Wall clock time and date at job start Tue Mar 31 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47071 * 2 1 4 4 C 1.34234 * 116.99693 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99790 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.78292 * 357.87481 * 6 4 3 8 8 C 1.53697 * 109.70229 * 118.61161 * 6 4 3 9 9 N 1.46894 * 109.25927 * 173.68726 * 8 6 4 10 10 C 1.46905 * 111.27129 * 296.76341 * 9 8 6 11 11 C 1.53241 * 109.34047 * 63.10063 * 10 9 8 12 12 N 1.47077 * 108.52000 * 306.17181 * 11 10 9 13 13 S 1.65601 * 120.88037 * 231.18532 * 12 11 10 14 14 O 1.42105 * 106.40170 * 193.84636 * 13 12 11 15 15 O 1.42097 * 106.40350 * 60.92802 * 13 12 11 16 16 N 1.65601 * 107.21775 * 307.38539 * 13 12 11 17 17 C 1.46496 * 119.99865 * 275.69631 * 16 13 12 18 18 C 1.46503 * 119.99810 * 95.69612 * 16 13 12 19 19 C 1.50700 * 109.46960 * 95.09858 * 18 16 13 20 20 H 1.07996 * 120.00030 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00090 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47309 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47194 * 299.99777 * 23 21 19 26 26 H 1.48497 * 109.47164 * 60.00257 * 23 21 19 27 27 H 1.09002 * 109.46524 * 60.00630 * 1 2 3 28 28 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47282 * 300.00467 * 1 2 3 30 30 H 1.09002 * 109.47282 * 239.99533 * 2 1 3 31 31 H 1.09003 * 109.47025 * 119.99950 * 2 1 3 32 32 H 1.09005 * 109.64398 * 53.68659 * 8 6 4 33 33 H 1.08995 * 109.44628 * 293.57252 * 8 6 4 34 34 H 1.00900 * 111.00445 * 172.61284 * 9 8 6 35 35 H 1.09001 * 109.48768 * 303.14379 * 10 9 8 36 36 H 1.08995 * 109.51627 * 183.07796 * 10 9 8 37 37 H 1.08995 * 109.62441 * 186.46511 * 11 10 9 38 38 H 1.08998 * 109.62763 * 65.88235 * 11 10 9 39 39 H 1.09005 * 109.47138 * 269.99499 * 17 16 13 40 40 H 1.08999 * 109.47375 * 30.00139 * 17 16 13 41 41 H 1.09001 * 109.47015 * 150.00198 * 17 16 13 42 42 H 1.09000 * 109.46734 * 335.09812 * 18 16 13 43 43 H 1.09001 * 109.46655 * 215.09838 * 18 16 13 44 44 H 0.97007 * 120.00051 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.1147 3.6700 -0.0389 8 6 4.7586 3.1520 1.2706 9 7 5.4369 4.4524 1.1896 10 6 6.3841 4.4905 0.0673 11 6 5.6175 4.3278 -1.2495 12 7 4.8001 3.1079 -1.1666 13 16 4.8630 1.9600 -2.3586 14 8 3.7493 1.1026 -2.1491 15 8 6.2052 1.4951 -2.3975 16 7 4.5938 2.7330 -3.7982 17 6 3.2230 2.9862 -4.2485 18 6 5.7266 3.1636 -4.6214 19 6 6.0239 2.1101 -5.6573 20 1 5.4288 1.2098 -5.6980 21 6 7.0555 2.2958 -6.5529 22 7 7.7798 3.3924 -6.5036 23 14 7.4245 0.9898 -7.8365 24 1 8.5719 1.4268 -8.6718 25 1 7.7627 -0.2879 -7.1596 26 1 6.2318 0.7925 -8.6989 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.5014 2.3591 1.3580 33 1 4.1053 3.1362 2.1429 34 1 5.8977 4.6747 2.0593 35 1 7.1043 3.6789 0.1716 36 1 6.9097 5.4453 0.0667 37 1 6.3232 4.2403 -2.0755 38 1 4.9714 5.1916 -1.4061 39 1 2.8750 2.1430 -4.8452 40 1 2.5732 3.1112 -3.3823 41 1 3.2008 3.8928 -4.8531 42 1 6.6020 3.3076 -3.9880 43 1 5.4790 4.1018 -5.1179 44 1 8.5054 3.5232 -7.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645872681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:33 Heat of formation + Delta-G solvation = -133.396852 kcal Electronic energy + Delta-G solvation = -29746.005030 eV Core-core repulsion = 25633.377631 eV Total energy + Delta-G solvation = -4112.627399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61956 -38.41381 -36.83458 -36.21391 -35.55658 -35.10835 -33.61277 -32.47277 -32.02172 -31.20291 -27.83276 -26.37615 -25.15396 -24.76044 -23.07203 -22.33854 -21.39828 -20.70804 -18.72463 -17.93090 -17.28958 -16.85594 -16.49640 -16.43478 -15.91974 -15.77737 -15.59999 -14.91459 -14.82258 -14.42590 -14.05790 -13.97006 -13.60036 -13.45853 -13.23519 -13.06239 -12.68867 -12.45950 -12.32453 -12.11362 -11.93379 -11.89072 -11.56236 -11.50970 -11.41750 -11.24153 -11.19398 -11.09073 -10.86279 -10.71345 -10.49065 -10.31617 -10.22453 -10.03095 -9.81946 -9.28998 -8.61275 -8.45975 -8.13367 -6.09113 -4.13208 1.00819 2.25714 2.59919 3.32937 3.35361 3.36366 3.41824 3.95694 4.05138 4.42867 4.51319 4.66261 4.79088 4.92768 4.98467 5.05214 5.09267 5.19981 5.25730 5.26465 5.36170 5.38829 5.47660 5.57205 5.63248 5.66921 5.85978 5.92725 5.95990 5.98342 6.02757 6.21159 6.36641 6.59548 6.62309 6.68040 7.09388 7.13276 7.32613 7.53782 7.87406 7.87995 8.16517 8.88438 9.52195 10.99554 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.004709 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.304008 B = 5944.069999 C = 7213.879389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.346 6.346 4 C 0.473 3.527 5 O -0.500 6.500 6 C 0.171 3.829 7 H 0.110 0.890 8 C 0.057 3.943 9 N -0.682 5.682 10 C 0.041 3.959 11 C 0.131 3.869 12 N -1.008 6.008 13 S 2.780 3.220 14 O -0.981 6.981 15 O -0.953 6.953 16 N -0.995 5.995 17 C 0.110 3.890 18 C 0.254 3.746 19 C -0.532 4.532 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.350 0.650 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 3.644 16.124 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.007 4.007 3 O -0.262 6.262 4 C 0.314 3.686 5 O -0.388 6.388 6 C 0.062 3.938 7 H 0.127 0.873 8 C -0.074 4.074 9 N -0.314 5.314 10 C -0.090 4.090 11 C 0.006 3.994 12 N -0.849 5.849 13 S 2.790 3.210 14 O -0.965 6.965 15 O -0.935 6.935 16 N -0.838 5.838 17 C -0.036 4.036 18 C 0.132 3.868 19 C -0.571 4.571 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.210 1.210 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.007 2.784 15.765 19.428 hybrid contribution 0.954 -0.989 -0.577 1.491 sum -10.053 1.794 15.188 18.302 Atomic orbital electron populations 1.21801 0.92988 1.02720 1.03263 1.22996 0.94673 0.80065 1.03004 1.86333 1.23420 1.32712 1.83777 1.22868 0.81830 0.91434 0.72485 1.90683 1.60319 1.42804 1.44954 1.20456 0.93644 0.91881 0.87799 0.87260 1.22193 0.97901 0.91662 0.95644 1.60136 1.33837 1.29797 1.07635 1.22352 0.93519 1.02122 0.91000 1.21531 0.93594 0.86436 0.97886 1.58660 1.54271 1.37696 1.34233 1.02236 0.73902 0.72980 0.71906 1.93468 1.54766 1.63300 1.84994 1.93615 1.36798 1.77410 1.85718 1.57646 1.13359 1.77377 1.35453 1.21206 0.81378 1.01773 0.99263 1.19163 0.81549 0.96117 0.89965 1.21424 1.15815 1.04772 1.15114 0.92290 1.24914 0.95506 0.95790 0.97638 1.69898 1.20282 1.25803 1.37418 0.86572 0.77874 0.82056 0.81089 1.21036 1.19972 1.20101 0.91352 0.90447 0.91855 0.90076 0.91802 0.93035 0.89098 0.83136 0.93658 0.89018 0.88630 0.90245 0.93012 0.93083 0.91270 0.94335 0.94411 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.07 0.88 6.19 37.16 0.23 1.11 16 3 O -0.35 -5.21 10.16 -44.30 -0.45 -5.66 16 4 C 0.47 7.92 4.08 36.01 0.15 8.06 16 5 O -0.50 -10.04 14.24 -26.87 -0.38 -10.43 16 6 C 0.17 2.42 3.53 -68.40 -0.24 2.18 16 7 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.06 0.66 5.98 -3.47 -0.02 0.64 16 9 N -0.68 -6.86 6.82 -113.24 -0.77 -7.63 16 10 C 0.04 0.47 6.70 -3.70 -0.02 0.44 16 11 C 0.13 1.83 6.71 -3.60 -0.02 1.80 16 12 N -1.01 -16.62 3.36 -107.17 -0.36 -16.98 16 13 S 2.78 59.80 4.90 -107.50 -0.53 59.27 16 14 O -0.98 -21.59 12.34 -69.33 -0.86 -22.45 16 15 O -0.95 -24.74 16.91 -57.17 -0.97 -25.71 16 16 N -1.00 -21.22 3.19 -123.05 -0.39 -21.61 16 17 C 0.11 1.93 10.33 59.84 0.62 2.55 16 18 C 0.25 6.37 5.03 -5.19 -0.03 6.35 16 19 C -0.53 -15.17 9.38 -34.44 -0.32 -15.49 16 20 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 22 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 23 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.35 2.62 8.90 -39.29 -0.35 2.27 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.49 6.89 -51.93 -0.36 1.13 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.76 7.93 -51.93 -0.41 0.35 16 41 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 42 H 0.04 1.02 6.53 -51.93 -0.34 0.68 16 43 H 0.04 0.94 7.97 -51.93 -0.41 0.53 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -36.16 369.57 -9.70 -45.86 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.89 Total: -0.36 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.62 Total: 8.35 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.79 Total: -71.47 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -2.66 Total: -64.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 59.80 SS G_CDS: -0.53 Total: 59.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.16 -9.70 -45.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645872681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.535 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds