Wall clock time and date at job start Tue Mar 31 2020 18:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34632 * 116.99952 * 2 1 4 4 O 1.21514 * 120.00049 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99929 * 180.02562 * 3 2 1 6 6 C 1.48217 * 119.97368 * 0.02562 * 5 3 2 7 7 C 1.47198 * 110.36074 * 102.48563 * 6 5 3 8 8 C 1.53792 * 111.83705 * 58.26011 * 7 6 5 9 9 N 1.43466 * 107.96548 * 281.71060 * 8 7 6 10 10 S 1.65600 * 118.93736 * 273.62596 * 9 8 7 11 11 O 1.42098 * 106.40246 * 17.84411 * 10 9 8 12 12 O 1.42105 * 106.40404 * 150.76238 * 10 9 8 13 13 N 1.65598 * 107.22089 * 264.30408 * 10 9 8 14 14 C 1.46502 * 120.00147 * 275.18199 * 13 10 9 15 15 C 1.46498 * 119.99984 * 95.17833 * 13 10 9 16 16 C 1.50703 * 109.46953 * 95.00634 * 15 13 10 17 17 H 1.08004 * 119.99945 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99999 * 180.02562 * 16 15 13 19 19 N 1.31508 * 120.00058 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47198 * 89.99917 * 20 18 16 22 22 H 1.48501 * 109.47115 * 209.99646 * 20 18 16 23 23 H 1.48497 * 109.47380 * 329.99400 * 20 18 16 24 24 C 1.48850 * 122.12343 * 93.64722 * 9 8 7 25 25 C 1.43624 * 119.97406 * 179.97438 * 5 3 2 26 26 H 1.09007 * 109.46963 * 60.00447 * 1 2 3 27 27 H 1.09006 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47532 * 300.00048 * 1 2 3 29 29 H 1.08999 * 109.32277 * 222.73018 * 6 5 3 30 30 H 1.08999 * 109.32218 * 342.37214 * 6 5 3 31 31 H 1.09005 * 108.98224 * 297.67529 * 7 6 5 32 32 H 1.08999 * 109.03223 * 178.88594 * 7 6 5 33 33 H 1.09000 * 109.76647 * 162.09063 * 8 7 6 34 34 H 1.09004 * 109.76426 * 41.32563 * 8 7 6 35 35 H 1.08996 * 109.47145 * 94.81381 * 14 13 10 36 36 H 1.08991 * 109.47194 * 214.82016 * 14 13 10 37 37 H 1.09000 * 109.46821 * 334.82124 * 14 13 10 38 38 H 1.09000 * 109.47237 * 214.99748 * 15 13 10 39 39 H 1.08992 * 109.47361 * 335.00374 * 15 13 10 40 40 H 0.97004 * 120.00082 * 180.02562 * 19 18 16 41 41 H 1.09009 * 109.48073 * 80.58194 * 24 9 8 42 42 H 1.08996 * 109.48301 * 200.60927 * 24 9 8 43 43 H 1.08996 * 108.87591 * 149.91024 * 25 5 3 44 44 H 1.08994 * 108.79152 * 31.41384 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.2158 0.0267 -0.0017 7 6 4.7442 -0.2397 -1.3494 8 6 5.6082 0.9233 -1.8653 9 7 4.7279 1.9630 -2.3150 10 16 4.1546 1.9117 -3.8677 11 8 4.3481 0.5797 -4.3231 12 8 2.8849 2.5495 -3.8480 13 7 5.1444 2.8688 -4.7877 14 6 4.9054 4.3123 -4.8617 15 6 6.2592 2.2721 -5.5275 16 6 5.8257 1.9819 -6.9413 17 1 4.8202 2.2179 -7.2570 18 6 6.7124 1.4141 -7.8315 19 7 7.9366 1.1263 -7.4469 20 14 6.1748 1.0536 -9.5838 21 1 6.4554 2.2338 -10.4404 22 1 6.9227 -0.1212 -10.0993 23 1 4.7189 0.7616 -9.6047 24 6 4.3135 3.0867 -1.4310 25 6 4.0606 2.5501 -0.0011 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 5.0462 0.1349 0.6960 30 1 3.5898 -0.8096 0.3095 31 1 3.9096 -0.3926 -2.0337 32 1 5.3490 -1.1461 -1.3213 33 1 6.2290 0.5821 -2.6938 34 1 6.2404 1.2982 -1.0603 35 1 5.5264 4.8217 -4.1249 36 1 5.1567 4.6715 -5.8595 37 1 3.8549 4.5176 -4.6555 38 1 7.0996 2.9662 -5.5405 39 1 6.5619 1.3442 -5.0425 40 1 8.5606 0.7271 -8.0733 41 1 5.1033 3.8376 -1.4032 42 1 3.3987 3.5354 -1.8180 43 1 5.0160 2.4597 0.5157 44 1 3.4352 3.2626 0.5368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647077614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:17 Heat of formation + Delta-G solvation = -133.202495 kcal Electronic energy + Delta-G solvation = -29509.750157 eV Core-core repulsion = 25397.131186 eV Total energy + Delta-G solvation = -4112.618971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78286 -38.50918 -36.71990 -36.35140 -35.47134 -35.11861 -34.70741 -32.92096 -32.43443 -28.88280 -27.78203 -27.15878 -26.21389 -25.05304 -23.28078 -22.26399 -21.62686 -20.31311 -18.50634 -18.04282 -17.46119 -17.19478 -16.73381 -16.59615 -16.29660 -16.05228 -15.21012 -14.94425 -14.47010 -14.34391 -14.01376 -13.97030 -13.69112 -13.33070 -13.29843 -13.06542 -12.79204 -12.43157 -12.22477 -12.15219 -11.95818 -11.72930 -11.60136 -11.45425 -11.30044 -11.14271 -11.12426 -11.05409 -10.83575 -10.75584 -10.63791 -10.50940 -10.47285 -10.02680 -9.76021 -9.06213 -8.78679 -8.44510 -8.03985 -6.07320 -4.11318 1.20243 2.08084 2.76437 3.31105 3.37322 3.42999 3.46139 3.73696 4.08177 4.44246 4.69306 4.72686 4.81234 4.86508 5.00442 5.04959 5.13124 5.23221 5.27564 5.32104 5.37340 5.40729 5.52004 5.59379 5.62927 5.69535 5.72249 5.81162 6.00171 6.13818 6.15441 6.25048 6.34227 6.41770 6.55284 6.85080 7.17206 7.23007 7.40921 7.61618 7.90381 8.20131 8.20678 8.91135 9.54053 11.01220 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003726 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.536113 B = 7513.065419 C = 7574.386114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.647 3.353 4 O -0.567 6.567 5 N -0.583 5.583 6 C 0.121 3.879 7 C -0.169 4.169 8 C 0.130 3.870 9 N -1.006 6.006 10 S 2.774 3.226 11 O -0.961 6.961 12 O -0.994 6.994 13 N -0.997 5.997 14 C 0.095 3.905 15 C 0.258 3.742 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.095 3.905 25 C 0.124 3.876 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 0.213 19.122 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.401 3.599 4 O -0.456 6.456 5 N -0.322 5.322 6 C -0.001 4.001 7 C -0.209 4.209 8 C 0.004 3.996 9 N -0.844 5.844 10 S 2.783 3.217 11 O -0.944 6.944 12 O -0.978 6.978 13 N -0.840 5.840 14 C -0.052 4.052 15 C 0.135 3.865 16 C -0.570 4.570 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.031 4.031 25 C 0.000 4.000 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.199 -0.072 18.782 19.779 hybrid contribution 0.102 0.017 -1.027 1.032 sum -6.097 -0.055 17.755 18.773 Atomic orbital electron populations 1.23202 0.74551 1.03411 1.02783 1.86225 1.24090 1.31069 1.87034 1.18122 0.83318 0.82197 0.76265 1.90996 1.64206 1.34887 1.55489 1.46330 1.02056 1.08094 1.75724 1.20898 0.95478 0.85819 0.97890 1.21710 1.01705 1.00055 0.97438 1.20788 0.91605 0.86245 1.01001 1.57957 1.62611 1.33182 1.30677 1.02273 0.73465 0.73736 0.72244 1.93612 1.85997 1.35420 1.79420 1.93527 1.39701 1.77763 1.86784 1.57683 1.48259 1.17008 1.61031 1.21342 1.00159 0.80904 1.02804 1.19041 0.83226 0.93273 0.90911 1.21505 0.98648 1.41046 0.95806 0.92279 1.24917 0.94808 0.95166 0.99014 1.69913 1.04821 1.43061 1.35652 0.86524 0.78995 0.77902 0.84227 1.20565 1.20990 1.19712 1.22650 1.01143 0.88323 0.90978 1.21413 0.97871 0.84134 0.96621 0.91655 0.88023 0.91979 0.90304 0.89145 0.90843 0.89214 0.89320 0.90390 0.94205 0.90573 0.91674 0.94820 0.94333 0.92685 0.90313 0.88657 0.89621 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -4.84 9.23 -40.30 -0.37 -5.22 16 3 C 0.65 9.55 8.39 54.05 0.45 10.00 16 4 O -0.57 -9.83 15.67 -19.28 -0.30 -10.13 16 5 N -0.58 -7.08 2.46 -182.48 -0.45 -7.53 16 6 C 0.12 1.17 5.71 -5.88 -0.03 1.13 16 7 C -0.17 -2.02 5.52 -29.11 -0.16 -2.18 16 8 C 0.13 1.68 5.24 -5.24 -0.03 1.65 16 9 N -1.01 -15.30 2.83 -113.26 -0.32 -15.62 16 10 S 2.77 57.31 5.85 -107.50 -0.63 56.68 16 11 O -0.96 -23.02 14.95 -57.17 -0.85 -23.88 16 12 O -0.99 -22.29 15.40 -57.17 -0.88 -23.17 16 13 N -1.00 -21.16 3.23 -123.06 -0.40 -21.55 16 14 C 0.09 1.66 10.72 59.85 0.64 2.30 16 15 C 0.26 6.48 5.12 -5.19 -0.03 6.45 16 16 C -0.53 -15.07 9.38 -34.44 -0.32 -15.39 16 17 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 20 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.10 1.19 6.84 -1.79 -0.01 1.18 16 25 C 0.12 1.29 5.25 -4.61 -0.02 1.26 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.09 0.83 7.05 -51.93 -0.37 0.46 16 31 H 0.07 1.13 7.27 -51.93 -0.38 0.76 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.31 7.64 -51.93 -0.40 0.91 16 34 H 0.08 0.74 7.59 -51.93 -0.39 0.34 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.06 1.09 6.99 -51.93 -0.36 0.73 16 38 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.04 1.02 7.46 -51.93 -0.39 0.63 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 41 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.10 1.40 6.90 -51.93 -0.36 1.05 16 43 H 0.09 0.61 7.73 -51.93 -0.40 0.21 16 44 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -37.22 367.18 -8.27 -45.49 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.77 Total: -1.98 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 1.46 Total: 9.74 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.43 Total: -69.98 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -2.41 Total: -62.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -0.63 Total: 56.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.22 -8.27 -45.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647077614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.716 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds