Wall clock time and date at job start Tue Mar 31 2020 19:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35728 * 116.99809 * 2 1 4 4 C 1.39320 * 120.17760 * 90.00094 * 3 2 1 5 5 N 1.40181 * 120.01698 * 359.97438 * 4 3 2 6 6 C 1.34777 * 119.99869 * 214.08907 * 5 4 3 7 7 O 1.21594 * 119.99739 * 5.80618 * 6 5 4 8 8 N 1.34777 * 120.00156 * 185.80321 * 6 5 4 9 9 C 1.47571 * 134.49427 * 180.02562 * 8 6 5 10 10 C 1.53937 * 86.12081 * 155.35521 * 9 8 6 11 11 O 1.42898 * 113.74493 * 269.15219 * 10 9 8 12 12 C 1.50702 * 113.74326 * 137.94703 * 10 9 8 13 13 H 1.08002 * 120.00297 * 6.32440 * 12 10 9 14 14 C 1.37881 * 120.00008 * 186.32272 * 12 10 9 15 15 N 1.31514 * 119.99933 * 184.82091 * 14 12 10 16 16 Si 1.86802 * 120.00048 * 4.81916 * 14 12 10 17 17 H 1.48496 * 109.47196 * 270.00110 * 16 14 12 18 18 H 1.48498 * 109.46895 * 30.00082 * 16 14 12 19 19 H 1.48502 * 109.46950 * 150.00144 * 16 14 12 20 20 C 1.47812 * 134.45578 * 359.86498 * 8 6 5 21 21 C 1.38568 * 119.96005 * 180.25299 * 4 3 2 22 22 C 1.38507 * 120.32262 * 359.44590 * 21 4 3 23 23 C 1.37762 * 120.35987 * 0.55432 * 22 21 4 24 24 C 1.39811 * 120.03121 * 359.72577 * 23 22 21 25 25 C 1.47540 * 120.15979 * 179.97438 * 24 23 22 26 26 N 1.34777 * 120.00047 * 0.02562 * 25 24 23 27 27 O 1.21591 * 120.00239 * 180.02562 * 25 24 23 28 28 H 1.08993 * 109.47099 * 299.99891 * 1 2 3 29 29 H 1.09006 * 109.46820 * 60.00024 * 1 2 3 30 30 H 1.08993 * 109.47048 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00286 * 34.08454 * 5 4 3 32 32 H 1.08997 * 113.77110 * 41.05171 * 9 8 6 33 33 H 1.09009 * 113.77081 * 269.65809 * 9 8 6 34 34 H 0.96703 * 113.99986 * 173.01240 * 11 10 9 35 35 H 0.97002 * 120.00050 * 354.99630 * 15 14 12 36 36 H 1.09002 * 113.76957 * 90.37939 * 20 8 6 37 37 H 1.09000 * 113.83539 * 318.92222 * 20 8 6 38 38 H 1.08001 * 119.83781 * 179.70635 * 21 4 3 39 39 H 1.08002 * 119.81759 * 180.26022 * 22 21 4 40 40 H 1.08001 * 119.98451 * 179.74263 * 23 22 21 41 41 H 0.97001 * 120.00237 * 359.97438 * 26 25 24 42 42 H 0.97000 * 119.99907 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 2.3631 1.8334 1.2044 5 7 2.0463 1.2128 2.4208 6 6 1.6922 1.9589 3.4858 7 8 1.5449 3.1598 3.3648 8 7 1.5015 1.3740 4.6850 9 6 1.1213 1.8618 6.0248 10 6 0.6066 0.4343 6.2838 11 8 -0.7678 0.2470 5.9404 12 6 0.9472 -0.0944 7.6533 13 1 1.4131 0.5528 8.3816 14 6 0.6642 -1.4046 7.9765 15 7 0.8736 -1.8401 9.1996 16 14 -0.0169 -2.5610 6.6771 17 1 -1.5005 -2.4984 6.6873 18 1 0.4866 -2.1549 5.3404 19 1 0.4220 -3.9490 6.9707 20 6 1.5864 -0.0145 5.1847 21 6 2.9874 3.0704 1.1991 22 6 3.3084 3.6867 0.0009 23 6 3.0001 3.0816 -1.1977 24 6 2.3650 1.8361 -1.2099 25 6 2.0331 1.1858 -2.4919 26 7 2.3426 1.7921 -3.6551 27 8 1.4803 0.1028 -2.4992 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 2.0819 0.2463 2.4959 32 1 0.3350 2.6165 6.0109 33 1 1.9708 2.1423 6.6477 34 1 -1.0667 -0.6707 6.0001 35 1 1.2943 -1.2618 9.8550 36 1 2.5729 -0.2868 5.5600 37 1 1.1707 -0.7548 4.5012 38 1 3.2287 3.5545 2.1339 39 1 3.7987 4.6489 0.0064 40 1 3.2494 3.5694 -2.1284 41 1 2.7832 2.6563 -3.6494 42 1 2.1240 1.3647 -4.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647280370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:48 Heat of formation + Delta-G solvation = -63.895596 kcal Electronic energy + Delta-G solvation = -29272.403113 eV Core-core repulsion = 25027.345564 eV Total energy + Delta-G solvation = -4245.057550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03911 -40.02524 -38.89210 -37.98925 -37.20258 -34.64785 -34.44785 -33.82197 -32.67090 -30.76190 -30.07337 -28.27986 -26.86507 -25.79524 -24.97917 -24.32034 -22.30445 -21.42751 -20.19968 -19.29249 -18.70480 -18.17111 -17.83360 -17.45135 -17.04803 -16.34672 -15.88861 -15.86418 -15.68209 -15.37081 -15.03987 -14.79342 -14.64494 -14.31913 -14.00469 -13.67593 -13.51857 -13.29233 -12.87267 -12.65432 -12.36029 -12.29011 -12.23542 -12.11212 -11.57160 -11.44211 -10.88006 -10.56515 -10.42139 -10.33517 -10.20607 -9.98257 -9.88719 -9.70080 -9.53947 -9.06239 -8.98148 -8.65099 -8.35249 -7.96462 -6.76261 -4.53241 0.58214 0.97919 2.56341 2.69240 3.07534 3.09021 3.21472 3.28063 3.28708 3.47121 3.89366 3.99298 4.13225 4.52792 4.62644 4.69501 4.84694 5.05651 5.13487 5.17071 5.32825 5.37766 5.44649 5.48901 5.69478 5.80992 5.81563 5.95614 5.98632 6.10452 6.11620 6.21995 6.25907 6.30417 6.49874 6.53892 6.68174 7.03878 7.29974 7.40739 7.43261 8.02011 8.02213 8.25685 8.43000 8.53796 8.72520 9.22796 10.59886 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003155 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.161894 B = 8872.872466 C = 9902.181101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.318 6.318 3 C 0.122 3.878 4 C 0.158 3.842 5 N -0.683 5.683 6 C 0.723 3.277 7 O -0.589 6.589 8 N -0.648 5.648 9 C 0.150 3.850 10 C 0.199 3.801 11 O -0.555 6.555 12 C -0.611 4.611 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.890 5.890 16 Si 1.030 2.970 17 H -0.276 1.276 18 H -0.266 1.266 19 H -0.279 1.279 20 C 0.057 3.943 21 C -0.084 4.084 22 C -0.111 4.111 23 C -0.099 4.099 24 C -0.147 4.147 25 C 0.564 3.436 26 N -0.854 5.854 27 O -0.521 6.521 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.356 0.644 35 H 0.274 0.726 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.399 0.601 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 7.238 -21.875 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.234 6.234 3 C 0.074 3.926 4 C 0.061 3.939 5 N -0.331 5.331 6 C 0.427 3.573 7 O -0.468 6.468 8 N -0.385 5.385 9 C 0.028 3.972 10 C 0.158 3.842 11 O -0.364 6.364 12 C -0.649 4.649 13 H 0.090 0.910 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.858 3.142 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.205 1.205 20 C -0.065 4.065 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.152 4.152 25 C 0.350 3.650 26 N -0.420 5.420 27 O -0.397 6.397 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.206 0.794 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.229 0.771 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.025 6.384 -22.137 23.389 hybrid contribution 0.674 0.903 0.059 1.129 sum 4.699 7.287 -22.079 23.720 Atomic orbital electron populations 1.22882 0.78016 1.03387 1.00203 1.85958 1.20370 1.23100 1.93936 1.18368 0.97070 0.87426 0.89729 1.17798 0.97958 0.94021 0.84115 1.42578 1.71441 1.10671 1.08360 1.15430 0.77762 0.84475 0.79585 1.90878 1.59444 1.12607 1.83879 1.49375 1.70545 1.11992 1.06575 1.23185 0.98166 0.98120 0.77753 1.20481 0.79089 0.92223 0.92451 1.86450 1.27419 1.30996 1.91573 1.22250 1.46041 0.98807 0.97759 0.90961 1.25818 0.94896 0.96944 0.99630 1.70766 1.37793 1.40881 1.02808 0.84331 0.77205 0.77308 0.75334 1.20253 1.19218 1.20484 1.24863 1.02545 0.82652 0.96487 1.21386 0.95103 0.94065 0.99964 1.20972 1.00393 1.00350 0.91287 1.21088 0.98661 0.93506 0.98634 1.19971 1.06261 0.96336 0.92605 1.18034 0.78264 0.84751 0.83930 1.43750 1.64850 1.25117 1.08239 1.90865 1.41109 1.20287 1.87437 0.93932 0.93431 0.88674 0.75200 0.90621 0.89038 0.79407 0.91525 0.88827 0.90942 0.83588 0.84737 0.85326 0.77120 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.49 101.05 1.06 1.72 16 2 O -0.32 -4.82 8.39 -40.80 -0.34 -5.16 16 3 C 0.12 1.76 5.75 -38.53 -0.22 1.53 16 4 C 0.16 2.35 6.28 -83.51 -0.52 1.83 16 5 N -0.68 -10.98 5.20 -14.12 -0.07 -11.05 16 6 C 0.72 13.74 8.48 -86.92 -0.74 13.00 16 7 O -0.59 -12.42 14.81 5.28 0.08 -12.34 16 8 N -0.65 -12.55 3.61 -183.91 -0.66 -13.22 16 9 C 0.15 3.04 8.23 -2.98 -0.02 3.01 16 10 C 0.20 4.36 1.06 -90.86 -0.10 4.27 16 11 O -0.56 -12.51 13.43 -35.23 -0.47 -12.99 16 12 C -0.61 -15.32 9.04 -34.44 -0.31 -15.63 16 13 H 0.07 1.94 8.04 -52.49 -0.42 1.51 16 14 C 0.03 0.90 5.47 -17.82 -0.10 0.80 16 15 N -0.89 -24.88 13.70 55.43 0.76 -24.12 16 16 Si 1.03 21.53 24.84 -169.99 -4.22 17.31 16 17 H -0.28 -5.50 6.95 56.52 0.39 -5.10 16 18 H -0.27 -4.89 4.66 56.52 0.26 -4.62 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.06 1.09 6.48 -2.85 -0.02 1.07 16 21 C -0.08 -1.13 8.65 -39.36 -0.34 -1.47 16 22 C -0.11 -1.10 10.02 -39.66 -0.40 -1.50 16 23 C -0.10 -0.88 9.53 -39.17 -0.37 -1.25 16 24 C -0.15 -1.76 5.88 -104.87 -0.62 -2.37 16 25 C 0.56 6.56 8.04 -12.47 -0.10 6.46 16 26 N -0.85 -5.63 8.82 30.46 0.27 -5.36 16 27 O -0.52 -7.99 14.84 -16.62 -0.25 -8.24 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.63 7.50 -51.93 -0.39 0.24 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.41 6.17 8.18 -40.82 -0.33 5.84 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.74 8.09 -51.92 -0.42 1.32 16 34 H 0.36 7.44 4.50 45.56 0.21 7.64 16 35 H 0.27 7.63 8.72 -40.82 -0.36 7.28 16 36 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 37 H 0.07 1.30 6.40 -51.93 -0.33 0.97 16 38 H 0.15 2.16 6.45 -52.49 -0.34 1.82 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.61 6.40 -52.49 -0.34 0.28 16 41 H 0.40 1.44 6.86 -40.82 -0.28 1.16 16 42 H 0.40 2.11 8.93 -40.82 -0.36 1.74 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -33.27 350.39 -6.86 -40.13 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -4.42 Total: 18.30 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -2.80 Total: 11.47 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.29 Total: -53.75 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.98 Total: -38.73 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.22 Total: 17.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.27 -6.86 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647280370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.765 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds