Wall clock time and date at job start Tue Mar 31 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35738 * 125.63779 * 2 1 4 4 C 1.36055 * 108.77961 * 180.14754 * 3 2 1 5 5 N 1.40413 * 126.13363 * 179.83444 * 4 3 2 6 6 C 1.34769 * 120.00368 * 179.71927 * 5 4 3 7 7 O 1.21403 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.49328 * 120.00398 * 179.97438 * 6 5 4 9 9 O 1.21359 * 119.99712 * 5.09122 * 8 6 5 10 10 N 1.34769 * 120.00170 * 185.08544 * 8 6 5 11 11 C 1.46497 * 120.00011 * 185.03792 * 10 8 6 12 12 C 1.53005 * 109.47129 * 184.78311 * 11 10 8 13 13 C 1.50694 * 115.55071 * 294.81535 * 12 11 10 14 14 H 1.08007 * 119.99700 * 95.19890 * 13 12 11 15 15 C 1.37881 * 120.00392 * 274.92968 * 13 12 11 16 16 N 1.31513 * 119.99705 * 355.41440 * 15 13 12 17 17 Si 1.86797 * 120.00146 * 175.41495 * 15 13 12 18 18 H 1.48506 * 109.47089 * 90.00138 * 17 15 13 19 19 H 1.48500 * 109.47109 * 209.99979 * 17 15 13 20 20 H 1.48506 * 109.47170 * 330.00094 * 17 15 13 21 21 C 1.53001 * 117.50067 * 80.49127 * 12 11 10 22 22 C 1.53002 * 117.49903 * 149.14898 * 12 11 10 23 23 C 1.40229 * 107.73655 * 359.57543 * 4 3 2 24 24 C 1.37683 * 125.62974 * 179.66991 * 2 1 3 25 25 C 1.46481 * 126.17090 * 0.02562 * 24 2 1 26 26 O 1.21627 * 120.00214 * 180.02562 * 25 24 2 27 27 O 1.34899 * 119.99852 * 359.97438 * 25 24 2 28 28 H 1.09000 * 109.47216 * 270.33248 * 1 2 3 29 29 H 1.09004 * 109.46621 * 30.33035 * 1 2 3 30 30 H 1.09000 * 109.47385 * 150.33219 * 1 2 3 31 31 H 1.07997 * 125.60754 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99792 * 359.71442 * 5 4 3 33 33 H 0.97000 * 120.00088 * 5.04382 * 10 8 6 34 34 H 1.09004 * 109.47290 * 64.78043 * 11 10 8 35 35 H 1.09002 * 109.47245 * 304.78204 * 11 10 8 36 36 H 0.97005 * 120.00163 * 184.99986 * 16 15 13 37 37 H 1.08995 * 117.49983 * 215.00500 * 21 12 11 38 38 H 1.09003 * 117.49466 * 0.02562 * 21 12 11 39 39 H 1.09003 * 117.50088 * 359.97438 * 22 12 11 40 40 H 1.09000 * 117.49885 * 144.97067 * 22 12 11 41 41 H 1.07999 * 126.45716 * 180.29975 * 23 4 3 42 42 H 0.96706 * 116.99776 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1032 0.0000 4 6 3.5580 0.7086 -0.0033 5 7 4.6792 1.5538 -0.0077 6 6 5.9199 1.0275 -0.0049 7 8 6.0682 -0.1774 0.0018 8 6 7.1123 1.9263 -0.0101 9 8 6.9667 3.1280 0.0764 10 7 8.3502 1.4031 -0.1109 11 6 9.5241 2.2731 -0.0051 12 6 10.7901 1.4561 -0.2713 13 6 11.0946 0.3814 0.7401 14 1 10.7752 -0.6347 0.5611 15 6 11.7859 0.6939 1.8915 16 7 12.2579 1.9090 2.0656 17 14 12.0520 -0.6084 3.2039 18 1 13.3213 -1.3307 2.9343 19 1 12.1254 0.0406 4.5375 20 1 10.9209 -1.5705 3.1831 21 6 11.1577 1.1780 -1.7302 22 6 11.9762 2.1798 -0.9119 23 6 3.5795 -0.6935 0.0044 24 6 2.2671 -1.1191 0.0064 25 6 1.8096 -2.5106 0.0139 26 8 2.6202 -3.4173 0.0197 27 8 0.4891 -2.7864 0.0155 28 1 -0.3633 0.0060 1.0276 29 1 -0.3633 0.8871 -0.5190 30 1 -0.3634 -0.8929 -0.5087 31 1 1.9087 2.1258 -0.0004 32 1 4.5608 2.5166 -0.0127 33 1 8.4639 0.4504 -0.2534 34 1 9.5710 2.6999 0.9967 35 1 9.4487 3.0757 -0.7388 36 1 12.8057 2.1102 2.8404 37 1 11.6198 0.2175 -1.9584 38 1 10.4979 1.5774 -2.5004 39 1 11.8545 3.2378 -1.1442 40 1 12.9767 1.8787 -0.6015 41 1 4.4579 -1.3218 0.0088 42 1 0.2356 -3.7196 0.0209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608115859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:34 Heat of formation + Delta-G solvation = -76.137172 kcal Electronic energy + Delta-G solvation = -27934.965639 eV Core-core repulsion = 23689.377255 eV Total energy + Delta-G solvation = -4245.588384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90764 -40.32787 -39.75567 -38.23305 -36.72850 -36.41477 -35.25567 -33.38839 -32.30102 -31.95901 -29.72195 -27.41968 -26.48841 -25.43718 -24.59431 -23.35594 -21.21864 -20.79847 -20.77418 -19.71244 -19.29091 -18.71151 -17.94613 -17.56043 -16.36780 -16.35898 -16.12476 -15.75614 -15.60513 -15.17069 -15.13163 -14.74383 -14.63699 -14.09633 -14.03580 -13.72469 -13.42627 -13.24186 -12.83602 -12.72423 -12.68547 -12.55344 -11.92433 -11.87706 -11.61744 -11.21090 -11.04356 -10.97743 -10.93101 -10.87266 -10.50716 -10.23868 -9.60879 -9.24694 -9.08540 -8.80671 -8.53496 -8.40170 -8.18160 -7.97698 -6.07654 -4.17265 0.90458 1.53459 2.20252 2.45062 2.55156 2.85718 2.92356 3.28882 3.36749 3.41568 3.61715 3.99216 4.37807 4.39394 4.52338 4.72570 4.81897 4.85943 5.06735 5.16975 5.20073 5.34611 5.54607 5.65102 5.95901 6.03623 6.09986 6.28827 6.36678 6.39919 6.47488 6.66611 6.70191 6.74986 6.81961 6.98063 7.09107 7.21423 7.33297 7.50542 7.58690 7.80954 7.83276 8.10283 8.32506 8.47459 8.85168 9.50686 10.99314 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.002533 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.072422 B =11049.555075 C =11978.904038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.416 5.416 3 C 0.006 3.994 4 C 0.057 3.943 5 N -0.624 5.624 6 C 0.508 3.492 7 O -0.499 6.499 8 C 0.500 3.500 9 O -0.540 6.540 10 N -0.663 5.663 11 C 0.159 3.841 12 C 0.021 3.979 13 C -0.501 4.501 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.210 4.210 22 C -0.139 4.139 23 C -0.090 4.090 24 C -0.043 4.043 25 C 0.556 3.444 26 O -0.499 6.499 27 O -0.522 6.522 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.422 0.578 33 H 0.415 0.585 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.179 0.821 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.196 -1.359 -5.040 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.092 5.092 3 C -0.132 4.132 4 C -0.043 4.043 5 N -0.270 5.270 6 C 0.290 3.710 7 O -0.372 6.372 8 C 0.279 3.721 9 O -0.419 6.419 10 N -0.313 5.313 11 C 0.037 3.963 12 C 0.020 3.980 13 C -0.539 4.539 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.247 4.247 22 C -0.177 4.177 23 C -0.118 4.118 24 C -0.153 4.153 25 C 0.400 3.600 26 O -0.386 6.386 27 O -0.336 6.336 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.196 0.804 32 H 0.259 0.741 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.196 0.804 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -25.092 -1.117 -4.785 25.569 hybrid contribution 0.027 -1.057 0.800 1.326 sum -25.065 -2.174 -3.985 25.473 Atomic orbital electron populations 1.22280 0.75446 1.05233 1.04046 1.43721 1.06723 1.04700 1.54032 1.21425 0.88557 0.92116 1.11126 1.16834 0.86063 0.90585 1.10812 1.42488 1.02913 1.10307 1.71300 1.20565 0.84242 0.88733 0.77480 1.90713 1.85750 1.14716 1.45992 1.19663 0.84570 0.87847 0.79986 1.90723 1.86131 1.14511 1.50552 1.45887 1.04412 1.13884 1.67079 1.21241 0.82754 0.91048 1.01284 1.19029 0.91173 0.97669 0.90141 1.20397 1.37676 0.93617 1.02167 0.91942 1.24984 0.95102 0.95207 0.97748 1.69987 1.33164 1.18977 1.29086 0.86618 0.78710 0.81749 0.81195 1.20656 1.21183 1.19542 1.23037 1.05529 1.00561 0.95570 1.22477 0.97695 0.94496 1.03074 1.21809 0.95205 0.93312 1.01471 1.19244 0.90243 0.83970 1.21842 1.19388 0.79938 0.87843 0.72824 1.91006 1.54988 1.46310 1.46297 1.84592 1.26348 1.36018 1.86616 0.90364 0.89486 0.88137 0.80420 0.74070 0.74856 0.90688 0.93285 0.92863 0.90194 0.91619 0.91730 0.89388 0.80367 0.72640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.56 59.85 0.63 0.95 16 2 N -0.42 -3.58 3.17 -120.03 -0.38 -3.96 16 3 C 0.01 0.05 11.42 -16.61 -0.19 -0.14 16 4 C 0.06 0.70 6.90 -83.96 -0.58 0.12 16 5 N -0.62 -8.02 5.45 -10.48 -0.06 -8.07 16 6 C 0.51 8.28 7.85 -11.65 -0.09 8.19 16 7 O -0.50 -9.12 13.67 5.45 0.07 -9.05 16 8 C 0.50 9.15 7.88 -11.65 -0.09 9.05 16 9 O -0.54 -10.53 16.47 5.49 0.09 -10.44 16 10 N -0.66 -13.07 5.46 -60.77 -0.33 -13.41 16 11 C 0.16 3.49 5.53 -4.04 -0.02 3.46 16 12 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16 13 C -0.50 -13.00 8.59 -34.44 -0.30 -13.29 16 14 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 15 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 16 N -0.88 -24.07 12.65 55.43 0.70 -23.37 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 22 C -0.14 -3.14 9.14 -26.69 -0.24 -3.38 16 23 C -0.09 -1.27 9.43 -38.93 -0.37 -1.64 16 24 C -0.04 -0.51 6.88 -82.02 -0.56 -1.07 16 25 C 0.56 6.22 8.29 34.05 0.28 6.51 16 26 O -0.50 -7.39 17.67 -19.36 -0.34 -7.73 16 27 O -0.52 -3.39 10.85 -41.04 -0.45 -3.83 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.44 6.14 -51.93 -0.32 0.12 16 31 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.42 4.45 8.30 -40.82 -0.34 4.12 16 33 H 0.41 8.14 7.83 -40.82 -0.32 7.82 16 34 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 35 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.18 2.97 5.97 -52.49 -0.31 2.66 16 42 H 0.41 0.93 9.11 45.56 0.42 1.35 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -33.49 372.17 -6.45 -39.94 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.22 Total: 12.17 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.12 Total: 6.25 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.07 Total: -48.81 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.62 Total: -31.05 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.49 -6.45 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608115859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds