Wall clock time and date at job start Tue Mar 31 2020 18:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99493 * 2 1 4 4 O 1.21580 * 120.00455 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99454 * 179.97438 * 3 2 1 6 6 C 1.39985 * 119.99819 * 185.51280 * 5 3 2 7 7 C 1.38999 * 119.99610 * 212.97729 * 6 5 3 8 8 C 1.38231 * 120.23565 * 180.02562 * 7 6 5 9 9 C 1.37998 * 120.22748 * 359.69999 * 8 7 6 10 10 C 1.39649 * 119.98914 * 0.58377 * 9 8 7 11 11 C 1.47740 * 120.12006 * 179.71863 * 10 9 8 12 12 O 1.21591 * 120.00017 * 220.72113 * 11 10 9 13 13 N 1.34777 * 119.99889 * 40.72584 * 11 10 9 14 14 C 1.36880 * 119.99792 * 357.96107 * 13 11 10 15 15 H 1.07995 * 119.99639 * 51.86332 * 14 13 11 16 16 C 1.39042 * 119.99886 * 231.85429 * 14 13 11 17 17 N 1.31363 * 120.00089 * 199.79723 * 16 14 13 18 18 Si 1.86806 * 119.99937 * 19.79787 * 16 14 13 19 19 H 1.48501 * 109.47189 * 94.54828 * 18 16 14 20 20 H 1.48501 * 109.47000 * 214.54565 * 18 16 14 21 21 H 1.48494 * 109.47051 * 334.54587 * 18 16 14 22 22 C 1.46499 * 120.00041 * 177.96758 * 13 11 10 23 23 C 1.53000 * 109.46932 * 275.15734 * 22 13 11 24 24 C 1.50697 * 109.47142 * 175.36915 * 23 22 13 25 25 O 1.20826 * 120.00254 * 359.97438 * 24 23 22 26 26 O 1.34227 * 119.99908 * 179.97438 * 24 23 22 27 27 C 1.38562 * 119.99341 * 33.00549 * 6 5 3 28 28 H 1.09001 * 109.47244 * 60.00487 * 1 2 3 29 29 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47348 * 300.00252 * 1 2 3 31 31 H 0.96993 * 120.00514 * 179.97438 * 2 1 3 32 32 H 0.97001 * 120.00244 * 5.51493 * 5 3 2 33 33 H 1.08001 * 119.88440 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.88403 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.00788 * 180.29907 * 9 8 7 36 36 H 0.97001 * 119.99806 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47116 * 155.15611 * 22 13 11 38 38 H 1.09000 * 109.47003 * 35.15258 * 22 13 11 39 39 H 1.09000 * 109.46777 * 295.36750 * 23 22 13 40 40 H 1.09000 * 109.47393 * 55.36688 * 23 22 13 41 41 H 0.96704 * 117.00020 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.11516 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4865 1.1673 0.0005 6 6 4.1864 2.3740 0.1170 7 6 5.4086 2.5333 -0.5255 8 6 6.1042 3.7226 -0.4134 9 6 5.5869 4.7623 0.3321 10 6 4.3626 4.6105 0.9864 11 6 3.8091 5.7196 1.7904 12 8 3.2722 5.4886 2.8566 13 7 3.8992 6.9873 1.3419 14 6 4.5403 7.2518 0.1618 15 1 4.2705 6.7099 -0.7325 16 6 5.5387 8.2184 0.1145 17 7 5.8818 8.7526 -1.0355 18 14 6.3922 8.7573 1.6863 19 1 7.6397 7.9720 1.8665 20 1 6.7251 10.2019 1.5985 21 1 5.4905 8.5266 2.8433 22 6 3.3112 8.0822 2.1176 23 6 1.8277 8.2157 1.7677 24 6 1.1968 9.2648 2.6465 25 8 1.8649 9.8458 3.4686 26 8 -0.1075 9.5538 2.5159 27 6 3.6608 3.4094 0.8732 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8399 0.0004 32 1 3.9716 0.3311 -0.0798 33 1 5.8164 1.7250 -1.1143 34 1 7.0532 3.8404 -0.9153 35 1 6.1311 5.6918 0.4133 36 1 6.5780 9.4272 -1.0685 37 1 3.8258 9.0133 1.8797 38 1 3.4159 7.8708 3.1817 39 1 1.7258 8.5079 0.7226 40 1 1.3292 7.2597 1.9280 41 1 -0.4674 10.2336 3.1021 42 1 2.7117 3.2871 1.3738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606280405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:51 Heat of formation + Delta-G solvation = -136.637092 kcal Electronic energy + Delta-G solvation = -29027.892587 eV Core-core repulsion = 24779.680729 eV Total energy + Delta-G solvation = -4248.211858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77279 -41.42689 -40.79662 -39.14708 -37.33017 -36.93017 -35.80819 -35.67125 -34.27118 -32.84376 -31.65729 -30.54780 -27.40694 -26.99319 -26.55774 -24.09894 -23.57959 -22.24404 -21.85857 -21.18725 -19.79689 -19.53109 -19.18693 -18.15048 -17.90791 -17.46901 -17.18251 -16.99888 -16.66544 -16.56302 -16.16692 -16.03042 -15.55851 -15.46559 -15.06861 -14.74250 -14.57448 -14.48629 -14.17117 -14.06005 -14.00838 -13.56975 -13.45877 -13.04108 -13.00348 -12.72207 -12.62358 -12.55035 -12.41615 -12.13169 -11.82832 -11.73179 -11.50711 -11.26991 -11.13257 -10.60893 -10.19270 -9.80287 -9.64728 -8.96839 -8.51245 -6.24990 0.15549 0.50137 1.10245 1.23852 1.33680 1.45183 1.61045 1.76985 1.97007 2.12128 2.21502 2.67520 2.83028 3.09300 3.28830 3.80727 3.87107 4.03754 4.09733 4.33231 4.34055 4.43884 4.52415 4.55216 4.63097 4.65378 4.66217 4.69853 4.86391 4.97139 5.05335 5.29783 5.41227 5.43009 5.50114 5.51372 5.61180 5.72888 5.98051 6.08414 6.13384 6.22223 6.93211 6.93727 7.02417 7.28499 7.50214 7.67532 8.60216 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004188 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.648164 B = 6683.656569 C = 8704.528352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.728 5.728 3 C 0.688 3.312 4 O -0.622 6.622 5 N -0.666 5.666 6 C 0.143 3.857 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.082 4.082 10 C -0.111 4.111 11 C 0.523 3.477 12 O -0.613 6.613 13 N -0.464 5.464 14 C -0.337 4.337 15 H 0.079 0.921 16 C 0.058 3.942 17 N -0.880 5.880 18 Si 0.891 3.109 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.260 1.260 22 C 0.127 3.873 23 C -0.122 4.122 24 C 0.499 3.501 25 O -0.548 6.548 26 O -0.505 6.505 27 C -0.096 4.096 28 H 0.046 0.954 29 H 0.121 0.879 30 H 0.042 0.958 31 H 0.419 0.581 32 H 0.428 0.572 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.282 0.718 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.429 0.571 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 -16.665 -1.250 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.384 5.384 3 C 0.389 3.611 4 O -0.501 6.501 5 N -0.316 5.316 6 C 0.048 3.952 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.101 4.101 10 C -0.114 4.114 11 C 0.314 3.686 12 O -0.499 6.499 13 N -0.184 5.184 14 C -0.465 4.465 15 H 0.096 0.904 16 C -0.149 4.149 17 N -0.515 5.515 18 Si 0.715 3.285 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.185 1.185 22 C 0.003 3.997 23 C -0.160 4.160 24 C 0.343 3.657 25 O -0.439 6.439 26 O -0.319 6.319 27 C -0.118 4.118 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.256 0.744 32 H 0.268 0.732 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.291 0.709 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.641 -15.871 -0.881 16.560 hybrid contribution 0.431 0.698 1.030 1.316 sum -4.210 -15.174 0.148 15.748 Atomic orbital electron populations 1.21584 0.77051 1.04416 1.01148 1.44759 1.08333 1.06376 1.78961 1.16338 0.81973 0.84973 0.77863 1.90992 1.68613 1.32386 1.58124 1.42232 1.04329 1.08593 1.76461 1.17274 0.93646 0.86516 0.97725 1.21277 0.93680 0.99258 0.98924 1.21241 1.01124 0.91878 0.98708 1.21664 0.94438 0.99390 0.94632 1.19611 0.97228 0.93600 1.00961 1.19090 0.80190 0.84472 0.84812 1.90607 1.49469 1.85280 1.24533 1.43546 1.49471 1.04079 1.21342 1.18631 1.17578 1.24100 0.86156 0.90353 1.25745 0.95915 0.95226 0.98061 1.69771 1.29775 1.25241 1.26672 0.86644 0.80589 0.78560 0.82715 1.18894 1.19996 1.18457 1.21402 0.91540 0.90985 0.95727 1.21621 0.95941 0.97490 1.00985 1.23178 0.80215 0.81287 0.81026 1.90689 1.64224 1.52190 1.36841 1.84509 1.24921 1.59430 1.63022 1.20923 0.99620 0.92778 0.98479 0.93483 0.86060 0.93965 0.74353 0.73209 0.81025 0.82461 0.85608 0.90792 0.90964 0.92223 0.86128 0.88005 0.70907 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.52 10.70 127.77 1.37 2.89 16 2 N -0.73 -11.91 5.72 -500.18 -2.86 -14.77 16 3 C 0.69 18.89 8.30 179.05 1.49 20.37 16 4 O -0.62 -24.84 14.01 -3.97 -0.06 -24.90 16 5 N -0.67 -15.09 5.35 -317.28 -1.70 -16.79 16 6 C 0.14 4.44 6.28 38.10 0.24 4.68 16 7 C -0.11 -2.81 9.95 22.45 0.22 -2.59 16 8 C -0.11 -3.36 10.02 22.21 0.22 -3.13 16 9 C -0.08 -3.31 8.13 22.55 0.18 -3.13 16 10 C -0.11 -5.01 5.34 -20.10 -0.11 -5.12 16 11 C 0.52 26.71 7.26 86.76 0.63 27.34 16 12 O -0.61 -33.69 16.59 -4.00 -0.07 -33.75 16 13 N -0.46 -23.22 1.88 -638.93 -1.20 -24.42 16 14 C -0.34 -17.40 6.42 84.10 0.54 -16.86 16 15 H 0.08 4.42 7.58 -2.91 -0.02 4.40 16 16 C 0.06 2.95 4.82 84.96 0.41 3.36 16 17 N -0.88 -46.74 13.95 21.68 0.30 -46.43 16 18 Si 0.89 41.18 26.55 68.60 1.82 43.01 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -12.50 5.44 99.48 0.54 -11.96 16 22 C 0.13 5.95 2.72 86.38 0.23 6.18 16 23 C -0.12 -4.84 6.10 29.85 0.18 -4.66 16 24 C 0.50 17.79 8.33 71.23 0.59 18.38 16 25 O -0.55 -22.52 16.68 21.96 0.37 -22.15 16 26 O -0.51 -13.46 13.42 -51.39 -0.69 -14.15 16 27 C -0.10 -4.01 8.25 22.67 0.19 -3.82 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.42 3.02 8.85 -92.71 -0.82 2.20 16 32 H 0.43 5.08 8.83 -92.71 -0.82 4.26 16 33 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.13 5.60 6.00 -2.91 -0.02 5.59 16 36 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.07 3.43 5.38 -2.39 -0.01 3.42 16 38 H 0.06 2.96 7.25 -2.39 -0.02 2.95 16 39 H 0.12 4.58 8.14 -2.39 -0.02 4.56 16 40 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 41 H 0.43 6.84 9.10 -74.05 -0.67 6.16 16 42 H 0.11 5.02 6.39 -2.91 -0.02 5.00 16 Total: -1.00 -81.75 360.98 0.95 -80.79 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -1.36 Total: 29.67 kcal Atomic # 6 Polarization: 37.49 SS G_CDS: 6.39 Total: 43.88 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.45 Total: -102.41 kcal Atomic # 8 Polarization: -94.50 SS G_CDS: -0.45 Total: -94.95 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.82 Total: 43.01 kcal Total: -81.75 0.95 -80.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606280405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.845 kcal (2) G-P(sol) polarization free energy of solvation -81.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds