Wall clock time and date at job start Tue Mar 31 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35738 * 125.63779 * 2 1 4 4 C 1.36055 * 108.77961 * 180.14754 * 3 2 1 5 5 N 1.40413 * 126.13363 * 179.83444 * 4 3 2 6 6 C 1.34769 * 120.00368 * 179.71927 * 5 4 3 7 7 O 1.21403 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.49328 * 120.00398 * 179.97438 * 6 5 4 9 9 O 1.21359 * 119.99712 * 5.09122 * 8 6 5 10 10 N 1.34769 * 120.00170 * 185.08544 * 8 6 5 11 11 C 1.46497 * 120.00011 * 185.03792 * 10 8 6 12 12 C 1.53005 * 109.47129 * 184.78311 * 11 10 8 13 13 C 1.50694 * 115.55071 * 294.81535 * 12 11 10 14 14 H 1.08007 * 119.99700 * 95.19890 * 13 12 11 15 15 C 1.37881 * 120.00392 * 274.92968 * 13 12 11 16 16 N 1.31513 * 119.99705 * 355.41440 * 15 13 12 17 17 Si 1.86797 * 120.00146 * 175.41495 * 15 13 12 18 18 H 1.48506 * 109.47089 * 90.00138 * 17 15 13 19 19 H 1.48500 * 109.47109 * 209.99979 * 17 15 13 20 20 H 1.48506 * 109.47170 * 330.00094 * 17 15 13 21 21 C 1.53001 * 117.50067 * 80.49127 * 12 11 10 22 22 C 1.53002 * 117.49903 * 149.14898 * 12 11 10 23 23 C 1.40229 * 107.73655 * 359.57543 * 4 3 2 24 24 C 1.37683 * 125.62974 * 179.66991 * 2 1 3 25 25 C 1.46481 * 126.17090 * 0.02562 * 24 2 1 26 26 O 1.21627 * 120.00214 * 180.02562 * 25 24 2 27 27 O 1.34899 * 119.99852 * 359.97438 * 25 24 2 28 28 H 1.09000 * 109.47216 * 270.33248 * 1 2 3 29 29 H 1.09004 * 109.46621 * 30.33035 * 1 2 3 30 30 H 1.09000 * 109.47385 * 150.33219 * 1 2 3 31 31 H 1.07997 * 125.60754 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99792 * 359.71442 * 5 4 3 33 33 H 0.97000 * 120.00088 * 5.04382 * 10 8 6 34 34 H 1.09004 * 109.47290 * 64.78043 * 11 10 8 35 35 H 1.09002 * 109.47245 * 304.78204 * 11 10 8 36 36 H 0.97005 * 120.00163 * 184.99986 * 16 15 13 37 37 H 1.08995 * 117.49983 * 215.00500 * 21 12 11 38 38 H 1.09003 * 117.49466 * 0.02562 * 21 12 11 39 39 H 1.09003 * 117.50088 * 359.97438 * 22 12 11 40 40 H 1.09000 * 117.49885 * 144.97067 * 22 12 11 41 41 H 1.07999 * 126.45716 * 180.29975 * 23 4 3 42 42 H 0.96706 * 116.99776 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1032 0.0000 4 6 3.5580 0.7086 -0.0033 5 7 4.6792 1.5538 -0.0077 6 6 5.9199 1.0275 -0.0049 7 8 6.0682 -0.1774 0.0018 8 6 7.1123 1.9263 -0.0101 9 8 6.9667 3.1280 0.0764 10 7 8.3502 1.4031 -0.1109 11 6 9.5241 2.2731 -0.0051 12 6 10.7901 1.4561 -0.2713 13 6 11.0946 0.3814 0.7401 14 1 10.7752 -0.6347 0.5611 15 6 11.7859 0.6939 1.8915 16 7 12.2579 1.9090 2.0656 17 14 12.0520 -0.6084 3.2039 18 1 13.3213 -1.3307 2.9343 19 1 12.1254 0.0406 4.5375 20 1 10.9209 -1.5705 3.1831 21 6 11.1577 1.1780 -1.7302 22 6 11.9762 2.1798 -0.9119 23 6 3.5795 -0.6935 0.0044 24 6 2.2671 -1.1191 0.0064 25 6 1.8096 -2.5106 0.0139 26 8 2.6202 -3.4173 0.0197 27 8 0.4891 -2.7864 0.0155 28 1 -0.3633 0.0060 1.0276 29 1 -0.3633 0.8871 -0.5190 30 1 -0.3634 -0.8929 -0.5087 31 1 1.9087 2.1258 -0.0004 32 1 4.5608 2.5166 -0.0127 33 1 8.4639 0.4504 -0.2534 34 1 9.5710 2.6999 0.9967 35 1 9.4487 3.0757 -0.7388 36 1 12.8057 2.1102 2.8404 37 1 11.6198 0.2175 -1.9584 38 1 10.4979 1.5774 -2.5004 39 1 11.8545 3.2378 -1.1442 40 1 12.9767 1.8787 -0.6015 41 1 4.4579 -1.3218 0.0088 42 1 0.2356 -3.7196 0.0209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608115859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:33 Heat of formation + Delta-G solvation = -101.376740 kcal Electronic energy + Delta-G solvation = -27936.060109 eV Core-core repulsion = 23689.377255 eV Total energy + Delta-G solvation = -4246.682854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.76536 -41.57809 -40.66696 -39.63762 -38.46130 -37.18416 -36.37553 -34.93935 -33.96036 -33.09115 -30.58735 -28.86399 -27.61286 -27.10154 -25.66800 -24.46031 -22.92279 -21.90774 -21.64670 -21.38445 -20.63404 -19.69107 -19.05643 -18.50621 -17.95717 -17.65797 -17.20620 -16.94241 -16.61573 -16.47446 -16.34613 -16.07102 -15.89014 -15.61803 -15.17582 -14.88510 -14.72205 -14.42013 -14.33061 -13.71573 -13.54064 -13.50438 -13.41106 -13.08375 -12.95222 -12.83475 -12.68406 -12.56233 -12.38329 -12.00531 -11.98371 -11.82243 -11.40778 -10.97708 -10.71468 -10.45088 -10.12508 -9.95780 -9.66163 -8.86683 -8.10951 -6.24151 0.07136 0.22601 1.20375 1.40004 1.44001 1.50642 1.52491 1.69675 1.96907 2.04340 2.31107 2.41686 2.74277 3.16661 3.40629 3.59581 3.78573 4.05312 4.10694 4.20684 4.34432 4.52495 4.52716 4.63801 4.65827 4.69654 4.77660 4.91771 4.94928 5.00279 5.03505 5.29756 5.34279 5.40477 5.53920 5.57033 5.69400 5.76276 5.77531 6.07140 6.11151 6.36350 6.47201 6.78620 6.83237 6.89833 6.98050 7.45482 8.95561 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.002533 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.072422 B =11049.555075 C =11978.904038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.400 5.400 3 C 0.048 3.952 4 C 0.019 3.981 5 N -0.601 5.601 6 C 0.508 3.492 7 O -0.526 6.526 8 C 0.505 3.495 9 O -0.551 6.551 10 N -0.669 5.669 11 C 0.175 3.825 12 C -0.004 4.004 13 C -0.509 4.509 14 H 0.056 0.944 15 C 0.030 3.970 16 N -0.902 5.902 17 Si 0.943 3.057 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.182 4.182 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.059 4.059 25 C 0.563 3.437 26 O -0.547 6.547 27 O -0.500 6.500 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.229 0.771 32 H 0.434 0.566 33 H 0.415 0.585 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.141 0.859 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.654 -0.475 -5.607 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.074 5.074 3 C -0.093 4.093 4 C -0.079 4.079 5 N -0.248 5.248 6 C 0.290 3.710 7 O -0.402 6.402 8 C 0.285 3.715 9 O -0.430 6.430 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.004 4.004 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.171 4.171 16 N -0.539 5.539 17 Si 0.769 3.231 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.219 4.219 22 C -0.182 4.182 23 C -0.154 4.154 24 C -0.170 4.170 25 C 0.409 3.591 26 O -0.439 6.439 27 O -0.314 6.314 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.120 0.880 31 H 0.246 0.754 32 H 0.274 0.726 33 H 0.251 0.749 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -28.650 -0.233 -5.361 29.149 hybrid contribution 0.885 -1.314 0.950 1.847 sum -27.765 -1.547 -4.411 28.156 Atomic orbital electron populations 1.22691 0.72385 1.07072 1.05633 1.44088 1.08338 1.03574 1.51438 1.22113 0.86816 0.93861 1.06467 1.17019 0.87135 0.89783 1.13971 1.42239 1.02048 1.11003 1.69486 1.20106 0.84720 0.87915 0.78282 1.90735 1.86083 1.15495 1.47896 1.19975 0.84753 0.87927 0.78859 1.90704 1.86410 1.15105 1.50817 1.45798 1.04543 1.13588 1.67896 1.20856 0.83128 0.91224 0.99615 1.19068 0.92054 0.97936 0.91366 1.20661 1.37048 0.94055 1.02931 0.92625 1.25595 0.95324 0.96760 0.99420 1.70075 1.34030 1.20241 1.29582 0.85784 0.78524 0.79712 0.79041 1.20083 1.21219 1.19758 1.23024 1.04322 1.00040 0.94528 1.22399 0.96380 0.95598 1.03847 1.21593 0.95457 0.94402 1.03906 1.19137 0.90095 0.85202 1.22563 1.19347 0.80760 0.87259 0.71688 1.90987 1.56538 1.47575 1.48751 1.84538 1.23392 1.37992 1.85526 0.88818 0.86101 0.87971 0.75435 0.72608 0.74901 0.93943 0.92260 0.93026 0.90099 0.89078 0.90432 0.91655 0.84113 0.70235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.56 127.77 1.35 1.60 16 2 N -0.40 -5.51 3.17 -533.68 -1.69 -7.20 16 3 C 0.05 0.63 11.42 83.58 0.95 1.59 16 4 C 0.02 0.45 6.90 37.74 0.26 0.71 16 5 N -0.60 -14.88 5.45 -305.42 -1.66 -16.55 16 6 C 0.51 16.84 7.85 87.23 0.68 17.52 16 7 O -0.53 -20.23 13.67 -3.41 -0.05 -20.28 16 8 C 0.50 18.58 7.88 87.23 0.69 19.27 16 9 O -0.55 -21.25 16.47 -3.27 -0.05 -21.31 16 10 N -0.67 -26.81 5.46 -464.54 -2.54 -29.35 16 11 C 0.17 7.76 5.53 86.38 0.48 8.24 16 12 C 0.00 -0.17 1.47 -52.93 -0.08 -0.24 16 13 C -0.51 -26.89 8.59 25.60 0.22 -26.67 16 14 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 15 C 0.03 1.63 5.43 84.66 0.46 2.09 16 16 N -0.90 -50.59 12.65 21.45 0.27 -50.31 16 17 Si 0.94 43.70 29.54 68.60 2.03 45.72 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.18 -7.39 9.96 30.62 0.30 -7.08 16 22 C -0.14 -6.49 9.14 30.62 0.28 -6.21 16 23 C -0.13 -3.64 9.43 22.69 0.21 -3.43 16 24 C -0.06 -1.34 6.88 40.31 0.28 -1.06 16 25 C 0.56 12.38 8.29 69.97 0.58 12.96 16 26 O -0.55 -16.90 17.67 19.42 0.34 -16.55 16 27 O -0.50 -5.37 10.85 -58.14 -0.63 -6.00 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.12 -0.22 8.14 -2.38 -0.02 -0.24 16 30 H 0.10 0.46 6.14 -2.39 -0.01 0.44 16 31 H 0.23 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.43 8.29 8.30 -92.71 -0.77 7.52 16 33 H 0.41 16.71 7.83 -92.71 -0.73 15.99 16 34 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.47 8.05 -2.39 -0.02 2.45 16 36 H 0.26 14.07 8.32 -92.70 -0.77 13.29 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.14 5.16 5.97 -2.91 -0.02 5.14 16 42 H 0.43 0.97 9.11 -74.05 -0.67 0.30 16 Total: -1.00 -76.60 372.17 1.63 -74.97 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -1.05 Total: 27.57 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.67 Total: 19.29 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.62 Total: -103.41 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -0.39 Total: -64.13 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.60 1.63 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608115859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.412 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds