 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.149 1.149 13 S 2.797 3.203 14 O -0.986 6.986 15 O -0.995 6.995 16 N -0.847 5.847 17 C 0.002 3.998 18 C -0.087 4.087 19 N -0.263 5.263 20 C -0.065 4.065 21 C 0.322 3.678 22 O -0.427 6.427 23 O -0.329 6.329 24 C -0.080 4.080 25 C -0.007 4.007 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.167 0.833 40 H 0.289 0.711 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.980 -14.538 -7.870 26.711 hybrid contribution 0.091 1.014 1.576 1.876 sum 21.071 -13.524 -6.294 25.817 Atomic orbital electron populations 1.22232 0.97556 1.02317 1.01015 1.21302 0.93926 0.80562 1.03837 1.57581 1.79197 1.24180 1.22328 1.19178 0.95071 0.91674 0.82780 1.21740 0.96783 1.31747 1.07012 0.94708 1.25878 0.99043 0.94624 0.99462 1.70072 1.26944 1.35963 1.26044 0.85888 0.79863 0.80567 0.77785 1.19844 1.20711 1.14916 1.01615 0.73383 0.72491 0.72810 1.93505 1.71148 1.76259 1.57653 1.93557 1.86304 1.33493 1.86149 1.58221 1.23265 1.35103 1.68120 1.21566 0.87994 0.91253 0.99004 1.22607 0.97902 0.94389 0.93767 1.61466 1.08542 1.11947 1.44321 1.21680 0.86781 0.95216 1.02857 1.23683 0.84342 0.87199 0.72582 1.90729 1.83471 1.22196 1.46301 1.84467 1.23993 1.49679 1.74749 1.22586 0.90611 0.94448 1.00365 1.21783 0.98610 0.85084 0.95211 0.95100 0.89356 0.93746 0.88718 0.88571 0.95496 0.92626 0.92561 0.90158 0.90681 0.93727 0.89004 0.88694 0.83254 0.71147 0.92775 0.85657 0.88172 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 9.83 71.98 0.71 -5.36 16 2 C 0.13 3.92 6.09 86.38 0.53 4.44 16 3 N -0.99 -38.03 2.86 -519.85 -1.48 -39.52 16 4 C 0.24 10.61 4.19 85.63 0.36 10.97 16 5 C -0.53 -30.47 8.97 25.60 0.23 -30.24 16 6 H 0.03 2.25 7.13 -2.91 -0.02 2.23 16 7 C 0.01 0.43 5.47 84.66 0.46 0.89 16 8 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 9 Si 0.94 42.45 27.47 68.60 1.88 44.33 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 13 S 2.79 108.61 6.02 -56.49 -0.34 108.27 16 14 O -1.00 -40.47 15.89 -128.00 -2.03 -42.50 16 15 O -1.01 -49.64 15.88 -128.00 -2.03 -51.67 16 16 N -1.01 -28.40 3.38 -511.32 -1.73 -30.12 16 17 C 0.13 3.52 6.56 86.50 0.57 4.09 16 18 C 0.04 0.95 5.27 86.54 0.46 1.41 16 19 N -0.54 -9.05 4.37 -898.88 -3.93 -12.98 16 20 C 0.06 0.68 5.56 85.56 0.48 1.16 16 21 C 0.48 7.29 7.99 71.24 0.57 7.86 16 22 O -0.54 -12.65 15.09 21.95 0.33 -12.32 16 23 O -0.52 -5.11 13.42 -51.36 -0.69 -5.80 16 24 C 0.05 0.64 5.62 86.38 0.49 1.13 16 25 C 0.12 2.32 6.53 86.35 0.56 2.88 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.04 1.89 6.59 -2.39 -0.02 1.88 16 29 H 0.09 2.25 7.61 -2.39 -0.02 2.23 16 30 H 0.10 2.44 8.00 -2.39 -0.02 2.42 16 31 H 0.03 1.21 7.04 -2.39 -0.02 1.19 16 32 H 0.06 2.23 7.06 -2.39 -0.02 2.21 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.37 7.21 -2.39 -0.02 2.35 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 2.18 5.77 -2.39 -0.01 2.16 16 38 H 0.10 0.80 8.12 -2.39 -0.02 0.78 16 39 H 0.15 0.71 7.97 -2.39 -0.02 0.69 16 40 H 0.43 1.28 9.10 -74.06 -0.67 0.60 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 42 H 0.13 0.81 7.99 -2.39 -0.02 0.79 16 43 H 0.10 1.83 7.22 -2.38 -0.02 1.82 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -85.34 365.14 -4.03 -89.37 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.29 Total: 13.53 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.40 Total: -0.77 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -6.84 Total: -142.43 kcal Atomic # 8 Polarization: -107.87 SS G_CDS: -4.42 Total: -112.29 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 108.61 SS G_CDS: -0.34 Total: 108.27 kcal Total: -85.34 -4.03 -89.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.529 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds