Wall clock time and date at job start Tue Mar 31 2020 18:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99493 * 2 1 4 4 O 1.21580 * 120.00455 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99454 * 179.97438 * 3 2 1 6 6 C 1.39985 * 119.99819 * 185.51280 * 5 3 2 7 7 C 1.38999 * 119.99610 * 212.97729 * 6 5 3 8 8 C 1.38231 * 120.23565 * 180.02562 * 7 6 5 9 9 C 1.37998 * 120.22748 * 359.69999 * 8 7 6 10 10 C 1.39649 * 119.98914 * 0.58377 * 9 8 7 11 11 C 1.47740 * 120.12006 * 179.71863 * 10 9 8 12 12 O 1.21591 * 120.00017 * 220.72113 * 11 10 9 13 13 N 1.34777 * 119.99889 * 40.72584 * 11 10 9 14 14 C 1.36880 * 119.99792 * 357.96107 * 13 11 10 15 15 H 1.07995 * 119.99639 * 51.86332 * 14 13 11 16 16 C 1.39042 * 119.99886 * 231.85429 * 14 13 11 17 17 N 1.31363 * 120.00089 * 199.79723 * 16 14 13 18 18 Si 1.86806 * 119.99937 * 19.79787 * 16 14 13 19 19 H 1.48501 * 109.47189 * 94.54828 * 18 16 14 20 20 H 1.48501 * 109.47000 * 214.54565 * 18 16 14 21 21 H 1.48494 * 109.47051 * 334.54587 * 18 16 14 22 22 C 1.46499 * 120.00041 * 177.96758 * 13 11 10 23 23 C 1.53000 * 109.46932 * 275.15734 * 22 13 11 24 24 C 1.50697 * 109.47142 * 175.36915 * 23 22 13 25 25 O 1.20826 * 120.00254 * 359.97438 * 24 23 22 26 26 O 1.34227 * 119.99908 * 179.97438 * 24 23 22 27 27 C 1.38562 * 119.99341 * 33.00549 * 6 5 3 28 28 H 1.09001 * 109.47244 * 60.00487 * 1 2 3 29 29 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47348 * 300.00252 * 1 2 3 31 31 H 0.96993 * 120.00514 * 179.97438 * 2 1 3 32 32 H 0.97001 * 120.00244 * 5.51493 * 5 3 2 33 33 H 1.08001 * 119.88440 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.88403 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.00788 * 180.29907 * 9 8 7 36 36 H 0.97001 * 119.99806 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47116 * 155.15611 * 22 13 11 38 38 H 1.09000 * 109.47003 * 35.15258 * 22 13 11 39 39 H 1.09000 * 109.46777 * 295.36750 * 23 22 13 40 40 H 1.09000 * 109.47393 * 55.36688 * 23 22 13 41 41 H 0.96704 * 117.00020 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.11516 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4865 1.1673 0.0005 6 6 4.1864 2.3740 0.1170 7 6 5.4086 2.5333 -0.5255 8 6 6.1042 3.7226 -0.4134 9 6 5.5869 4.7623 0.3321 10 6 4.3626 4.6105 0.9864 11 6 3.8091 5.7196 1.7904 12 8 3.2722 5.4886 2.8566 13 7 3.8992 6.9873 1.3419 14 6 4.5403 7.2518 0.1618 15 1 4.2705 6.7099 -0.7325 16 6 5.5387 8.2184 0.1145 17 7 5.8818 8.7526 -1.0355 18 14 6.3922 8.7573 1.6863 19 1 7.6397 7.9720 1.8665 20 1 6.7251 10.2019 1.5985 21 1 5.4905 8.5266 2.8433 22 6 3.3112 8.0822 2.1176 23 6 1.8277 8.2157 1.7677 24 6 1.1968 9.2648 2.6465 25 8 1.8649 9.8458 3.4686 26 8 -0.1075 9.5538 2.5159 27 6 3.6608 3.4094 0.8732 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8399 0.0004 32 1 3.9716 0.3311 -0.0798 33 1 5.8164 1.7250 -1.1143 34 1 7.0532 3.8404 -0.9153 35 1 6.1311 5.6918 0.4133 36 1 6.5780 9.4272 -1.0685 37 1 3.8258 9.0133 1.8797 38 1 3.4159 7.8708 3.1817 39 1 1.7258 8.5079 0.7226 40 1 1.3292 7.2597 1.9280 41 1 -0.4674 10.2336 3.1021 42 1 2.7117 3.2871 1.3738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606280405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:52 Heat of formation + Delta-G solvation = -109.045290 kcal Electronic energy + Delta-G solvation = -29026.696116 eV Core-core repulsion = 24779.680729 eV Total energy + Delta-G solvation = -4247.015387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50494 -39.96671 -39.18946 -37.70974 -35.90316 -35.08132 -34.74501 -34.48022 -32.36437 -31.17304 -30.15480 -29.24840 -26.49618 -25.07243 -24.91893 -22.61305 -22.28281 -20.75244 -20.70268 -19.42620 -18.60421 -18.02700 -17.78396 -16.55157 -16.21893 -15.96199 -15.85493 -15.50282 -15.44678 -14.97144 -14.82387 -14.53730 -14.26861 -13.83369 -13.62440 -13.28657 -13.12966 -12.91258 -12.68519 -12.58759 -12.41614 -12.36323 -11.96819 -11.87219 -11.28535 -11.24520 -11.14493 -10.90115 -10.73660 -10.32320 -10.24672 -10.15500 -9.91281 -9.87572 -9.29408 -9.26950 -8.71378 -8.33107 -7.75512 -7.63831 -6.52929 -4.25697 1.60208 1.91398 2.56082 2.60286 3.11239 3.16647 3.23759 3.28369 3.35051 3.71006 4.09452 4.13316 4.39186 4.52114 4.87002 4.98759 5.34470 5.38027 5.42149 5.44479 5.60995 5.63133 5.79244 5.87653 5.96549 5.98281 6.03627 6.15008 6.25417 6.36751 6.46258 6.55107 6.61675 6.79501 6.83054 6.95801 7.03613 7.21756 7.34018 7.52723 7.86788 8.01047 8.20139 8.26060 8.52688 8.89690 9.22514 9.59160 10.55146 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004188 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.648164 B = 6683.656569 C = 8704.528352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.697 3.303 4 O -0.563 6.563 5 N -0.683 5.683 6 C 0.136 3.864 7 C -0.136 4.136 8 C -0.120 4.120 9 C -0.063 4.063 10 C -0.079 4.079 11 C 0.531 3.469 12 O -0.584 6.584 13 N -0.460 5.460 14 C -0.351 4.351 15 H 0.104 0.896 16 C 0.078 3.922 17 N -0.851 5.851 18 Si 0.851 3.149 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.248 1.248 22 C 0.127 3.873 23 C -0.127 4.127 24 C 0.486 3.514 25 O -0.521 6.521 26 O -0.520 6.520 27 C -0.077 4.077 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.402 0.598 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.276 0.724 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.403 0.597 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -14.119 -0.196 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.406 5.406 3 C 0.397 3.603 4 O -0.438 6.438 5 N -0.331 5.331 6 C 0.042 3.958 7 C -0.157 4.157 8 C -0.139 4.139 9 C -0.082 4.082 10 C -0.083 4.083 11 C 0.321 3.679 12 O -0.468 6.468 13 N -0.180 5.180 14 C -0.478 4.478 15 H 0.121 0.879 16 C -0.132 4.132 17 N -0.484 5.484 18 Si 0.675 3.325 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.172 1.172 22 C 0.004 3.996 23 C -0.165 4.165 24 C 0.328 3.672 25 O -0.409 6.409 26 O -0.332 6.332 27 C -0.099 4.099 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.237 0.763 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.260 0.740 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.177 -13.251 0.181 14.227 hybrid contribution 0.717 0.047 0.732 1.025 sum -4.460 -13.203 0.913 13.966 Atomic orbital electron populations 1.21412 0.77902 1.01867 1.02618 1.44903 1.07868 1.06910 1.80958 1.15994 0.81594 0.84527 0.78149 1.91015 1.67389 1.29836 1.55591 1.42467 1.04738 1.08661 1.77236 1.17189 0.93093 0.86313 0.99180 1.20809 0.95447 0.98750 1.00699 1.20876 1.00098 0.92520 1.00378 1.21807 0.94829 0.98660 0.92919 1.19708 0.95772 0.93668 0.99131 1.18544 0.80763 0.83761 0.84848 1.90657 1.48111 1.84806 1.23237 1.43476 1.49245 1.03686 1.21585 1.18979 1.17428 1.24640 0.86783 0.87892 1.25486 0.95832 0.95219 0.96618 1.69744 1.28856 1.24251 1.25559 0.87266 0.81282 0.78610 0.85323 1.19772 1.20514 1.17165 1.21482 0.89477 0.91804 0.96868 1.21836 0.97821 0.96767 1.00103 1.23732 0.79273 0.82132 0.82018 1.90690 1.63198 1.51217 1.35802 1.84593 1.27311 1.58654 1.62610 1.21074 1.00317 0.91683 0.96778 0.92220 0.90711 0.92153 0.77079 0.76296 0.86413 0.85729 0.83359 0.91331 0.90350 0.90599 0.86908 0.87569 0.73961 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 10.70 59.84 0.64 1.53 16 2 N -0.75 -7.02 5.72 -72.07 -0.41 -7.44 16 3 C 0.70 9.96 8.30 -86.91 -0.72 9.23 16 4 O -0.56 -10.97 14.01 5.30 0.07 -10.89 16 5 N -0.68 -8.61 5.35 -14.26 -0.08 -8.69 16 6 C 0.14 2.22 6.28 -83.73 -0.53 1.69 16 7 C -0.14 -1.99 9.95 -39.30 -0.39 -2.38 16 8 C -0.12 -1.96 10.02 -39.67 -0.40 -2.36 16 9 C -0.06 -1.26 8.13 -39.14 -0.32 -1.58 16 10 C -0.08 -1.72 5.34 -104.99 -0.56 -2.29 16 11 C 0.53 12.82 7.26 -12.38 -0.09 12.73 16 12 O -0.58 -15.13 16.59 5.29 0.09 -15.05 16 13 N -0.46 -10.96 1.88 -115.92 -0.22 -11.18 16 14 C -0.35 -8.73 6.42 -15.00 -0.10 -8.82 16 15 H 0.10 2.77 7.58 -52.49 -0.40 2.37 16 16 C 0.08 1.95 4.82 -17.45 -0.08 1.87 16 17 N -0.85 -22.35 13.95 55.50 0.77 -21.57 16 18 Si 0.85 19.65 26.55 -169.99 -4.51 15.13 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.25 -5.83 5.44 56.52 0.31 -5.52 16 22 C 0.13 2.86 2.72 -4.04 -0.01 2.85 16 23 C -0.13 -2.44 6.10 -27.88 -0.17 -2.61 16 24 C 0.49 8.67 8.33 36.00 0.30 8.97 16 25 O -0.52 -10.63 16.68 -18.75 -0.31 -10.95 16 26 O -0.52 -7.32 13.42 -39.25 -0.53 -7.85 16 27 C -0.08 -1.56 8.25 -38.96 -0.32 -1.88 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 2.18 8.85 -40.82 -0.36 1.82 16 32 H 0.40 3.26 8.83 -40.82 -0.36 2.90 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.15 3.20 6.00 -52.48 -0.32 2.89 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.50 16 37 H 0.08 1.80 5.38 -51.93 -0.28 1.52 16 38 H 0.08 1.79 7.25 -51.93 -0.38 1.41 16 39 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 41 H 0.40 3.67 9.10 45.56 0.41 4.08 16 42 H 0.14 2.99 6.39 -52.49 -0.34 2.65 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -34.99 360.98 -6.63 -41.62 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.20 Total: 14.47 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: -2.75 Total: 16.95 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.07 Total: -48.87 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.68 Total: -44.74 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.51 Total: 15.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.99 -6.63 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606280405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.423 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds