Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47071 * 2 1 4 4 C 1.34234 * 116.99693 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99790 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.78292 * 357.87481 * 6 4 3 8 8 C 1.53697 * 109.70229 * 118.61161 * 6 4 3 9 9 N 1.46894 * 109.25927 * 173.68726 * 8 6 4 10 10 C 1.46905 * 111.27129 * 296.76341 * 9 8 6 11 11 C 1.53241 * 109.34047 * 63.10063 * 10 9 8 12 12 N 1.47077 * 108.52000 * 306.17181 * 11 10 9 13 13 S 1.65601 * 120.88037 * 231.18532 * 12 11 10 14 14 O 1.42105 * 106.40170 * 193.84636 * 13 12 11 15 15 O 1.42097 * 106.40350 * 60.92802 * 13 12 11 16 16 N 1.65601 * 107.21775 * 307.38539 * 13 12 11 17 17 C 1.46496 * 119.99865 * 275.69631 * 16 13 12 18 18 C 1.46503 * 119.99810 * 95.69612 * 16 13 12 19 19 C 1.50700 * 109.46960 * 95.09858 * 18 16 13 20 20 H 1.07996 * 120.00030 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00090 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47309 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47194 * 299.99777 * 23 21 19 26 26 H 1.48497 * 109.47164 * 60.00257 * 23 21 19 27 27 H 1.09002 * 109.46524 * 60.00630 * 1 2 3 28 28 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47282 * 300.00467 * 1 2 3 30 30 H 1.09002 * 109.47282 * 239.99533 * 2 1 3 31 31 H 1.09003 * 109.47025 * 119.99950 * 2 1 3 32 32 H 1.09005 * 109.64398 * 53.68659 * 8 6 4 33 33 H 1.08995 * 109.44628 * 293.57252 * 8 6 4 34 34 H 1.00900 * 111.00445 * 172.61284 * 9 8 6 35 35 H 1.09001 * 109.48768 * 303.14379 * 10 9 8 36 36 H 1.08995 * 109.51627 * 183.07796 * 10 9 8 37 37 H 1.08995 * 109.62441 * 186.46511 * 11 10 9 38 38 H 1.08998 * 109.62763 * 65.88235 * 11 10 9 39 39 H 1.09005 * 109.47138 * 269.99499 * 17 16 13 40 40 H 1.08999 * 109.47375 * 30.00139 * 17 16 13 41 41 H 1.09001 * 109.47015 * 150.00198 * 17 16 13 42 42 H 1.09000 * 109.46734 * 335.09812 * 18 16 13 43 43 H 1.09001 * 109.46655 * 215.09838 * 18 16 13 44 44 H 0.97007 * 120.00051 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.1147 3.6700 -0.0389 8 6 4.7586 3.1520 1.2706 9 7 5.4369 4.4524 1.1896 10 6 6.3841 4.4905 0.0673 11 6 5.6175 4.3278 -1.2495 12 7 4.8001 3.1079 -1.1666 13 16 4.8630 1.9600 -2.3586 14 8 3.7493 1.1026 -2.1491 15 8 6.2052 1.4951 -2.3975 16 7 4.5938 2.7330 -3.7982 17 6 3.2230 2.9862 -4.2485 18 6 5.7266 3.1636 -4.6214 19 6 6.0239 2.1101 -5.6573 20 1 5.4288 1.2098 -5.6980 21 6 7.0555 2.2958 -6.5529 22 7 7.7798 3.3924 -6.5036 23 14 7.4245 0.9898 -7.8365 24 1 8.5719 1.4268 -8.6718 25 1 7.7627 -0.2879 -7.1596 26 1 6.2318 0.7925 -8.6989 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.5014 2.3591 1.3580 33 1 4.1053 3.1362 2.1429 34 1 5.8977 4.6747 2.0593 35 1 7.1043 3.6789 0.1716 36 1 6.9097 5.4453 0.0667 37 1 6.3232 4.2403 -2.0755 38 1 4.9714 5.1916 -1.4061 39 1 2.8750 2.1430 -4.8452 40 1 2.5732 3.1112 -3.3823 41 1 3.2008 3.8928 -4.8531 42 1 6.6020 3.3076 -3.9880 43 1 5.4790 4.1018 -5.1179 44 1 8.5054 3.5232 -7.1340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645872681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = -162.047616 kcal Electronic energy + Delta-G solvation = -29747.247420 eV Core-core repulsion = 25633.377631 eV Total energy + Delta-G solvation = -4113.869789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88929 -39.49990 -38.47694 -37.64281 -37.32086 -36.88295 -34.72345 -34.56379 -33.06828 -32.16701 -29.75195 -27.51065 -26.87956 -25.82337 -24.33236 -24.01860 -22.55087 -21.90348 -20.09380 -19.43102 -18.80180 -18.40536 -18.38480 -17.80009 -17.38140 -17.03408 -16.83436 -16.54541 -16.05263 -15.78259 -15.32548 -15.16732 -15.05980 -14.93096 -14.63317 -14.18170 -14.03410 -13.97209 -13.71294 -13.58029 -13.39370 -13.22479 -13.11821 -13.06852 -12.92747 -12.68391 -12.53905 -12.47714 -12.47576 -12.34739 -12.06406 -11.97705 -11.82636 -11.53499 -11.45902 -10.64048 -10.46917 -9.92579 -9.54176 -8.25562 -6.37580 -0.62504 0.96581 1.35318 1.38928 1.44655 1.46127 1.85750 2.34476 2.43855 3.05245 3.12829 3.28954 3.39697 3.61207 3.74966 3.95759 4.04016 4.08112 4.12950 4.14372 4.24883 4.41806 4.47394 4.54888 4.61574 4.65353 4.75867 4.83474 4.84428 4.95536 4.97526 4.98822 5.09067 5.15408 5.27552 5.36741 5.47168 5.63499 5.73886 5.83864 6.04396 6.40506 6.60952 6.68743 7.31115 8.81971 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.004709 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.304008 B = 5944.069999 C = 7213.879389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 O -0.341 6.341 4 C 0.467 3.533 5 O -0.542 6.542 6 C 0.166 3.834 7 H 0.144 0.856 8 C 0.060 3.940 9 N -0.667 5.667 10 C 0.044 3.956 11 C 0.122 3.878 12 N -1.002 6.002 13 S 2.788 3.212 14 O -0.994 6.994 15 O -1.010 7.010 16 N -0.999 5.999 17 C 0.103 3.897 18 C 0.269 3.731 19 C -0.558 4.558 20 H 0.045 0.955 21 C 0.017 3.983 22 N -0.918 5.918 23 Si 0.953 3.047 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.127 0.873 34 H 0.369 0.631 35 H 0.022 0.978 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.040 0.960 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 5.116 17.252 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 O -0.257 6.257 4 C 0.311 3.689 5 O -0.432 6.432 6 C 0.058 3.942 7 H 0.162 0.838 8 C -0.072 4.072 9 N -0.301 5.301 10 C -0.087 4.087 11 C -0.002 4.002 12 N -0.847 5.847 13 S 2.799 3.201 14 O -0.977 6.977 15 O -0.993 6.993 16 N -0.841 5.841 17 C -0.042 4.042 18 C 0.146 3.854 19 C -0.598 4.598 20 H 0.063 0.937 21 C -0.183 4.183 22 N -0.557 5.557 23 Si 0.777 3.223 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.145 0.855 34 H 0.191 0.809 35 H 0.041 0.959 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.721 4.272 16.901 21.580 hybrid contribution 1.408 -1.440 -0.833 2.179 sum -11.313 2.832 16.068 19.854 Atomic orbital electron populations 1.21815 0.89618 1.04387 1.04008 1.23252 0.97307 0.79207 1.01941 1.86347 1.22498 1.33701 1.83132 1.23496 0.82108 0.92087 0.71241 1.90668 1.61284 1.44430 1.46833 1.20916 0.94538 0.91029 0.87675 0.83842 1.22239 0.97800 0.91671 0.95461 1.60123 1.33367 1.28423 1.08174 1.22339 0.93109 1.02953 0.90337 1.21804 0.93745 0.85988 0.98671 1.58227 1.55183 1.37533 1.33708 1.01638 0.72639 0.73351 0.72439 1.93445 1.54557 1.64436 1.85277 1.93542 1.39803 1.79227 1.86704 1.57482 1.13934 1.77264 1.35450 1.21455 0.79716 1.02243 1.00802 1.18762 0.82212 0.95240 0.89213 1.21759 1.16291 1.05219 1.16503 0.93659 1.25687 0.95272 0.97814 0.99515 1.69970 1.20562 1.27033 1.38154 0.85699 0.78571 0.79088 0.78942 1.19466 1.20744 1.18681 0.91606 0.88354 0.90016 0.93175 0.90995 0.95366 0.85511 0.80938 0.95920 0.85867 0.91071 0.87276 0.93883 0.90109 0.89461 0.96411 0.94254 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.06 1.47 6.19 71.98 0.45 1.91 16 3 O -0.34 -9.86 10.16 -46.64 -0.47 -10.34 16 4 C 0.47 15.42 4.08 71.24 0.29 15.71 16 5 O -0.54 -22.33 14.24 29.73 0.42 -21.91 16 6 C 0.17 4.39 3.53 44.37 0.16 4.55 16 7 H 0.14 2.85 8.14 -2.38 -0.02 2.84 16 8 C 0.06 1.24 5.98 86.54 0.52 1.76 16 9 N -0.67 -11.32 6.82 -512.19 -3.49 -14.82 16 10 C 0.04 0.93 6.70 86.38 0.58 1.51 16 11 C 0.12 3.29 6.71 86.35 0.58 3.87 16 12 N -1.00 -32.55 3.36 -492.97 -1.66 -34.20 16 13 S 2.79 123.29 4.90 -56.49 -0.28 123.02 16 14 O -0.99 -44.76 12.34 -116.37 -1.44 -46.20 16 15 O -1.01 -55.34 16.91 -128.00 -2.16 -57.50 16 16 N -1.00 -43.27 3.19 -543.22 -1.73 -45.01 16 17 C 0.10 3.53 10.33 127.77 1.32 4.85 16 18 C 0.27 13.89 5.03 85.63 0.43 14.32 16 19 C -0.56 -32.67 9.38 25.60 0.24 -32.43 16 20 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 21 C 0.02 1.01 5.46 84.65 0.46 1.47 16 22 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 23 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.03 0.73 8.00 -2.38 -0.02 0.71 16 33 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.37 4.20 8.90 -89.69 -0.80 3.41 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.28 6.89 -2.39 -0.02 2.27 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 2.26 7.93 -2.39 -0.02 2.24 16 41 H 0.09 2.66 7.94 -2.39 -0.02 2.64 16 42 H 0.02 0.99 6.53 -2.39 -0.02 0.98 16 43 H 0.04 1.99 7.97 -2.39 -0.02 1.98 16 44 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -81.77 369.57 -2.53 -84.30 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.21 Total: 12.83 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.76 Total: 15.91 kcal Atomic # 7 Polarization: -140.97 SS G_CDS: -6.60 Total: -147.57 kcal Atomic # 8 Polarization: -132.30 SS G_CDS: -3.65 Total: -135.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 123.29 SS G_CDS: -0.28 Total: 123.02 kcal Total: -81.77 -2.53 -84.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645872681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.744 kcal (2) G-P(sol) polarization free energy of solvation -81.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds