Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99999 * 2 1 4 4 C 1.50701 * 109.46992 * 85.00120 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 S 1.65593 * 119.99605 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40784 * 23.53826 * 12 2 1 14 14 O 1.42105 * 106.40278 * 156.45824 * 12 2 1 15 15 N 1.65598 * 107.21993 * 269.99784 * 12 2 1 16 16 C 1.47078 * 120.88135 * 269.72651 * 15 12 2 17 17 C 1.53698 * 108.27941 * 128.75484 * 16 15 12 18 18 N 1.46897 * 109.25714 * 54.07702 * 17 16 15 19 19 C 1.46900 * 110.99703 * 172.60714 * 18 17 16 20 20 C 1.52996 * 109.47478 * 294.30610 * 19 18 17 21 21 C 1.50707 * 109.47000 * 180.02562 * 20 19 18 22 22 O 1.20820 * 119.99962 * 359.97438 * 21 20 19 23 23 O 1.34229 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.46894 * 111.27256 * 296.76024 * 18 17 16 25 25 C 1.47082 * 120.88227 * 90.00099 * 15 12 2 26 26 H 1.09000 * 109.47587 * 89.99812 * 1 2 3 27 27 H 1.08997 * 109.47205 * 209.99963 * 1 2 3 28 28 H 1.09003 * 109.46728 * 329.99785 * 1 2 3 29 29 H 1.09002 * 109.47391 * 325.00111 * 3 2 1 30 30 H 1.09001 * 109.46813 * 205.00167 * 3 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.63004 * 248.51935 * 16 15 12 33 33 H 1.09004 * 109.63267 * 9.10028 * 16 15 12 34 34 H 1.09007 * 109.64613 * 294.07652 * 17 16 15 35 35 H 1.09001 * 109.42158 * 173.95090 * 17 16 15 36 36 H 1.09004 * 109.46763 * 54.31266 * 19 18 17 37 37 H 1.09003 * 109.46904 * 174.30260 * 19 18 17 38 38 H 1.08994 * 109.47279 * 299.99735 * 20 19 18 39 39 H 1.08994 * 109.47320 * 60.00211 * 20 19 18 40 40 H 0.96704 * 116.99844 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.49134 * 303.14872 * 24 18 17 42 42 H 1.08996 * 109.49410 * 183.06542 * 24 18 17 43 43 H 1.09001 * 109.62774 * 350.89792 * 25 15 12 44 44 H 1.09002 * 109.62856 * 111.47888 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5034 3.6468 0.6707 8 14 3.1797 3.5658 3.4210 9 1 2.5322 2.6060 4.3509 10 1 4.6208 3.6860 3.7588 11 1 2.5289 4.8946 3.5482 12 16 2.2929 -1.4341 -0.0006 13 8 1.4112 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8594 1.5809 16 6 3.7458 -1.4272 2.3003 17 6 3.3119 -0.7754 3.6229 18 7 2.4493 -1.7068 4.3619 19 6 2.1543 -1.1963 5.7074 20 6 3.4435 -1.1516 6.5300 21 6 3.1406 -0.6284 7.9105 22 8 2.0098 -0.3222 8.2059 23 8 4.1273 -0.5026 8.8119 24 6 1.2116 -1.9879 3.6224 25 6 1.5566 -2.6843 2.3017 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6502 2.0043 -0.5894 30 1 3.1858 1.1176 -0.4343 31 1 3.9669 4.4805 0.8473 32 1 4.3790 -2.2906 2.5047 33 1 4.2927 -0.7034 1.6960 34 1 2.7623 0.1430 3.4159 35 1 4.1942 -0.5449 4.2200 36 1 1.7366 -0.1923 5.6315 37 1 1.4344 -1.8532 6.1955 38 1 3.8610 -2.1555 6.6059 39 1 4.1634 -0.4946 6.0419 40 1 3.8844 -0.1623 9.6839 41 1 0.6913 -1.0527 3.4153 42 1 0.5706 -2.6368 4.2192 43 1 0.6553 -2.7921 1.6982 44 1 1.9833 -3.6663 2.5061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610115535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = -152.648470 kcal Electronic energy + Delta-G solvation = -29275.150460 eV Core-core repulsion = 25161.688249 eV Total energy + Delta-G solvation = -4113.462212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45300 -38.78344 -36.72532 -36.38737 -35.50435 -35.23666 -34.89731 -32.56113 -31.40071 -30.73676 -27.82919 -26.59257 -25.12072 -23.66556 -23.45683 -22.38250 -20.89557 -20.21519 -18.48526 -18.21299 -17.39683 -16.84765 -16.76385 -16.39405 -16.36112 -15.78921 -15.05650 -14.79365 -14.71648 -14.41578 -14.26006 -14.12815 -13.45814 -13.34583 -13.30314 -13.05884 -12.37771 -12.31213 -12.22410 -12.01008 -11.91259 -11.74917 -11.72363 -11.53878 -11.38715 -11.23151 -11.18863 -11.09810 -10.79513 -10.78060 -10.71422 -10.62022 -10.49703 -10.10403 -9.80182 -8.85175 -8.57510 -8.19966 -8.01351 -6.18635 -4.25001 1.23314 2.03028 2.78229 3.14852 3.23200 3.25081 3.43617 3.99523 4.13783 4.27295 4.61988 4.82882 4.88657 4.90666 5.15458 5.16180 5.23554 5.38027 5.39986 5.49777 5.55895 5.65789 5.67506 5.72610 5.78735 5.85570 6.00101 6.03697 6.08972 6.23317 6.29688 6.38018 6.41606 6.51599 6.87661 7.06519 7.11053 7.30476 7.39924 7.59975 7.69438 7.79423 8.09268 8.80006 9.40494 10.89487 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.005292 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.443045 B = 5289.908568 C = 7060.863768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.998 5.998 3 C 0.244 3.756 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.283 1.283 12 S 2.786 3.214 13 O -0.999 6.999 14 O -0.976 6.976 15 N -1.006 6.006 16 C 0.139 3.861 17 C 0.024 3.976 18 N -0.536 5.536 19 C 0.066 3.934 20 C -0.113 4.113 21 C 0.481 3.519 22 O -0.518 6.518 23 O -0.518 6.518 24 C 0.044 3.956 25 C 0.133 3.867 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.409 0.591 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -10.279 10.622 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.209 1.209 12 S 2.795 3.205 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.845 5.845 16 C 0.013 3.987 17 C -0.104 4.104 18 N -0.261 5.261 19 C -0.062 4.062 20 C -0.151 4.151 21 C 0.324 3.676 22 O -0.406 6.406 23 O -0.330 6.330 24 C -0.086 4.086 25 C 0.006 3.994 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.267 0.733 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.157 -11.094 9.506 14.656 hybrid contribution -0.615 1.880 1.993 2.808 sum -1.773 -9.215 11.499 14.842 Atomic orbital electron populations 1.21197 0.80221 1.01888 1.00583 1.57682 1.14137 1.23542 1.88581 1.19215 0.92186 0.78944 0.97484 1.21606 1.36415 1.06703 0.92905 0.91704 1.24919 0.95342 0.96544 0.96851 1.69933 1.36712 1.15134 1.30714 0.86669 0.78024 0.79097 0.84934 1.19773 1.20677 1.20941 1.01777 0.73110 0.72638 0.72937 1.93528 1.67419 1.60402 1.76951 1.93571 1.40768 1.85254 1.76430 1.58279 1.29445 1.64947 1.31795 1.21440 0.85700 0.99184 0.92344 1.22885 0.97633 0.95236 0.94677 1.61874 1.16740 1.45629 1.01836 1.21823 0.94983 1.00274 0.89148 1.21367 1.01290 1.04457 0.87993 1.23548 0.82382 0.74141 0.87578 1.90732 1.23296 1.46655 1.79894 1.84548 1.42470 1.78976 1.27018 1.22435 0.91020 1.00200 0.94896 1.21364 0.91897 0.94034 0.92090 0.93773 0.93091 0.90943 0.94520 0.93111 0.92585 0.91453 0.88144 0.91072 0.90289 0.93561 0.89928 0.86625 0.87292 0.73264 0.93614 0.90092 0.89555 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.31 59.85 0.62 2.42 16 2 N -1.00 -20.02 3.23 -123.05 -0.40 -20.41 16 3 C 0.24 5.83 5.41 -5.19 -0.03 5.80 16 4 C -0.54 -13.18 9.16 -34.44 -0.32 -13.50 16 5 H 0.06 1.53 5.65 -52.49 -0.30 1.23 16 6 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 8 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 S 2.79 54.31 6.07 -107.50 -0.65 53.66 16 13 O -1.00 -20.02 15.99 -57.17 -0.91 -20.94 16 14 O -0.98 -22.10 15.46 -57.17 -0.88 -22.99 16 15 N -1.01 -16.39 3.38 -112.97 -0.38 -16.78 16 16 C 0.14 2.19 6.56 -3.36 -0.02 2.17 16 17 C 0.02 0.36 5.48 -3.46 -0.02 0.34 16 18 N -0.54 -6.89 4.63 -234.02 -1.08 -7.98 16 19 C 0.07 0.80 4.25 -3.83 -0.02 0.78 16 20 C -0.11 -1.16 5.74 -27.88 -0.16 -1.32 16 21 C 0.48 5.39 8.33 36.01 0.30 5.68 16 22 O -0.52 -7.44 16.74 -18.75 -0.31 -7.75 16 23 O -0.52 -4.51 13.42 -39.25 -0.53 -5.04 16 24 C 0.04 0.55 5.62 -3.70 -0.02 0.53 16 25 C 0.13 1.76 6.53 -3.60 -0.02 1.73 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 29 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 30 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.80 7.21 -51.93 -0.37 1.43 16 34 H 0.07 1.29 5.69 -51.93 -0.30 0.99 16 35 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 36 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.11 6.40 -51.93 -0.33 0.78 16 40 H 0.41 1.87 9.10 45.56 0.41 2.29 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.83 7.99 -51.93 -0.41 0.41 16 43 H 0.09 1.10 7.22 -51.93 -0.37 0.73 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -32.88 367.25 -9.37 -42.25 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.68 Total: 3.10 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.21 Total: 6.28 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.13 Total: -68.93 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -2.64 Total: -56.72 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.65 Total: 53.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.88 -9.37 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.397 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds