Wall clock time and date at job start Tue Mar 31 2020 18:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34632 * 116.99952 * 2 1 4 4 O 1.21514 * 120.00049 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99929 * 180.02562 * 3 2 1 6 6 C 1.48217 * 119.97368 * 0.02562 * 5 3 2 7 7 C 1.47198 * 110.36074 * 102.48563 * 6 5 3 8 8 C 1.53792 * 111.83705 * 58.26011 * 7 6 5 9 9 N 1.43466 * 107.96548 * 281.71060 * 8 7 6 10 10 S 1.65600 * 118.93736 * 273.62596 * 9 8 7 11 11 O 1.42098 * 106.40246 * 17.84411 * 10 9 8 12 12 O 1.42105 * 106.40404 * 150.76238 * 10 9 8 13 13 N 1.65598 * 107.22089 * 264.30408 * 10 9 8 14 14 C 1.46502 * 120.00147 * 275.18199 * 13 10 9 15 15 C 1.46498 * 119.99984 * 95.17833 * 13 10 9 16 16 C 1.50703 * 109.46953 * 95.00634 * 15 13 10 17 17 H 1.08004 * 119.99945 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99999 * 180.02562 * 16 15 13 19 19 N 1.31508 * 120.00058 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47198 * 89.99917 * 20 18 16 22 22 H 1.48501 * 109.47115 * 209.99646 * 20 18 16 23 23 H 1.48497 * 109.47380 * 329.99400 * 20 18 16 24 24 C 1.48850 * 122.12343 * 93.64722 * 9 8 7 25 25 C 1.43624 * 119.97406 * 179.97438 * 5 3 2 26 26 H 1.09007 * 109.46963 * 60.00447 * 1 2 3 27 27 H 1.09006 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47532 * 300.00048 * 1 2 3 29 29 H 1.08999 * 109.32277 * 222.73018 * 6 5 3 30 30 H 1.08999 * 109.32218 * 342.37214 * 6 5 3 31 31 H 1.09005 * 108.98224 * 297.67529 * 7 6 5 32 32 H 1.08999 * 109.03223 * 178.88594 * 7 6 5 33 33 H 1.09000 * 109.76647 * 162.09063 * 8 7 6 34 34 H 1.09004 * 109.76426 * 41.32563 * 8 7 6 35 35 H 1.08996 * 109.47145 * 94.81381 * 14 13 10 36 36 H 1.08991 * 109.47194 * 214.82016 * 14 13 10 37 37 H 1.09000 * 109.46821 * 334.82124 * 14 13 10 38 38 H 1.09000 * 109.47237 * 214.99748 * 15 13 10 39 39 H 1.08992 * 109.47361 * 335.00374 * 15 13 10 40 40 H 0.97004 * 120.00082 * 180.02562 * 19 18 16 41 41 H 1.09009 * 109.48073 * 80.58194 * 24 9 8 42 42 H 1.08996 * 109.48301 * 200.60927 * 24 9 8 43 43 H 1.08996 * 108.87591 * 149.91024 * 25 5 3 44 44 H 1.08994 * 108.79152 * 31.41384 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.2158 0.0267 -0.0017 7 6 4.7442 -0.2397 -1.3494 8 6 5.6082 0.9233 -1.8653 9 7 4.7279 1.9630 -2.3150 10 16 4.1546 1.9117 -3.8677 11 8 4.3481 0.5797 -4.3231 12 8 2.8849 2.5495 -3.8480 13 7 5.1444 2.8688 -4.7877 14 6 4.9054 4.3123 -4.8617 15 6 6.2592 2.2721 -5.5275 16 6 5.8257 1.9819 -6.9413 17 1 4.8202 2.2179 -7.2570 18 6 6.7124 1.4141 -7.8315 19 7 7.9366 1.1263 -7.4469 20 14 6.1748 1.0536 -9.5838 21 1 6.4554 2.2338 -10.4404 22 1 6.9227 -0.1212 -10.0993 23 1 4.7189 0.7616 -9.6047 24 6 4.3135 3.0867 -1.4310 25 6 4.0606 2.5501 -0.0011 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 5.0462 0.1349 0.6960 30 1 3.5898 -0.8096 0.3095 31 1 3.9096 -0.3926 -2.0337 32 1 5.3490 -1.1461 -1.3213 33 1 6.2290 0.5821 -2.6938 34 1 6.2404 1.2982 -1.0603 35 1 5.5264 4.8217 -4.1249 36 1 5.1567 4.6715 -5.8595 37 1 3.8549 4.5176 -4.6555 38 1 7.0996 2.9662 -5.5405 39 1 6.5619 1.3442 -5.0425 40 1 8.5606 0.7271 -8.0733 41 1 5.1033 3.8376 -1.4032 42 1 3.3987 3.5354 -1.8180 43 1 5.0160 2.4597 0.5157 44 1 3.4352 3.2626 0.5368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647077614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:17 Heat of formation + Delta-G solvation = -161.711433 kcal Electronic energy + Delta-G solvation = -29510.986397 eV Core-core repulsion = 25397.131186 eV Total energy + Delta-G solvation = -4113.855211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78481 -39.50618 -38.40965 -37.45730 -37.23686 -36.86005 -35.79430 -34.53242 -33.85683 -29.83633 -29.69554 -28.05387 -27.17170 -26.80835 -24.31164 -24.13856 -22.70525 -21.28254 -19.87058 -19.19209 -18.91043 -18.47489 -18.29374 -18.22042 -17.64602 -17.27596 -16.79930 -16.23169 -15.86583 -15.44195 -15.29415 -15.02570 -14.92048 -14.79510 -14.51933 -14.13393 -14.02602 -13.95645 -13.83759 -13.44334 -13.27441 -13.23197 -13.07261 -12.97781 -12.95401 -12.51865 -12.48489 -12.41889 -12.31288 -12.20916 -12.04313 -11.82275 -11.78798 -11.70499 -11.55781 -10.61870 -10.13128 -9.88196 -9.71673 -8.23074 -6.35197 -0.38174 1.17610 1.36434 1.38577 1.49199 1.69243 2.02618 2.37283 2.53590 2.89377 3.07449 3.35377 3.68964 3.89500 3.96775 4.02506 4.12149 4.28590 4.31094 4.34618 4.43996 4.52297 4.59749 4.64600 4.68795 4.70849 4.75980 4.78940 4.86786 4.93888 5.01917 5.10642 5.16468 5.22970 5.31746 5.43220 5.55623 5.65536 5.73662 5.96416 6.08754 6.20066 6.72279 7.17456 7.33711 8.84290 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003726 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.536113 B = 7513.065419 C = 7574.386114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.376 6.376 3 C 0.633 3.367 4 O -0.604 6.604 5 N -0.581 5.581 6 C 0.120 3.880 7 C -0.166 4.166 8 C 0.122 3.878 9 N -0.994 5.994 10 S 2.781 3.219 11 O -1.004 7.004 12 O -1.020 7.020 13 N -1.005 6.005 14 C 0.088 3.912 15 C 0.275 3.725 16 C -0.557 4.557 17 H 0.045 0.955 18 C 0.017 3.983 19 N -0.919 5.919 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.278 1.278 24 C 0.089 3.911 25 C 0.121 3.879 26 H 0.046 0.954 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.020 0.980 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.134 0.866 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 0.315 20.990 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.289 6.289 3 C 0.388 3.612 4 O -0.495 6.495 5 N -0.320 5.320 6 C 0.000 4.000 7 C -0.207 4.207 8 C -0.004 4.004 9 N -0.836 5.836 10 S 2.791 3.209 11 O -0.987 6.987 12 O -1.004 7.004 13 N -0.847 5.847 14 C -0.057 4.057 15 C 0.151 3.849 16 C -0.596 4.596 17 H 0.063 0.937 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.036 4.036 25 C -0.003 4.003 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.152 0.848 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.925 0.035 20.644 21.224 hybrid contribution -0.319 -0.023 -1.538 1.571 sum -5.244 0.012 19.107 19.813 Atomic orbital electron populations 1.23470 0.73274 1.05557 1.02286 1.86228 1.25478 1.30422 1.86772 1.18567 0.84349 0.82119 0.76158 1.90960 1.65259 1.36017 1.57310 1.46634 1.01304 1.09631 1.74403 1.21109 0.96546 0.85092 0.97247 1.21714 1.00381 1.00789 0.97767 1.21090 0.91657 0.86038 1.01605 1.57538 1.62795 1.34696 1.28540 1.01738 0.73085 0.72592 0.73461 1.93544 1.86457 1.37730 1.81019 1.93485 1.41303 1.77991 1.87585 1.57584 1.47006 1.18462 1.61607 1.21557 1.01320 0.79192 1.03631 1.18598 0.84056 0.92537 0.89718 1.21825 0.98219 1.41726 0.97807 0.93696 1.25684 0.94914 0.94854 1.02848 1.69984 1.05527 1.43311 1.37028 0.85636 0.78170 0.78529 0.79878 1.18902 1.19902 1.20351 1.22968 1.01198 0.88110 0.91364 1.21664 0.99962 0.83509 0.95180 0.93501 0.84581 0.91163 0.85598 0.88690 0.95297 0.86946 0.91820 0.85309 0.90294 0.91459 0.91244 0.95221 0.96164 0.92206 0.86513 0.91593 0.84783 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 10.56 113.37 1.20 2.15 16 2 O -0.38 -9.68 9.23 -55.41 -0.51 -10.19 16 3 C 0.63 18.39 8.39 129.79 1.09 19.47 16 4 O -0.60 -21.17 15.67 19.80 0.31 -20.86 16 5 N -0.58 -12.77 2.46 -961.67 -2.36 -15.14 16 6 C 0.12 1.92 5.71 84.24 0.48 2.41 16 7 C -0.17 -3.69 5.52 29.06 0.16 -3.52 16 8 C 0.12 2.88 5.24 87.21 0.46 3.34 16 9 N -0.99 -29.09 2.83 -512.24 -1.45 -30.54 16 10 S 2.78 117.78 5.85 -56.49 -0.33 117.45 16 11 O -1.00 -50.31 14.95 -128.00 -1.91 -52.22 16 12 O -1.02 -47.32 15.40 -128.00 -1.97 -49.29 16 13 N -1.01 -43.20 3.23 -543.25 -1.75 -44.96 16 14 C 0.09 3.07 10.72 127.77 1.37 4.44 16 15 C 0.27 14.11 5.12 85.63 0.44 14.55 16 16 C -0.56 -32.33 9.38 25.60 0.24 -32.09 16 17 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 18 C 0.02 0.98 5.46 84.66 0.46 1.44 16 19 N -0.92 -53.65 13.29 21.45 0.28 -53.37 16 20 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.09 2.01 6.84 86.54 0.59 2.60 16 25 C 0.12 2.09 5.25 87.53 0.46 2.55 16 26 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.13 0.93 8.06 -2.39 -0.02 0.91 16 30 H 0.09 1.48 7.05 -2.39 -0.02 1.46 16 31 H 0.03 0.90 7.27 -2.38 -0.02 0.88 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.86 7.64 -2.39 -0.02 1.84 16 34 H 0.13 1.76 7.59 -2.38 -0.02 1.75 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.43 8.11 -2.39 -0.02 2.41 16 37 H 0.07 2.34 6.99 -2.39 -0.02 2.32 16 38 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 39 H 0.02 1.11 7.46 -2.39 -0.02 1.09 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 41 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.07 1.91 6.90 -2.39 -0.02 1.90 16 43 H 0.13 1.07 7.73 -2.39 -0.02 1.06 16 44 H 0.09 1.69 7.36 -2.39 -0.02 1.67 16 Total: -1.00 -85.25 367.18 0.27 -84.99 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.00 Total: 9.63 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.95 Total: 17.34 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -5.28 Total: -144.00 kcal Atomic # 8 Polarization: -128.47 SS G_CDS: -4.09 Total: -132.56 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 117.78 SS G_CDS: -0.33 Total: 117.45 kcal Total: -85.25 0.27 -84.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647077614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.726 kcal (2) G-P(sol) polarization free energy of solvation -85.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds