Wall clock time and date at job start Tue Mar 31 2020 18:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99999 * 2 1 4 4 C 1.50701 * 109.46992 * 85.00120 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 S 1.65593 * 119.99605 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40784 * 23.53826 * 12 2 1 14 14 O 1.42105 * 106.40278 * 156.45824 * 12 2 1 15 15 N 1.65598 * 107.21993 * 269.99784 * 12 2 1 16 16 C 1.47078 * 120.88135 * 269.72651 * 15 12 2 17 17 C 1.53698 * 108.27941 * 128.75484 * 16 15 12 18 18 N 1.46897 * 109.25714 * 54.07702 * 17 16 15 19 19 C 1.46900 * 110.99703 * 172.60714 * 18 17 16 20 20 C 1.52996 * 109.47478 * 294.30610 * 19 18 17 21 21 C 1.50707 * 109.47000 * 180.02562 * 20 19 18 22 22 O 1.20820 * 119.99962 * 359.97438 * 21 20 19 23 23 O 1.34229 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.46894 * 111.27256 * 296.76024 * 18 17 16 25 25 C 1.47082 * 120.88227 * 90.00099 * 15 12 2 26 26 H 1.09000 * 109.47587 * 89.99812 * 1 2 3 27 27 H 1.08997 * 109.47205 * 209.99963 * 1 2 3 28 28 H 1.09003 * 109.46728 * 329.99785 * 1 2 3 29 29 H 1.09002 * 109.47391 * 325.00111 * 3 2 1 30 30 H 1.09001 * 109.46813 * 205.00167 * 3 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.63004 * 248.51935 * 16 15 12 33 33 H 1.09004 * 109.63267 * 9.10028 * 16 15 12 34 34 H 1.09007 * 109.64613 * 294.07652 * 17 16 15 35 35 H 1.09001 * 109.42158 * 173.95090 * 17 16 15 36 36 H 1.09004 * 109.46763 * 54.31266 * 19 18 17 37 37 H 1.09003 * 109.46904 * 174.30260 * 19 18 17 38 38 H 1.08994 * 109.47279 * 299.99735 * 20 19 18 39 39 H 1.08994 * 109.47320 * 60.00211 * 20 19 18 40 40 H 0.96704 * 116.99844 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.49134 * 303.14872 * 24 18 17 42 42 H 1.08996 * 109.49410 * 183.06542 * 24 18 17 43 43 H 1.09001 * 109.62774 * 350.89792 * 25 15 12 44 44 H 1.09002 * 109.62856 * 111.47888 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5034 3.6468 0.6707 8 14 3.1797 3.5658 3.4210 9 1 2.5322 2.6060 4.3509 10 1 4.6208 3.6860 3.7588 11 1 2.5289 4.8946 3.5482 12 16 2.2929 -1.4341 -0.0006 13 8 1.4112 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8594 1.5809 16 6 3.7458 -1.4272 2.3003 17 6 3.3119 -0.7754 3.6229 18 7 2.4493 -1.7068 4.3619 19 6 2.1543 -1.1963 5.7074 20 6 3.4435 -1.1516 6.5300 21 6 3.1406 -0.6284 7.9105 22 8 2.0098 -0.3222 8.2059 23 8 4.1273 -0.5026 8.8119 24 6 1.2116 -1.9879 3.6224 25 6 1.5566 -2.6843 2.3017 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6502 2.0043 -0.5894 30 1 3.1858 1.1176 -0.4343 31 1 3.9669 4.4805 0.8473 32 1 4.3790 -2.2906 2.5047 33 1 4.2927 -0.7034 1.6960 34 1 2.7623 0.1430 3.4159 35 1 4.1942 -0.5449 4.2200 36 1 1.7366 -0.1923 5.6315 37 1 1.4344 -1.8532 6.1955 38 1 3.8610 -2.1555 6.6059 39 1 4.1634 -0.4946 6.0419 40 1 3.8844 -0.1623 9.6839 41 1 0.6913 -1.0527 3.4153 42 1 0.5706 -2.6368 4.2192 43 1 0.6553 -2.7921 1.6982 44 1 1.9833 -3.6663 2.5061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:25 Heat of formation + Delta-G solvation = -179.318504 kcal Electronic energy + Delta-G solvation = -29276.306960 eV Core-core repulsion = 25161.688249 eV Total energy + Delta-G solvation = -4114.618711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30534 -39.87251 -38.35798 -37.21223 -37.17777 -36.88350 -36.01536 -34.48499 -32.40490 -31.83821 -29.64074 -27.67372 -26.76566 -24.81799 -24.46304 -24.14991 -21.84581 -21.34718 -19.81155 -19.17764 -18.78776 -18.60987 -18.21600 -17.61425 -17.35354 -17.19458 -16.54109 -16.02438 -15.81253 -15.70910 -15.52516 -15.20372 -15.05894 -14.91801 -14.30636 -14.10085 -13.98929 -13.88439 -13.51346 -13.39278 -13.31755 -13.06214 -13.02287 -12.95905 -12.83538 -12.58413 -12.53670 -12.44223 -12.38014 -12.19585 -11.97733 -11.83578 -11.66854 -11.62787 -11.55776 -10.60168 -10.09417 -9.73663 -9.26622 -8.17474 -6.29357 -0.30627 1.19831 1.35841 1.39810 1.47952 1.95082 2.05460 2.38420 2.57927 3.03096 3.14968 3.37763 3.71662 3.75993 3.99233 4.08186 4.15542 4.32076 4.36059 4.44668 4.49932 4.52922 4.62611 4.69419 4.74963 4.78417 4.82894 4.87240 4.94370 5.04082 5.04654 5.13946 5.18353 5.32168 5.48133 5.61199 5.63466 5.78418 5.96794 6.01337 6.04356 6.12041 6.83252 6.98495 7.39936 8.91411 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.005292 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.443045 B = 5289.908568 C = 7060.863768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.005 6.005 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.928 5.928 8 Si 0.945 3.055 9 H -0.260 1.260 10 H -0.276 1.276 11 H -0.288 1.288 12 S 2.797 3.203 13 O -1.003 7.003 14 O -1.013 7.013 15 N -1.003 6.003 16 C 0.137 3.863 17 C 0.029 3.971 18 N -0.524 5.524 19 C 0.069 3.931 20 C -0.110 4.110 21 C 0.487 3.513 22 O -0.556 6.556 23 O -0.512 6.512 24 C 0.043 3.957 25 C 0.127 3.873 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.016 0.984 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.019 0.981 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.427 0.573 41 H 0.027 0.973 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -12.111 13.056 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.846 5.846 3 C 0.135 3.865 4 C -0.567 4.567 5 H 0.094 0.906 6 C -0.182 4.182 7 N -0.568 5.568 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.214 1.214 12 S 2.807 3.193 13 O -0.987 6.987 14 O -0.997 6.997 15 N -0.844 5.844 16 C 0.011 3.989 17 C -0.100 4.100 18 N -0.248 5.248 19 C -0.059 4.059 20 C -0.148 4.148 21 C 0.331 3.669 22 O -0.447 6.447 23 O -0.326 6.326 24 C -0.086 4.086 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.037 0.963 37 H 0.112 0.888 38 H 0.159 0.841 39 H 0.130 0.870 40 H 0.289 0.711 41 H 0.045 0.955 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.460 -12.950 11.958 17.687 hybrid contribution -0.543 2.368 1.262 2.738 sum -2.003 -10.582 13.220 17.051 Atomic orbital electron populations 1.21417 0.78238 1.03129 1.01733 1.57613 1.15529 1.22274 1.89143 1.18769 0.90797 0.80114 0.96864 1.21842 1.35221 1.06336 0.93291 0.90646 1.25666 0.95282 0.96955 1.00313 1.70063 1.38160 1.15746 1.32867 0.85719 0.78110 0.78294 0.80836 1.18425 1.20174 1.21443 1.01267 0.72171 0.72265 0.73617 1.93513 1.67355 1.60162 1.77685 1.93520 1.42634 1.85696 1.77892 1.58053 1.30359 1.65072 1.30897 1.21505 0.85603 0.99660 0.92091 1.22774 0.98388 0.94050 0.94811 1.61928 1.16630 1.44375 1.01906 1.21807 0.96260 0.98924 0.88916 1.21362 1.00262 1.05924 0.87250 1.23655 0.81973 0.73200 0.88061 1.90727 1.24815 1.48480 1.80665 1.84505 1.41536 1.78561 1.27977 1.22513 0.91135 0.99916 0.95037 1.21671 0.91553 0.94479 0.92108 0.92735 0.90462 0.91072 0.96549 0.96295 0.92662 0.88759 0.91051 0.94495 0.88371 0.96284 0.88837 0.84134 0.87030 0.71135 0.95472 0.86998 0.88877 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.28 10.31 127.77 1.32 4.60 16 2 N -1.00 -40.65 3.23 -543.22 -1.75 -42.40 16 3 C 0.26 12.79 5.41 85.63 0.46 13.25 16 4 C -0.53 -26.31 9.16 25.60 0.23 -26.07 16 5 H 0.08 3.56 5.65 -2.91 -0.02 3.54 16 6 C 0.02 0.90 5.46 84.66 0.46 1.37 16 7 N -0.93 -52.73 13.29 21.45 0.28 -52.44 16 8 Si 0.94 40.93 29.54 68.60 2.03 42.95 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 S 2.80 108.53 6.07 -56.49 -0.34 108.18 16 13 O -1.00 -38.99 15.99 -128.00 -2.05 -41.04 16 14 O -1.01 -47.04 15.46 -128.00 -1.98 -49.02 16 15 N -1.00 -31.29 3.38 -511.31 -1.73 -33.02 16 16 C 0.14 4.15 6.56 86.50 0.57 4.72 16 17 C 0.03 0.81 5.48 86.54 0.47 1.29 16 18 N -0.52 -11.99 4.63 -894.32 -4.14 -16.13 16 19 C 0.07 1.50 4.25 86.30 0.37 1.87 16 20 C -0.11 -1.93 5.74 29.85 0.17 -1.76 16 21 C 0.49 9.70 8.33 71.24 0.59 10.29 16 22 O -0.56 -15.05 16.74 21.98 0.37 -14.68 16 23 O -0.51 -7.44 13.42 -51.40 -0.69 -8.13 16 24 C 0.04 0.96 5.62 86.39 0.49 1.45 16 25 C 0.13 3.00 6.53 86.35 0.56 3.56 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.02 0.87 8.11 -2.39 -0.02 0.85 16 30 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.60 7.21 -2.39 -0.02 2.58 16 34 H 0.04 1.31 5.69 -2.38 -0.01 1.29 16 35 H 0.10 2.35 6.16 -2.39 -0.01 2.33 16 36 H 0.02 0.52 8.08 -2.39 -0.02 0.50 16 37 H 0.09 1.85 7.93 -2.39 -0.02 1.83 16 38 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 1.93 6.40 -2.39 -0.02 1.91 16 40 H 0.43 2.76 9.10 -74.05 -0.67 2.09 16 41 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.11 1.84 7.99 -2.39 -0.02 1.82 16 43 H 0.09 2.10 7.22 -2.39 -0.02 2.08 16 44 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -72.03 367.25 -3.95 -75.98 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.35 Total: 15.17 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.70 Total: 14.56 kcal Atomic # 7 Polarization: -136.65 SS G_CDS: -7.33 Total: -143.99 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.35 Total: -112.87 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 108.53 SS G_CDS: -0.34 Total: 108.18 kcal Total: -72.03 -3.95 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.337 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds